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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 11;67(Pt 7):o1610. doi: 10.1107/S1600536811021052

2-(3-Nitro­phen­yl)-4-oxo-4-phenyl­butane­nitrile

Jingya Yang a,*, Hongyan Zhou b, Zheng Li a
PMCID: PMC3151887  PMID: 21837018

Abstract

The structure of the title compound, C16H12N2O3, contains two aromatic rings bridged by a C3 chain. The dihedral angle between the rings is 67.6 (1)°. No classical hydrogen bonds are not found in the crystal structure.

Related literature

For the synthesis of the title compound, see: Yang et al. (2009); Yang, Shen & Chen (2010). For a related structure, see: Yang, Wu & Chen (2010). For nitrile-containing pharmaceuticals, see: Fleming et al. (2010).graphic file with name e-67-o1610-scheme1.jpg

Experimental

Crystal data

  • C16H12N2O3

  • M r = 280.28

  • Orthorhombic, Inline graphic

  • a = 10.105 (9) Å

  • b = 8.485 (8) Å

  • c = 31.37 (3) Å

  • V = 2690 (4) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 296 K

  • 0.28 × 0.25 × 0.24 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.973, T max = 0.977

  • 11482 measured reflections

  • 2470 independent reflections

  • 1541 reflections with I > 2σ(I)

  • R int = 0.064

Refinement

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.122

  • S = 1.03

  • 2470 reflections

  • 191 parameters

  • H-atom parameters constrained

  • Δρmax = 0.14 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021052/bh2356sup1.cif

e-67-o1610-sup1.cif (21.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021052/bh2356Isup2.hkl

e-67-o1610-Isup2.hkl (121.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811021052/bh2356Isup3.cdx

Supplementary material file. DOI: 10.1107/S1600536811021052/bh2356Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

The authors thank the National Natural Science Foundation of China (grant No. 20772096) for financial support and Dr Yong-Liang Shao from the Center of Testing and Analysis, Lanzhou University, for the structure determination.

supplementary crystallographic information

Comment

Nitriles are important synthetic intermediates in organic synthesis, because of their easy preparations and versatile transformations (e.g. Yang, Wu & Chen, 2010). Furthermore, nitriles usually exhibit important biological and pharmacological activity. For example, many nitrile-containing pharmaceuticals are widely used in clinical treatments (Fleming et al., 2010).

Here we report on the crystal structure of the title compound, C16H12N2O3 (Fig. 1). In the structure, two aromatic rings are planar (the mean deviation from plane of the benzene ring carrying C1 is 0.0025 Å and the corresponding value of the phenyl ring carrying C10 is 0.0043 Å), but they make a large dihedral angle of 67.6 (1)°, which may be caused by the carbon chain of the bridging section that can rotate freely. From the packing diagram (Fig. 2), it can be seen that the molecules of the title compound, which display a similar V-shaped conformation, are interlayed along the a axis to form a crab-like motif and these crab-like motifs are repeatedly arranged to generate the final crystal structure.

Experimental

After Cs2CO3 (0.5 mg, 0.0015 mmol), (E)-3-(3-nitrophenyl)-1-phenylprop-2-en-1-one (76.0 mg, 0.3 mmol), and dioxane (0.5 ml) were charged into a dry Schlenk tube equipped with cold finger under argon, Me3SiCN (57 ml, 0.45 mmol) and H2O (22 ml, 1.2 mmol) were added. The reaction mixture was refluxed until the reaction was complete (monitored by TLC). Then, H2O (2 ml) was added at r.t. and the resulting mixture was extracted with EtOAc (5 ml). The extract was washed with H2O (2 ml), brine (3 ml), dried (Na2SO4), and concentrated. The crude product was purified by flash column chromatography on silica gel (PE–EtOAc, 10:1) to afford pure title compound as a yellowish solid (75.7 mg, 90% yield), as previously reported (Yang et al., 2009; Yang, Shen & Chen, 2010). Colorless single crystals of the title compound suitable for X-ray structure determination were obtained by vapour diffusion of petroleum ether into its ethyl acetate solution at room temperature.

Refinement

All hydrogen atoms bonded to carbon were introduced to idealized positions and allowed to ride on their parent atoms.

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot of the title compound at the 30% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Packing diagram of the title compound; all hydrogen atoms bonded to carbon are omitted for clarity.

Crystal data

C16H12N2O3 F(000) = 1168
Mr = 280.28 Dx = 1.384 Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 1926 reflections
a = 10.105 (9) Å θ = 2.6–24.8°
b = 8.485 (8) Å µ = 0.10 mm1
c = 31.37 (3) Å T = 296 K
V = 2690 (4) Å3 Block, colourless
Z = 8 0.28 × 0.25 × 0.24 mm

Data collection

Bruker APEXII CCD diffractometer 2470 independent reflections
Radiation source: fine-focus sealed tube 1541 reflections with I > 2σ(I)
graphite Rint = 0.064
φ and ω scans θmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −11→9
Tmin = 0.973, Tmax = 0.977 k = −10→10
11482 measured reflections l = −36→38

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050 H-atom parameters constrained
wR(F2) = 0.122 w = 1/[σ2(Fo2) + (0.0432P)2 + 0.5508P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max < 0.001
2470 reflections Δρmax = 0.14 e Å3
191 parameters Δρmin = −0.21 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraints Extinction coefficient: 0.0057 (9)
Primary atom site location: structure-invariant direct methods

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.9659 (2) 0.7730 (3) 0.76158 (8) 0.0531 (7)
H1 1.0233 0.8327 0.7449 0.064*
C2 0.9790 (3) 0.7738 (3) 0.80556 (8) 0.0600 (7)
H2 1.0458 0.8331 0.8182 0.072*
C3 0.8944 (3) 0.6881 (3) 0.83050 (8) 0.0611 (8)
H3 0.9030 0.6898 0.8600 0.073*
C4 0.7968 (3) 0.5993 (3) 0.81171 (8) 0.0612 (8)
H4 0.7392 0.5406 0.8286 0.073*
C5 0.7838 (2) 0.5969 (3) 0.76813 (8) 0.0529 (7)
H5 0.7177 0.5359 0.7558 0.063*
C6 0.8680 (2) 0.6842 (2) 0.74222 (7) 0.0431 (6)
C7 0.8505 (3) 0.6785 (3) 0.69527 (7) 0.0462 (6)
C8 0.9342 (2) 0.7828 (3) 0.66743 (7) 0.0472 (6)
H8A 1.0267 0.7642 0.6740 0.057*
H8B 0.9148 0.8919 0.6741 0.057*
C9 0.9127 (2) 0.7566 (3) 0.61978 (7) 0.0470 (6)
H9 0.8180 0.7682 0.6139 0.056*
C10 0.9863 (2) 0.8761 (2) 0.59265 (6) 0.0411 (6)
C11 1.1213 (3) 0.8670 (3) 0.58598 (7) 0.0505 (6)
H11 1.1692 0.7857 0.5985 0.061*
C12 1.1858 (3) 0.9763 (3) 0.56111 (8) 0.0555 (7)
H12 1.2767 0.9683 0.5570 0.067*
C13 1.1164 (3) 1.0971 (3) 0.54237 (7) 0.0512 (7)
H13 1.1588 1.1705 0.5251 0.061*
C14 0.9831 (3) 1.1064 (2) 0.54980 (6) 0.0408 (6)
C15 0.9168 (2) 0.9985 (2) 0.57425 (6) 0.0425 (6)
H15 0.8260 1.0075 0.5784 0.051*
C16 0.9514 (3) 0.5952 (3) 0.60812 (7) 0.0543 (7)
N1 0.9820 (3) 0.4705 (3) 0.60021 (7) 0.0789 (8)
N2 0.9061 (3) 1.2315 (2) 0.52900 (6) 0.0551 (6)
O1 0.77009 (19) 0.5898 (2) 0.67920 (5) 0.0685 (6)
O2 0.7895 (2) 1.2441 (2) 0.53819 (6) 0.0762 (6)
O3 0.9621 (2) 1.3169 (2) 0.50346 (6) 0.0822 (7)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0547 (19) 0.0492 (15) 0.0554 (16) −0.0029 (13) 0.0082 (13) −0.0014 (11)
C2 0.063 (2) 0.0625 (17) 0.0547 (16) 0.0048 (15) −0.0027 (14) −0.0084 (13)
C3 0.075 (2) 0.0583 (16) 0.0504 (15) 0.0120 (16) 0.0040 (15) 0.0060 (13)
C4 0.068 (2) 0.0549 (16) 0.0612 (17) 0.0003 (15) 0.0160 (15) 0.0127 (13)
C5 0.0537 (18) 0.0455 (14) 0.0595 (16) −0.0052 (13) 0.0064 (13) 0.0021 (11)
C6 0.0445 (15) 0.0328 (11) 0.0520 (14) 0.0030 (11) 0.0029 (12) −0.0005 (10)
C7 0.0465 (17) 0.0381 (12) 0.0539 (14) 0.0004 (12) 0.0034 (12) −0.0021 (11)
C8 0.0552 (17) 0.0396 (13) 0.0469 (13) −0.0003 (12) 0.0044 (12) −0.0019 (10)
C9 0.0488 (16) 0.0423 (13) 0.0498 (14) 0.0000 (12) −0.0024 (12) 0.0033 (11)
C10 0.0458 (16) 0.0380 (13) 0.0396 (12) 0.0008 (12) −0.0016 (11) −0.0032 (9)
C11 0.0514 (18) 0.0459 (14) 0.0541 (14) 0.0061 (13) −0.0062 (13) −0.0009 (11)
C12 0.0466 (17) 0.0611 (17) 0.0588 (15) −0.0019 (14) 0.0072 (13) −0.0091 (13)
C13 0.065 (2) 0.0471 (15) 0.0418 (13) −0.0128 (14) 0.0069 (13) −0.0057 (11)
C14 0.0525 (18) 0.0373 (13) 0.0327 (11) −0.0009 (12) −0.0002 (11) −0.0023 (9)
C15 0.0462 (15) 0.0418 (13) 0.0395 (12) 0.0016 (12) 0.0023 (11) −0.0047 (10)
C16 0.076 (2) 0.0431 (14) 0.0434 (13) −0.0050 (14) 0.0011 (13) 0.0012 (11)
N1 0.130 (2) 0.0490 (14) 0.0580 (13) 0.0020 (15) 0.0080 (14) −0.0041 (11)
N2 0.0806 (19) 0.0456 (13) 0.0390 (11) 0.0003 (13) −0.0050 (12) 0.0016 (9)
O1 0.0680 (14) 0.0775 (13) 0.0598 (11) −0.0274 (11) 0.0011 (10) −0.0029 (10)
O2 0.0735 (16) 0.0810 (14) 0.0740 (13) 0.0222 (12) −0.0015 (12) 0.0186 (10)
O3 0.1196 (19) 0.0640 (12) 0.0631 (12) −0.0041 (12) 0.0080 (12) 0.0230 (10)

Geometric parameters (Å, °)

C1—C6 1.384 (3) C9—C16 1.470 (4)
C1—C2 1.386 (4) C9—C10 1.518 (3)
C1—H1 0.9300 C9—H9 0.9800
C2—C3 1.368 (4) C10—C15 1.380 (3)
C2—H2 0.9300 C10—C11 1.381 (3)
C3—C4 1.374 (4) C11—C12 1.376 (3)
C3—H3 0.9300 C11—H11 0.9300
C4—C5 1.374 (4) C12—C13 1.374 (3)
C4—H4 0.9300 C12—H12 0.9300
C5—C6 1.390 (3) C13—C14 1.369 (4)
C5—H5 0.9300 C13—H13 0.9300
C6—C7 1.484 (3) C14—C15 1.370 (3)
C7—O1 1.217 (3) C14—N2 1.469 (3)
C7—C8 1.504 (3) C15—H15 0.9300
C8—C9 1.527 (3) C16—N1 1.130 (3)
C8—H8A 0.9700 N2—O2 1.218 (3)
C8—H8B 0.9700 N2—O3 1.219 (3)
C6—C1—C2 120.5 (2) C16—C9—C8 109.97 (19)
C6—C1—H1 119.7 C10—C9—C8 112.46 (19)
C2—C1—H1 119.7 C16—C9—H9 107.9
C3—C2—C1 120.4 (3) C10—C9—H9 107.9
C3—C2—H2 119.8 C8—C9—H9 107.9
C1—C2—H2 119.8 C15—C10—C11 118.8 (2)
C2—C3—C4 119.7 (3) C15—C10—C9 119.2 (2)
C2—C3—H3 120.2 C11—C10—C9 122.1 (2)
C4—C3—H3 120.2 C12—C11—C10 121.0 (2)
C3—C4—C5 120.2 (3) C12—C11—H11 119.5
C3—C4—H4 119.9 C10—C11—H11 119.5
C5—C4—H4 119.9 C13—C12—C11 120.3 (3)
C4—C5—C6 121.1 (2) C13—C12—H12 119.9
C4—C5—H5 119.5 C11—C12—H12 119.9
C6—C5—H5 119.5 C14—C13—C12 118.2 (2)
C1—C6—C5 118.1 (2) C14—C13—H13 120.9
C1—C6—C7 122.6 (2) C12—C13—H13 120.9
C5—C6—C7 119.3 (2) C13—C14—C15 122.5 (2)
O1—C7—C6 120.7 (2) C13—C14—N2 119.1 (2)
O1—C7—C8 119.9 (2) C15—C14—N2 118.2 (2)
C6—C7—C8 119.3 (2) C14—C15—C10 119.2 (2)
C7—C8—C9 113.8 (2) C14—C15—H15 120.4
C7—C8—H8A 108.8 C10—C15—H15 120.4
C9—C8—H8A 108.8 N1—C16—C9 178.2 (3)
C7—C8—H8B 108.8 O2—N2—O3 123.5 (2)
C9—C8—H8B 108.8 O2—N2—C14 118.1 (2)
H8A—C8—H8B 107.7 O3—N2—C14 118.4 (3)
C16—C9—C10 110.6 (2)
C6—C1—C2—C3 −0.7 (4) C8—C9—C10—C15 −103.3 (2)
C1—C2—C3—C4 0.7 (4) C16—C9—C10—C11 −47.2 (3)
C2—C3—C4—C5 −0.2 (4) C8—C9—C10—C11 76.2 (3)
C3—C4—C5—C6 −0.4 (4) C15—C10—C11—C12 −0.7 (3)
C2—C1—C6—C5 0.2 (3) C9—C10—C11—C12 179.7 (2)
C2—C1—C6—C7 −179.5 (2) C10—C11—C12—C13 0.0 (4)
C4—C5—C6—C1 0.4 (4) C11—C12—C13—C14 1.1 (3)
C4—C5—C6—C7 −179.9 (2) C12—C13—C14—C15 −1.5 (3)
C1—C6—C7—O1 174.3 (2) C12—C13—C14—N2 −178.05 (19)
C5—C6—C7—O1 −5.4 (3) C13—C14—C15—C10 0.7 (3)
C1—C6—C7—C8 −5.2 (3) N2—C14—C15—C10 177.34 (18)
C5—C6—C7—C8 175.1 (2) C11—C10—C15—C14 0.4 (3)
O1—C7—C8—C9 −3.5 (3) C9—C10—C15—C14 179.96 (19)
C6—C7—C8—C9 176.0 (2) C13—C14—N2—O2 −175.3 (2)
C7—C8—C9—C16 −62.9 (3) C15—C14—N2—O2 8.0 (3)
C7—C8—C9—C10 173.33 (19) C13—C14—N2—O3 4.9 (3)
C16—C9—C10—C15 133.2 (2) C15—C14—N2—O3 −171.9 (2)

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BH2356).

References

  1. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Fleming, F. F., Yao, L., Ravikumar, P. C., Funk, L. & Shook, B. C. (2010). J. Med. Chem. 53, 7902–7917. [DOI] [PMC free article] [PubMed]
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Yang, J., Shen, Y. & Chen, F.-X. (2010). Synthesis, pp. 1325–1333.
  5. Yang, J., Wang, Y., Wu, S. & Chen, F.-X. (2009). Synlett, pp. 3365–3367.
  6. Yang, J., Wu, S. & Chen, F.-X. (2010). Synlett, pp. 2725–2728.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021052/bh2356sup1.cif

e-67-o1610-sup1.cif (21.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021052/bh2356Isup2.hkl

e-67-o1610-Isup2.hkl (121.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811021052/bh2356Isup3.cdx

Supplementary material file. DOI: 10.1107/S1600536811021052/bh2356Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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