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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 11;67(Pt 7):o1613. doi: 10.1107/S1600536811020691

5,5′,6,6′-Tetra­methyl-3,3′-bi-1,2,4-tri­azine

Ewa Wolińska a, Zbigniew Karczmarzyk a,*, Andrzej Rykowski a, Waldemar Wysocki a
PMCID: PMC3151877  PMID: 21837021

Abstract

In the title compound, C10H12N6, the two 5,6-dimethyl-1,2,4-triazine halves of the mol­ecule are related by a centre of symmetry. The two triazine rings are coplanar to within a maximum deviation of 0.013 (2) Å from the mean plane of the ring atoms. In the crystal, mol­ecules form layers parallel to the (100) crystallographic plane. Adjacent layers are held together via a C—H⋯π inter­action involving mol­ecules related by an a-glide plane.

Related literature

For background information, see: Branowska & Rykowski (2002); Branowska (2003); Boger & Weinrab (1987); Pabst et al. (1998). For the synthesis, see: Dedichen (1936, 1937). For a related structure, see: Breu & Range (1993).graphic file with name e-67-o1613-scheme1.jpg

Experimental

Crystal data

  • C10H12N6

  • M r = 216.26

  • Orthorhombic, Inline graphic

  • a = 8.1167 (7) Å

  • b = 10.6662 (12) Å

  • c = 12.7127 (11) Å

  • V = 1100.59 (18) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 0.71 mm−1

  • T = 293 K

  • 0.20 × 0.20 × 0.10 mm

Data collection

  • Kuma KM4 four-circle diffractometer

  • Absorption correction: ψ scan (North et al., 1968) T min = 0.830, T max = 0.929

  • 1637 measured reflections

  • 1205 independent reflections

  • 910 reflections with I > 2σ(I)

  • R int = 0.100

  • 2 standard reflections every 100 reflections intensity decay: 1.3%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.064

  • wR(F 2) = 0.272

  • S = 1.16

  • 1205 reflections

  • 92 parameters

  • All H-atom parameters refined

  • Δρmax = 0.29 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: KM4B8 (Gałdecki et al., 1996); cell refinement: KM4B8; data reduction: DATAPROC (Gałdecki et al., 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811020691/fy2014sup1.cif

e-67-o1613-sup1.cif (16KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020691/fy2014Isup2.hkl

e-67-o1613-Isup2.hkl (58.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811020691/fy2014Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

CgA is the centroid of the triazine ring.

D—H⋯A D—H H⋯A DA D—H⋯A
C51—H511⋯CgAi 1.09 (5) 2.96 (4) 3.616 (3) 119 (3)

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

In the course of our research we widely explored the synthesis of cycloalkeno[c]fused 2,2'-bipyridines using Diels–Alder reactions of 5,5'-bi-1,2,4-triazine derivatives as dienes (Branowska & Rykowski, 2002; Branowska, 2003). However, when we turned our attention to the synthesis of 5,5',6,6'-tetrasubstituted-2,2'-bipyridines, these dienes did not appear useful. Considering the mechanism of the Diels–Alder reaction of 5,5'-bi-1,2,4-triazine, it is clear that to obtain 5,5',6,6'-tetrasubstituted-2,2'-bipyridines, the substituents in positions 5 and 5' of the product have to originate from an unsymmetrical dienofile. Unfortunately, application of such a dienofile can lead to a mixture of 5,5',6,6'- and 3,3',6,6'-tetrasubstituted-2,2'-bipyridines (Boger & Weinrab, 1987). To solve the problem with selectivity, we envisaged that 3,3'-bi-1,2,4-triazines with substituents in 5 and 5' positions can be structurally ideal diene partners in the Diels–Alder synthesis of 5,5',6,6'-tetrasubstituted-2,2'-bipyridines (Pabst et al., 1998). The title compound 5,5',6,6'-tetramethyl-3,3'-bi-1,2,4-triazine was synthesized and its X-ray structure was determined as a part of this research.

The two 5,6-dimethyl-1,2,4-triazine parts of the molecule (I) are related by a crystallographic center of symmetry and possess the trans conformation, with the triazine rings being coplanar to within a 0.013 (2) Å maximum deviation from the mean plane. The geometry and conformation of (I) are very similar to those observed in the related structure of 5,5',6,6'-tetraphenyl-3,3'-bi-1,2,4-triazine (Breu & Range, 1993).

In the crystal structure, the molecules of (I) form molecular layers parallel to the (100) crystallographic plane (Fig. 2), with the molecular mean planes being inclined to this plane at an angle of 34.8 (5)°. The layers are held together via C—H···π interaction involving the C51—H151 atoms of the methyl group and the triazine ring from the molecule related by an a-glide plane.

Experimental

The title compound, (I), was prepared by the condensation of oxalhydrazidine with 2,3-butanedione according to the procedure of Dedichen (1936, 1937). Crystals suitable for X-ray diffraction analysis were grown by slow evaporation of a benzene solution.

Refinement

All H atoms were located in a difference Fourier map and their coordinates were refined freely with isotropic displacement parameters Uiso(H) = 1.5Ueq(C). Refined C—H distances were in the range 0.96 (5)–1.09 (5) Å.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), with atom labels and 50% probability displacement ellipsoids for non-H atoms.

Fig. 2.

Fig. 2.

A view of the molecular packing in (I). H atoms are omitted for clarity.

Crystal data

C10H12N6 Dx = 1.305 Mg m3
Mr = 216.26 Melting point = 441–442 K
Orthorhombic, Pbca Cu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ac 2ab Cell parameters from 25 reflections
a = 8.1167 (7) Å θ = 11.5–22.4°
b = 10.6662 (12) Å µ = 0.71 mm1
c = 12.7127 (11) Å T = 293 K
V = 1100.59 (18) Å3 Prism, yellow
Z = 4 0.20 × 0.20 × 0.10 mm
F(000) = 456

Data collection

Kuma KM4 four-circle diffractometer 910 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.100
graphite θmax = 80.2°, θmin = 7.0°
ω/2θ scans h = −1→10
Absorption correction: ψ scan (North et al., 1968) k = −1→13
Tmin = 0.830, Tmax = 0.929 l = −1→16
1637 measured reflections 2 standard reflections every 100 reflections
1205 independent reflections intensity decay: 1.3%

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064 All H-atom parameters refined
wR(F2) = 0.272 w = 1/[σ2(Fo2) + (0.2P)2] where P = (Fo2 + 2Fc2)/3
S = 1.16 (Δ/σ)max < 0.001
1205 reflections Δρmax = 0.29 e Å3
92 parameters Δρmin = −0.24 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.032 (7)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.4275 (4) 0.2701 (2) 0.50737 (19) 0.0750 (8)
N2 0.4248 (3) 0.1532 (2) 0.4693 (2) 0.0733 (8)
N4 0.58882 (19) 0.08158 (18) 0.61103 (13) 0.0491 (6)
C3 0.5036 (2) 0.0648 (2) 0.52195 (15) 0.0488 (7)
C5 0.5959 (2) 0.1973 (2) 0.64669 (16) 0.0501 (7)
C6 0.5112 (3) 0.2946 (2) 0.59397 (18) 0.0541 (7)
C51 0.6953 (4) 0.2213 (3) 0.7429 (2) 0.0750 (9)
H511 0.771 (6) 0.142 (5) 0.767 (3) 0.113*
H512 0.762 (7) 0.297 (4) 0.732 (3) 0.113*
H513 0.621 (6) 0.241 (6) 0.803 (3) 0.113*
C61 0.5097 (4) 0.4263 (3) 0.6326 (3) 0.0733 (9)
H611 0.482 (6) 0.431 (4) 0.709 (4) 0.110*
H612 0.427 (5) 0.476 (6) 0.599 (4) 0.110*
H613 0.617 (5) 0.462 (5) 0.618 (3) 0.110*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.1042 (18) 0.0492 (13) 0.0717 (14) 0.0018 (11) −0.0267 (12) 0.0010 (10)
N2 0.1037 (18) 0.0482 (12) 0.0680 (13) 0.0020 (10) −0.0359 (11) −0.0007 (9)
N4 0.0483 (9) 0.0560 (12) 0.0431 (9) −0.0048 (6) −0.0053 (6) −0.0018 (6)
C3 0.0512 (10) 0.0529 (13) 0.0424 (10) −0.0044 (8) −0.0061 (7) 0.0006 (8)
C5 0.0484 (10) 0.0574 (13) 0.0445 (10) −0.0097 (7) 0.0017 (7) −0.0064 (8)
C6 0.0610 (12) 0.0471 (12) 0.0543 (11) −0.0093 (8) 0.0071 (8) −0.0029 (8)
C51 0.0804 (16) 0.0834 (19) 0.0613 (14) −0.0116 (15) −0.0183 (12) −0.0177 (13)
C61 0.092 (2) 0.0515 (15) 0.0760 (18) −0.0118 (12) 0.0119 (14) −0.0092 (12)

Geometric parameters (Å, °)

N1—C6 1.320 (3) C6—C61 1.488 (3)
N1—N2 1.337 (3) C51—H511 1.09 (5)
N2—C3 1.322 (3) C51—H512 0.98 (5)
N4—C5 1.316 (3) C51—H513 1.00 (5)
N4—C3 1.339 (2) C61—H611 1.00 (5)
C3—C3i 1.492 (4) C61—H612 0.96 (5)
C5—C6 1.414 (4) C61—H613 0.97 (5)
C5—C51 1.488 (3)
C6—N1—N2 119.7 (2) C5—C51—H511 114 (2)
C3—N2—N1 118.3 (2) C5—C51—H512 109 (3)
C5—N4—C3 116.05 (19) H511—C51—H512 112 (4)
N2—C3—N4 125.6 (2) C5—C51—H513 110 (3)
N2—C3—C3i 116.9 (2) H511—C51—H513 107 (4)
N4—C3—C3i 117.4 (2) H512—C51—H513 106 (4)
N4—C5—C6 120.27 (19) C6—C61—H611 112 (3)
N4—C5—C51 118.0 (2) C6—C61—H612 113 (3)
C6—C5—C51 121.8 (2) H611—C61—H612 105 (4)
N1—C6—C5 120.0 (2) C6—C61—H613 108 (3)
N1—C6—C61 117.3 (2) H611—C61—H613 111 (4)
C5—C6—C61 122.7 (2) H612—C61—H613 109 (4)
C6—N1—N2—C3 1.8 (4) N2—N1—C6—C5 −0.8 (4)
N1—N2—C3—N4 −0.7 (4) N2—N1—C6—C61 180.0 (2)
N1—N2—C3—C3i 179.2 (2) N4—C5—C6—N1 −1.4 (3)
C5—N4—C3—N2 −1.4 (3) C51—C5—C6—N1 178.4 (3)
C5—N4—C3—C3i 178.6 (2) N4—C5—C6—C61 177.8 (2)
C3—N4—C5—C6 2.4 (3) C51—C5—C6—C61 −2.4 (3)
C3—N4—C5—C51 −177.4 (2)

Symmetry codes: (i) −x+1, −y, −z+1.

Hydrogen-bond geometry (Å, °)

CgA is the centroid of the triazine ring.
D—H···A D—H H···A D···A D—H···A
C51—H511···CgAii 1.09 (5) 2.96 (4) 3.616 (3) 119 (3)

Symmetry codes: (ii) x−1/2, y, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FY2014).

References

  1. Boger, D. L. & Weinrab, S. N. (1987). Hetero Diels–Alder Methodology in Organic Synthesis Organic Chemistry: A Series of Monographs, Vol. 47, pp. 323–335. San Diego: Academic Press.
  2. Branowska, D. (2003). Synthesis, pp. 2096–2100.
  3. Branowska, D. & Rykowski, A. (2002). Synlett, pp. 1892–1894.
  4. Breu, J. & Range, K.-J. (1993). Acta Cryst. C49, 1541–1543.
  5. Dedichen, G. (1936). Avh. Nor. Vidensk. Akad. Oslo Mat. Naturvidensk. Kl. 5, 42.
  6. Dedichen, G. (1937). Chem. Abstr 31, 4985–4988.
  7. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  8. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  9. Gałdecki, Z., Kowalski, A., Kucharczyk, D. & Uszyński, L. (1996). KM4B8 Kuma Diffraction, Wrocław, Poland.
  10. Gałdecki, Z., Kowalski, A. & Uszyński, L. (1995). DATAPROC Kuma Diffraction, Wrocław, Poland.
  11. North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
  12. Pabst, R. G., Schmid, K. & Sauer, J. (1998). Tetrahedron Lett. 39, 6691–6695.
  13. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811020691/fy2014sup1.cif

e-67-o1613-sup1.cif (16KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020691/fy2014Isup2.hkl

e-67-o1613-Isup2.hkl (58.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811020691/fy2014Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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