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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 30;67(Pt 7):m1007. doi: 10.1107/S1600536811024792

Bis(2-propyl-1H-imidazol-3-ium) bis­(pyridine-2,6-dicarboxyl­ato-κ3 O 2,N,O 6)cadmate(II)

Gui-Ying Dong a,*, Tong-Fei Liu a, Cui-Hong He a, Xiao-Chen Deng b, Xiao-Ge Shi b
PMCID: PMC3151894  PMID: 21836832

Abstract

The title salt, (C6H11N2)2[Cd(C7H3NO4)2], displays a discrete mononuclear structure, in which the central CdII atom is six-coordinated in a distorted octa­hedral coordination geometry by two N and four O atoms from two different pyridine-2,6-dicarboxyl­ate anions in an O 2,N,O 6-tridentate chelation mode. The crystal packing is stabilized by N—H⋯O hydrogen bonds and π–π inter­actions [centroid–centroid distance = 3.576 (5) Å].

Related literature

For background to and the biological activity of pyridine-2,6-dicarb­oxy­lic acid, see: Hay et al. (2003). For related complexes, see: Dong et al. (2006); Guerriero et al. (1987); Kjell et al. (1993); Abboud et al. (1998). graphic file with name e-67-m1007-scheme1.jpg

Experimental

Crystal data

  • (C6H11N2)2[Cd(C7H3NO4)2]

  • M r = 664.95

  • Monoclinic, Inline graphic

  • a = 19.928 (4) Å

  • b = 9.5038 (19) Å

  • c = 15.073 (3) Å

  • β = 109.90 (3)°

  • V = 2684.2 (11) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.88 mm−1

  • T = 295 K

  • 0.22 × 0.12 × 0.08 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.796, T max = 0.808

  • 11223 measured reflections

  • 2364 independent reflections

  • 2238 reflections with I > 2σ(I)

  • R int = 0.034

Refinement

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.065

  • S = 1.19

  • 2364 reflections

  • 186 parameters

  • H-atom parameters constrained

  • Δρmax = 0.26 e Å−3

  • Δρmin = −0.46 e Å−3

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024792/aa2014sup1.cif

e-67-m1007-sup1.cif (20.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024792/aa2014Isup2.hkl

e-67-m1007-Isup2.hkl (116.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2B⋯O2i 0.86 1.93 2.753 (3) 160
N3—H3B⋯O4ii 0.86 1.84 2.690 (3) 173

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank Hebei United University for supporting this work.

supplementary crystallographic information

Comment

The pyridine-2,6-dicarboxylic (dipicolinic) acid is now recognized to be a major component of bacterial spores, which is used in a variety of processes as an enzyme inhibitor, plant preservative and food sanitizer (Hay et al. 2003). Pyridine-2,6-dicarboxylate has proved to be a versatile ligand with N,O-chelation and adopts diverse coordination modes (Guerriero et al., 1987; Kjell et al., 1993; Abboud et al., 1998; Dong et al.,2006). Recent efforts of our laboratory to synthesize coordination polymers with pyridine-2,6-dicarboxylic acid and 2-propylimidazole with transition metals resulted in the synthesis of the title complex (I).

In the title compound, the CdII is octahedrally coordinated by two tridentate dipicolinate ligands via their O and N atoms. In the crystal structure, adjacent molecules are linked via strong N—H···O hydrogen bonds into chains parallel to the b axis, see Fig. 2. Also there are π-π interactions between the centroids of adjacent pyridine rings. For Cg1 (the centroid of ring N1,C1—C5) and Cg1a (ring N1a,C1a—C5a) [symmetry code (a):-x,-y,-z + 1), the centroid–centroid distance is 3.576 (5)Å and the dihedral angle is 12.43 (3)°, this may further stabilize the structure.

Experimental

A mixture of cadmium(II) nitrate tetrahydrate (308.49 mg, 1 mmol) was added to a slightly basic (pH > 8) solution of pyridine-2,6-dicarboxylic acid (334 mg, 2 mmol), followed by the addition of 2-propylimidazole (440 mg, 4 mmol) with stirring. The reaction mixture was filtered and the filtrate was allowed to stay at room temperature. Colourless prism-shaped crystals were obtained after one week (yield: 0.132 g, 20%). Analysis for C26H28CdN6O8 (%): calculated C 46.96, H 4.24,N 12.64; found C 46.85, H 4.13 N 12.57.

Refinement

H atoms were placed in calculated positions, with N—H = 0.86 Å; C—H = 0.97 Å for methyl H-atoms and C—H = 0.93 Å for other H-atoms and refined in a riding model with Uiso(H) = 1.5Ueq(C) for methyl H-atoms and Uiso(H) = 1.2Ueq(C, N) for other atoms.

Figures

Fig. 1.

Fig. 1.

Fig. 1. The molecular structure of (I), showing displacement ellipsoids at the 30% probability level. Symmetry code: (i) -x, y, 0.5 - z.

Fig. 2.

Fig. 2.

A partial packing diagram of the title compound. Hydrogen bonds are shown as dashed lines and H atoms not involved in hydrogen bonding are omitted.

Crystal data

(C6H11N2)2[Cd(C7H3NO4)2] F(000) = 1352
Mr = 664.95 Dx = 1.645 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 5638 reflections
a = 19.928 (4) Å θ = 22.4–4.6°
b = 9.5038 (19) Å µ = 0.88 mm1
c = 15.073 (3) Å T = 295 K
β = 109.90 (3)° Prism, colourless
V = 2684.2 (11) Å3 0.22 × 0.12 × 0.08 mm
Z = 4

Data collection

Bruker SMART CCD area-detector diffractometer 2364 independent reflections
Radiation source: fine–focus sealed tube 2238 reflections with I > 2σ(I)
graphite Rint = 0.034
φ and ω scans θmax = 25.0°, θmin = 3.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −23→23
Tmin = 0.796, Tmax = 0.808 k = −11→11
11223 measured reflections l = −17→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.065 H-atom parameters constrained
S = 1.19 w = 1/[σ2(Fo2) + (0.0218P)2 + 4.3339P] where P = (Fo2 + 2Fc2)/3
2364 reflections (Δ/σ)max < 0.001
186 parameters Δρmax = 0.26 e Å3
0 restraints Δρmin = −0.46 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cd1 0.0000 0.07339 (3) 0.2500 0.03025 (11)
O1 0.09384 (11) −0.0821 (2) 0.31049 (13) 0.0428 (5)
C7 0.13072 (14) −0.0697 (3) 0.39623 (19) 0.0301 (6)
N1 0.04450 (10) 0.0993 (2) 0.40666 (14) 0.0221 (5)
O3 −0.06932 (10) 0.2362 (2) 0.29862 (13) 0.0400 (5)
O2 0.18879 (10) −0.1286 (2) 0.43686 (14) 0.0413 (5)
O4 −0.07871 (12) 0.3529 (3) 0.42064 (15) 0.0513 (6)
C6 −0.05008 (14) 0.2656 (3) 0.3843 (2) 0.0309 (6)
C5 0.10172 (13) 0.0254 (3) 0.45517 (17) 0.0228 (5)
C1 0.01417 (13) 0.1878 (3) 0.44944 (18) 0.0243 (6)
C4 0.13092 (14) 0.0374 (3) 0.55192 (18) 0.0298 (6)
H4A 0.1713 −0.0139 0.5856 0.036*
C3 0.09920 (15) 0.1269 (3) 0.59761 (18) 0.0349 (7)
H3A 0.1173 0.1349 0.6630 0.042*
C2 0.04064 (14) 0.2043 (3) 0.54622 (18) 0.0321 (6)
H2A 0.0193 0.2667 0.5760 0.039*
N3 0.33043 (12) 0.0315 (2) 0.29967 (17) 0.0340 (6)
H3B 0.3571 −0.0311 0.3360 0.041*
C9 0.24342 (15) 0.1779 (3) 0.2381 (2) 0.0357 (7)
H9A 0.2019 0.2307 0.2254 0.043*
N2 0.29048 (11) 0.1827 (2) 0.18995 (16) 0.0313 (5)
H2B 0.2866 0.2357 0.1422 0.038*
C10 0.26839 (15) 0.0829 (3) 0.3068 (2) 0.0379 (7)
H10A 0.2476 0.0569 0.3511 0.045*
C8 0.34294 (14) 0.0927 (3) 0.2285 (2) 0.0316 (6)
C11 0.40311 (17) 0.0637 (4) 0.1952 (3) 0.0531 (9)
H11A 0.4345 −0.0051 0.2365 0.064*
H11B 0.4303 0.1495 0.1986 0.064*
C12 0.3781 (3) 0.0082 (5) 0.0936 (3) 0.0786 (14)
H12A 0.3508 0.0811 0.0517 0.094*
H12B 0.4196 −0.0118 0.0760 0.094*
C13 0.3335 (2) −0.1215 (5) 0.0797 (3) 0.0729 (13)
H13A 0.3195 −0.1505 0.0149 0.109*
H13B 0.2917 −0.1021 0.0956 0.109*
H13C 0.3605 −0.1951 0.1195 0.109*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cd1 0.03459 (18) 0.03409 (18) 0.01739 (15) 0.000 0.00275 (11) 0.000
O1 0.0528 (13) 0.0463 (12) 0.0258 (11) 0.0206 (11) 0.0090 (9) −0.0040 (9)
C7 0.0329 (15) 0.0278 (14) 0.0306 (15) 0.0010 (13) 0.0123 (12) 0.0042 (12)
N1 0.0216 (11) 0.0243 (12) 0.0198 (11) −0.0003 (9) 0.0062 (9) 0.0008 (9)
O3 0.0346 (11) 0.0486 (13) 0.0298 (11) 0.0154 (10) 0.0019 (9) 0.0016 (9)
O2 0.0328 (11) 0.0433 (12) 0.0431 (12) 0.0159 (10) 0.0071 (9) −0.0023 (10)
O4 0.0512 (14) 0.0585 (15) 0.0436 (13) 0.0309 (12) 0.0154 (11) −0.0012 (11)
C6 0.0260 (14) 0.0309 (15) 0.0352 (16) 0.0036 (12) 0.0095 (12) 0.0034 (13)
C5 0.0215 (13) 0.0229 (13) 0.0233 (13) −0.0009 (10) 0.0066 (10) 0.0028 (10)
C1 0.0243 (13) 0.0244 (13) 0.0255 (13) 0.0000 (11) 0.0101 (11) −0.0002 (11)
C4 0.0261 (14) 0.0337 (16) 0.0245 (14) 0.0010 (12) 0.0021 (11) 0.0051 (12)
C3 0.0371 (16) 0.0478 (18) 0.0173 (13) −0.0029 (14) 0.0062 (12) −0.0017 (12)
C2 0.0349 (16) 0.0370 (17) 0.0268 (14) −0.0008 (13) 0.0136 (12) −0.0059 (12)
N3 0.0331 (13) 0.0281 (13) 0.0395 (14) 0.0027 (10) 0.0107 (11) 0.0019 (11)
C9 0.0265 (14) 0.0336 (16) 0.0462 (18) 0.0023 (12) 0.0112 (13) −0.0047 (14)
N2 0.0296 (12) 0.0268 (12) 0.0373 (13) −0.0007 (10) 0.0114 (10) 0.0020 (10)
C10 0.0362 (16) 0.0394 (17) 0.0421 (17) −0.0022 (14) 0.0186 (13) −0.0046 (15)
C8 0.0252 (14) 0.0254 (15) 0.0439 (17) −0.0039 (12) 0.0115 (12) −0.0034 (13)
C11 0.0419 (18) 0.0431 (19) 0.087 (3) 0.0057 (16) 0.0383 (19) 0.0133 (19)
C12 0.111 (4) 0.076 (3) 0.081 (3) 0.046 (3) 0.075 (3) 0.034 (2)
C13 0.092 (3) 0.076 (3) 0.048 (2) 0.037 (3) 0.021 (2) −0.006 (2)

Geometric parameters (Å, °)

Cd1—N1 2.235 (2) C2—H2A 0.9300
Cd1—N1i 2.235 (2) N3—C8 1.316 (4)
Cd1—O1 2.313 (2) N3—C10 1.368 (4)
Cd1—O1i 2.313 (2) N3—H3B 0.8600
Cd1—O3i 2.351 (2) C9—C10 1.336 (4)
Cd1—O3 2.351 (2) C9—N2 1.368 (4)
O1—C7 1.256 (3) C9—H9A 0.9300
C7—O2 1.243 (3) N2—C8 1.323 (3)
C7—C5 1.513 (4) N2—H2B 0.8600
N1—C1 1.324 (3) C10—H10A 0.9300
N1—C5 1.326 (3) C8—C11 1.475 (4)
O3—C6 1.247 (3) C11—C12 1.534 (6)
O4—C6 1.236 (3) C11—H11A 0.9700
C6—C1 1.515 (4) C11—H11B 0.9700
C5—C4 1.379 (4) C12—C13 1.492 (6)
C1—C2 1.381 (4) C12—H12A 0.9700
C4—C3 1.376 (4) C12—H12B 0.9700
C4—H4A 0.9300 C13—H13A 0.9600
C3—C2 1.374 (4) C13—H13B 0.9600
C3—H3A 0.9300 C13—H13C 0.9600
N1—Cd1—N1i 167.37 (11) C2—C3—H3A 120.2
N1—Cd1—O1 71.16 (7) C3—C2—C1 118.7 (3)
N1i—Cd1—O1 117.61 (7) C3—C2—H2A 120.6
N1—Cd1—O1i 117.61 (7) C1—C2—H2A 120.6
N1i—Cd1—O1i 71.16 (7) C8—N3—C10 109.5 (2)
O1—Cd1—O1i 100.59 (11) C8—N3—H3B 125.3
N1—Cd1—O3i 101.12 (7) C10—N3—H3B 125.3
N1i—Cd1—O3i 70.27 (7) C10—C9—N2 107.0 (3)
O1—Cd1—O3i 93.52 (8) C10—C9—H9A 126.5
O1i—Cd1—O3i 141.21 (7) N2—C9—H9A 126.5
N1—Cd1—O3 70.27 (7) C8—N2—C9 109.1 (2)
N1i—Cd1—O3 101.12 (7) C8—N2—H2B 125.5
O1—Cd1—O3 141.21 (7) C9—N2—H2B 125.5
O1i—Cd1—O3 93.52 (8) C9—C10—N3 106.7 (3)
O3i—Cd1—O3 97.69 (11) C9—C10—H10A 126.6
C7—O1—Cd1 117.19 (17) N3—C10—H10A 126.6
O2—C7—O1 125.8 (3) N3—C8—N2 107.7 (2)
O2—C7—C5 117.2 (2) N3—C8—C11 126.6 (3)
O1—C7—C5 117.0 (2) N2—C8—C11 125.7 (3)
C1—N1—C5 121.1 (2) C8—C11—C12 112.3 (3)
C1—N1—Cd1 120.09 (16) C8—C11—H11A 109.2
C5—N1—Cd1 118.80 (16) C12—C11—H11A 109.2
C6—O3—Cd1 117.65 (17) C8—C11—H11B 109.2
O4—C6—O3 125.7 (3) C12—C11—H11B 109.2
O4—C6—C1 117.2 (2) H11A—C11—H11B 107.9
O3—C6—C1 117.1 (2) C13—C12—C11 113.6 (3)
N1—C5—C4 120.9 (2) C13—C12—H12A 108.9
N1—C5—C7 114.9 (2) C11—C12—H12A 108.9
C4—C5—C7 124.2 (2) C13—C12—H12B 108.9
N1—C1—C2 120.9 (2) C11—C12—H12B 108.9
N1—C1—C6 114.8 (2) H12A—C12—H12B 107.7
C2—C1—C6 124.3 (2) C12—C13—H13A 109.5
C3—C4—C5 118.7 (2) C12—C13—H13B 109.5
C3—C4—H4A 120.7 H13A—C13—H13B 109.5
C5—C4—H4A 120.7 C12—C13—H13C 109.5
C4—C3—C2 119.7 (2) H13A—C13—H13C 109.5
C4—C3—H3A 120.2 H13B—C13—H13C 109.5

Symmetry codes: (i) −x, y, −z+1/2.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2B···O2ii 0.86 1.93 2.753 (3) 160
N3—H3B···O4iii 0.86 1.84 2.690 (3) 173

Symmetry codes: (ii) −x+1/2, y+1/2, −z+1/2; (iii) x+1/2, y−1/2, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: AA2014).

References

  1. Abboud, K. A., Xu, C. & Drago, R. S. (1998). Acta Cryst. C54, 1270–1273.
  2. Bruker (1998). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Dong, G.-Y., Cui, G.-H. & Wang, S.-C. (2006). Acta Cryst. E62, m606–m607.
  4. Guerriero, P., Casellato, U., Sitran, S., Vigato, P. A. & Graziani, R. (1987). Inorg. Chim. Acta, 133, 337–345.
  5. Hay, M. P., Anderson, R. F., Ferry, D. M., Wilson, W. R. & Denny, W. A. (2003). J. Med. Chem. 46, 5533–5545. [DOI] [PubMed]
  6. Kjell, H., Martin, L., Goran, S. & Jorgen, A. (1993). Acta Chem. Scand. 47, 449–455.
  7. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024792/aa2014sup1.cif

e-67-m1007-sup1.cif (20.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024792/aa2014Isup2.hkl

e-67-m1007-Isup2.hkl (116.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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