Abstract
The structure of the title compound, C16H12N2O3, contains two aromatic rings bridged by a C3 chain. The dihedral angle between the rings is 67.6 (1)°. No classical hydrogen bonds are not found in the crystal structure.
Related literature
For the synthesis of the title compound, see: Yang et al. (2009 ▶); Yang, Shen & Chen (2010 ▶). For a related structure, see: Yang, Wu & Chen (2010 ▶). For nitrile-containing pharmaceuticals, see: Fleming et al. (2010 ▶).
Experimental
Crystal data
C16H12N2O3
M r = 280.28
Orthorhombic,
a = 10.105 (9) Å
b = 8.485 (8) Å
c = 31.37 (3) Å
V = 2690 (4) Å3
Z = 8
Mo Kα radiation
μ = 0.10 mm−1
T = 296 K
0.28 × 0.25 × 0.24 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.973, T max = 0.977
11482 measured reflections
2470 independent reflections
1541 reflections with I > 2σ(I)
R int = 0.064
Refinement
R[F 2 > 2σ(F 2)] = 0.050
wR(F 2) = 0.122
S = 1.03
2470 reflections
191 parameters
H-atom parameters constrained
Δρmax = 0.14 e Å−3
Δρmin = −0.21 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021052/bh2356sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021052/bh2356Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811021052/bh2356Isup3.cdx
Supplementary material file. DOI: 10.1107/S1600536811021052/bh2356Isup4.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Acknowledgments
The authors thank the National Natural Science Foundation of China (grant No. 20772096) for financial support and Dr Yong-Liang Shao from the Center of Testing and Analysis, Lanzhou University, for the structure determination.
supplementary crystallographic information
Comment
Nitriles are important synthetic intermediates in organic synthesis, because of their easy preparations and versatile transformations (e.g. Yang, Wu & Chen, 2010). Furthermore, nitriles usually exhibit important biological and pharmacological activity. For example, many nitrile-containing pharmaceuticals are widely used in clinical treatments (Fleming et al., 2010).
Here we report on the crystal structure of the title compound, C16H12N2O3 (Fig. 1). In the structure, two aromatic rings are planar (the mean deviation from plane of the benzene ring carrying C1 is 0.0025 Å and the corresponding value of the phenyl ring carrying C10 is 0.0043 Å), but they make a large dihedral angle of 67.6 (1)°, which may be caused by the carbon chain of the bridging section that can rotate freely. From the packing diagram (Fig. 2), it can be seen that the molecules of the title compound, which display a similar V-shaped conformation, are interlayed along the a axis to form a crab-like motif and these crab-like motifs are repeatedly arranged to generate the final crystal structure.
Experimental
After Cs2CO3 (0.5 mg, 0.0015 mmol), (E)-3-(3-nitrophenyl)-1-phenylprop-2-en-1-one (76.0 mg, 0.3 mmol), and dioxane (0.5 ml) were charged into a dry Schlenk tube equipped with cold finger under argon, Me3SiCN (57 ml, 0.45 mmol) and H2O (22 ml, 1.2 mmol) were added. The reaction mixture was refluxed until the reaction was complete (monitored by TLC). Then, H2O (2 ml) was added at r.t. and the resulting mixture was extracted with EtOAc (5 ml). The extract was washed with H2O (2 ml), brine (3 ml), dried (Na2SO4), and concentrated. The crude product was purified by flash column chromatography on silica gel (PE–EtOAc, 10:1) to afford pure title compound as a yellowish solid (75.7 mg, 90% yield), as previously reported (Yang et al., 2009; Yang, Shen & Chen, 2010). Colorless single crystals of the title compound suitable for X-ray structure determination were obtained by vapour diffusion of petroleum ether into its ethyl acetate solution at room temperature.
Refinement
All hydrogen atoms bonded to carbon were introduced to idealized positions and allowed to ride on their parent atoms.
Figures
Fig. 1.
Thermal ellipsoid plot of the title compound at the 30% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.
Fig. 2.
Packing diagram of the title compound; all hydrogen atoms bonded to carbon are omitted for clarity.
Crystal data
| C16H12N2O3 | F(000) = 1168 |
| Mr = 280.28 | Dx = 1.384 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 1926 reflections |
| a = 10.105 (9) Å | θ = 2.6–24.8° |
| b = 8.485 (8) Å | µ = 0.10 mm−1 |
| c = 31.37 (3) Å | T = 296 K |
| V = 2690 (4) Å3 | Block, colourless |
| Z = 8 | 0.28 × 0.25 × 0.24 mm |
Data collection
| Bruker APEXII CCD diffractometer | 2470 independent reflections |
| Radiation source: fine-focus sealed tube | 1541 reflections with I > 2σ(I) |
| graphite | Rint = 0.064 |
| φ and ω scans | θmax = 25.5°, θmin = 2.6° |
| Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→9 |
| Tmin = 0.973, Tmax = 0.977 | k = −10→10 |
| 11482 measured reflections | l = −36→38 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
| wR(F2) = 0.122 | w = 1/[σ2(Fo2) + (0.0432P)2 + 0.5508P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.03 | (Δ/σ)max < 0.001 |
| 2470 reflections | Δρmax = 0.14 e Å−3 |
| 191 parameters | Δρmin = −0.21 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 constraints | Extinction coefficient: 0.0057 (9) |
| Primary atom site location: structure-invariant direct methods |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.9659 (2) | 0.7730 (3) | 0.76158 (8) | 0.0531 (7) | |
| H1 | 1.0233 | 0.8327 | 0.7449 | 0.064* | |
| C2 | 0.9790 (3) | 0.7738 (3) | 0.80556 (8) | 0.0600 (7) | |
| H2 | 1.0458 | 0.8331 | 0.8182 | 0.072* | |
| C3 | 0.8944 (3) | 0.6881 (3) | 0.83050 (8) | 0.0611 (8) | |
| H3 | 0.9030 | 0.6898 | 0.8600 | 0.073* | |
| C4 | 0.7968 (3) | 0.5993 (3) | 0.81171 (8) | 0.0612 (8) | |
| H4 | 0.7392 | 0.5406 | 0.8286 | 0.073* | |
| C5 | 0.7838 (2) | 0.5969 (3) | 0.76813 (8) | 0.0529 (7) | |
| H5 | 0.7177 | 0.5359 | 0.7558 | 0.063* | |
| C6 | 0.8680 (2) | 0.6842 (2) | 0.74222 (7) | 0.0431 (6) | |
| C7 | 0.8505 (3) | 0.6785 (3) | 0.69527 (7) | 0.0462 (6) | |
| C8 | 0.9342 (2) | 0.7828 (3) | 0.66743 (7) | 0.0472 (6) | |
| H8A | 1.0267 | 0.7642 | 0.6740 | 0.057* | |
| H8B | 0.9148 | 0.8919 | 0.6741 | 0.057* | |
| C9 | 0.9127 (2) | 0.7566 (3) | 0.61978 (7) | 0.0470 (6) | |
| H9 | 0.8180 | 0.7682 | 0.6139 | 0.056* | |
| C10 | 0.9863 (2) | 0.8761 (2) | 0.59265 (6) | 0.0411 (6) | |
| C11 | 1.1213 (3) | 0.8670 (3) | 0.58598 (7) | 0.0505 (6) | |
| H11 | 1.1692 | 0.7857 | 0.5985 | 0.061* | |
| C12 | 1.1858 (3) | 0.9763 (3) | 0.56111 (8) | 0.0555 (7) | |
| H12 | 1.2767 | 0.9683 | 0.5570 | 0.067* | |
| C13 | 1.1164 (3) | 1.0971 (3) | 0.54237 (7) | 0.0512 (7) | |
| H13 | 1.1588 | 1.1705 | 0.5251 | 0.061* | |
| C14 | 0.9831 (3) | 1.1064 (2) | 0.54980 (6) | 0.0408 (6) | |
| C15 | 0.9168 (2) | 0.9985 (2) | 0.57425 (6) | 0.0425 (6) | |
| H15 | 0.8260 | 1.0075 | 0.5784 | 0.051* | |
| C16 | 0.9514 (3) | 0.5952 (3) | 0.60812 (7) | 0.0543 (7) | |
| N1 | 0.9820 (3) | 0.4705 (3) | 0.60021 (7) | 0.0789 (8) | |
| N2 | 0.9061 (3) | 1.2315 (2) | 0.52900 (6) | 0.0551 (6) | |
| O1 | 0.77009 (19) | 0.5898 (2) | 0.67920 (5) | 0.0685 (6) | |
| O2 | 0.7895 (2) | 1.2441 (2) | 0.53819 (6) | 0.0762 (6) | |
| O3 | 0.9621 (2) | 1.3169 (2) | 0.50346 (6) | 0.0822 (7) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0547 (19) | 0.0492 (15) | 0.0554 (16) | −0.0029 (13) | 0.0082 (13) | −0.0014 (11) |
| C2 | 0.063 (2) | 0.0625 (17) | 0.0547 (16) | 0.0048 (15) | −0.0027 (14) | −0.0084 (13) |
| C3 | 0.075 (2) | 0.0583 (16) | 0.0504 (15) | 0.0120 (16) | 0.0040 (15) | 0.0060 (13) |
| C4 | 0.068 (2) | 0.0549 (16) | 0.0612 (17) | 0.0003 (15) | 0.0160 (15) | 0.0127 (13) |
| C5 | 0.0537 (18) | 0.0455 (14) | 0.0595 (16) | −0.0052 (13) | 0.0064 (13) | 0.0021 (11) |
| C6 | 0.0445 (15) | 0.0328 (11) | 0.0520 (14) | 0.0030 (11) | 0.0029 (12) | −0.0005 (10) |
| C7 | 0.0465 (17) | 0.0381 (12) | 0.0539 (14) | 0.0004 (12) | 0.0034 (12) | −0.0021 (11) |
| C8 | 0.0552 (17) | 0.0396 (13) | 0.0469 (13) | −0.0003 (12) | 0.0044 (12) | −0.0019 (10) |
| C9 | 0.0488 (16) | 0.0423 (13) | 0.0498 (14) | 0.0000 (12) | −0.0024 (12) | 0.0033 (11) |
| C10 | 0.0458 (16) | 0.0380 (13) | 0.0396 (12) | 0.0008 (12) | −0.0016 (11) | −0.0032 (9) |
| C11 | 0.0514 (18) | 0.0459 (14) | 0.0541 (14) | 0.0061 (13) | −0.0062 (13) | −0.0009 (11) |
| C12 | 0.0466 (17) | 0.0611 (17) | 0.0588 (15) | −0.0019 (14) | 0.0072 (13) | −0.0091 (13) |
| C13 | 0.065 (2) | 0.0471 (15) | 0.0418 (13) | −0.0128 (14) | 0.0069 (13) | −0.0057 (11) |
| C14 | 0.0525 (18) | 0.0373 (13) | 0.0327 (11) | −0.0009 (12) | −0.0002 (11) | −0.0023 (9) |
| C15 | 0.0462 (15) | 0.0418 (13) | 0.0395 (12) | 0.0016 (12) | 0.0023 (11) | −0.0047 (10) |
| C16 | 0.076 (2) | 0.0431 (14) | 0.0434 (13) | −0.0050 (14) | 0.0011 (13) | 0.0012 (11) |
| N1 | 0.130 (2) | 0.0490 (14) | 0.0580 (13) | 0.0020 (15) | 0.0080 (14) | −0.0041 (11) |
| N2 | 0.0806 (19) | 0.0456 (13) | 0.0390 (11) | 0.0003 (13) | −0.0050 (12) | 0.0016 (9) |
| O1 | 0.0680 (14) | 0.0775 (13) | 0.0598 (11) | −0.0274 (11) | 0.0011 (10) | −0.0029 (10) |
| O2 | 0.0735 (16) | 0.0810 (14) | 0.0740 (13) | 0.0222 (12) | −0.0015 (12) | 0.0186 (10) |
| O3 | 0.1196 (19) | 0.0640 (12) | 0.0631 (12) | −0.0041 (12) | 0.0080 (12) | 0.0230 (10) |
Geometric parameters (Å, °)
| C1—C6 | 1.384 (3) | C9—C16 | 1.470 (4) |
| C1—C2 | 1.386 (4) | C9—C10 | 1.518 (3) |
| C1—H1 | 0.9300 | C9—H9 | 0.9800 |
| C2—C3 | 1.368 (4) | C10—C15 | 1.380 (3) |
| C2—H2 | 0.9300 | C10—C11 | 1.381 (3) |
| C3—C4 | 1.374 (4) | C11—C12 | 1.376 (3) |
| C3—H3 | 0.9300 | C11—H11 | 0.9300 |
| C4—C5 | 1.374 (4) | C12—C13 | 1.374 (3) |
| C4—H4 | 0.9300 | C12—H12 | 0.9300 |
| C5—C6 | 1.390 (3) | C13—C14 | 1.369 (4) |
| C5—H5 | 0.9300 | C13—H13 | 0.9300 |
| C6—C7 | 1.484 (3) | C14—C15 | 1.370 (3) |
| C7—O1 | 1.217 (3) | C14—N2 | 1.469 (3) |
| C7—C8 | 1.504 (3) | C15—H15 | 0.9300 |
| C8—C9 | 1.527 (3) | C16—N1 | 1.130 (3) |
| C8—H8A | 0.9700 | N2—O2 | 1.218 (3) |
| C8—H8B | 0.9700 | N2—O3 | 1.219 (3) |
| C6—C1—C2 | 120.5 (2) | C16—C9—C8 | 109.97 (19) |
| C6—C1—H1 | 119.7 | C10—C9—C8 | 112.46 (19) |
| C2—C1—H1 | 119.7 | C16—C9—H9 | 107.9 |
| C3—C2—C1 | 120.4 (3) | C10—C9—H9 | 107.9 |
| C3—C2—H2 | 119.8 | C8—C9—H9 | 107.9 |
| C1—C2—H2 | 119.8 | C15—C10—C11 | 118.8 (2) |
| C2—C3—C4 | 119.7 (3) | C15—C10—C9 | 119.2 (2) |
| C2—C3—H3 | 120.2 | C11—C10—C9 | 122.1 (2) |
| C4—C3—H3 | 120.2 | C12—C11—C10 | 121.0 (2) |
| C3—C4—C5 | 120.2 (3) | C12—C11—H11 | 119.5 |
| C3—C4—H4 | 119.9 | C10—C11—H11 | 119.5 |
| C5—C4—H4 | 119.9 | C13—C12—C11 | 120.3 (3) |
| C4—C5—C6 | 121.1 (2) | C13—C12—H12 | 119.9 |
| C4—C5—H5 | 119.5 | C11—C12—H12 | 119.9 |
| C6—C5—H5 | 119.5 | C14—C13—C12 | 118.2 (2) |
| C1—C6—C5 | 118.1 (2) | C14—C13—H13 | 120.9 |
| C1—C6—C7 | 122.6 (2) | C12—C13—H13 | 120.9 |
| C5—C6—C7 | 119.3 (2) | C13—C14—C15 | 122.5 (2) |
| O1—C7—C6 | 120.7 (2) | C13—C14—N2 | 119.1 (2) |
| O1—C7—C8 | 119.9 (2) | C15—C14—N2 | 118.2 (2) |
| C6—C7—C8 | 119.3 (2) | C14—C15—C10 | 119.2 (2) |
| C7—C8—C9 | 113.8 (2) | C14—C15—H15 | 120.4 |
| C7—C8—H8A | 108.8 | C10—C15—H15 | 120.4 |
| C9—C8—H8A | 108.8 | N1—C16—C9 | 178.2 (3) |
| C7—C8—H8B | 108.8 | O2—N2—O3 | 123.5 (2) |
| C9—C8—H8B | 108.8 | O2—N2—C14 | 118.1 (2) |
| H8A—C8—H8B | 107.7 | O3—N2—C14 | 118.4 (3) |
| C16—C9—C10 | 110.6 (2) | ||
| C6—C1—C2—C3 | −0.7 (4) | C8—C9—C10—C15 | −103.3 (2) |
| C1—C2—C3—C4 | 0.7 (4) | C16—C9—C10—C11 | −47.2 (3) |
| C2—C3—C4—C5 | −0.2 (4) | C8—C9—C10—C11 | 76.2 (3) |
| C3—C4—C5—C6 | −0.4 (4) | C15—C10—C11—C12 | −0.7 (3) |
| C2—C1—C6—C5 | 0.2 (3) | C9—C10—C11—C12 | 179.7 (2) |
| C2—C1—C6—C7 | −179.5 (2) | C10—C11—C12—C13 | 0.0 (4) |
| C4—C5—C6—C1 | 0.4 (4) | C11—C12—C13—C14 | 1.1 (3) |
| C4—C5—C6—C7 | −179.9 (2) | C12—C13—C14—C15 | −1.5 (3) |
| C1—C6—C7—O1 | 174.3 (2) | C12—C13—C14—N2 | −178.05 (19) |
| C5—C6—C7—O1 | −5.4 (3) | C13—C14—C15—C10 | 0.7 (3) |
| C1—C6—C7—C8 | −5.2 (3) | N2—C14—C15—C10 | 177.34 (18) |
| C5—C6—C7—C8 | 175.1 (2) | C11—C10—C15—C14 | 0.4 (3) |
| O1—C7—C8—C9 | −3.5 (3) | C9—C10—C15—C14 | 179.96 (19) |
| C6—C7—C8—C9 | 176.0 (2) | C13—C14—N2—O2 | −175.3 (2) |
| C7—C8—C9—C16 | −62.9 (3) | C15—C14—N2—O2 | 8.0 (3) |
| C7—C8—C9—C10 | 173.33 (19) | C13—C14—N2—O3 | 4.9 (3) |
| C16—C9—C10—C15 | 133.2 (2) | C15—C14—N2—O3 | −171.9 (2) |
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BH2356).
References
- Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Fleming, F. F., Yao, L., Ravikumar, P. C., Funk, L. & Shook, B. C. (2010). J. Med. Chem. 53, 7902–7917. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Yang, J., Shen, Y. & Chen, F.-X. (2010). Synthesis, pp. 1325–1333.
- Yang, J., Wang, Y., Wu, S. & Chen, F.-X. (2009). Synlett, pp. 3365–3367.
- Yang, J., Wu, S. & Chen, F.-X. (2010). Synlett, pp. 2725–2728.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021052/bh2356sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021052/bh2356Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811021052/bh2356Isup3.cdx
Supplementary material file. DOI: 10.1107/S1600536811021052/bh2356Isup4.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


