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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 30;67(Pt 7):o1842–o1843. doi: 10.1107/S1600536811024688

10α-Hy­droxy-4,9-dimethyl-13-[(pyrrol­idin-1-yl)meth­yl]-3,8,15-trioxatetra­cyclo­[10.3.0.02,4.07,9]penta­decan-14-one

Mohamed Moumou a,*, Ahmed Benharref a, Moha Berraho a, Daniel Avignant b, Abdelghani Oudahmane b, Mohamed Akssira c
PMCID: PMC3151905  PMID: 21837209

Abstract

The title compound, C19H29NO5, was synthesized from 9α-hy­droxy­parthenolide (9α-hy­droxy-4,8-dimethyl-12-methyl­ene-3,14-dioxatricyclo­[9.3.0.02,4]tetra­dec-7-en-13-one), which was isolated from the chloro­form extract of the aerial parts of Anvillea radiata. The mol­ecule is built up from two fused five- and ten-membered rings with the (pyrrolidin-4-yl)methyl group as a substituent. The two five-membered ring display the same envelope conformations, whereas the ten-membered ring adopts an approximate chair–chair conformation. The dihedral angle between the ten-membered ring and the lactone ring is 21.81 (9)°. An intra­molecular O—H⋯N hydrogen bond stabilizes the mol­ecular conformation. In the crystal, inter­molecular C—H⋯O inter­actions link the mol­ecules into chains parallel to the c axis.

Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: El Hassany et al. (2004). For reactivity of this sesquiterpene see: Der-Ren et al. (2006); Neelakantan et al. (2009); Neukirch et al. (2003). For ring puckering parameters, see: Cremer & Pople (1975). For conformations of ten-membered rings, see: Castaneda-Acosta et al. (1997). For related structures, see: Moumou et al. (2010); Watson & Zabel (1982).graphic file with name e-67-o1842-scheme1.jpg

Experimental

Crystal data

  • C19H29NO5

  • M r = 351.43

  • Orthorhombic, Inline graphic

  • a = 8.0714 (2) Å

  • b = 10.4571 (3) Å

  • c = 21.5816 (8) Å

  • V = 1821.56 (10) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 298 K

  • 0.89 × 0.46 × 0.21 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • 8707 measured reflections

  • 2122 independent reflections

  • 1660 reflections with I > 2σ(I)

  • R int = 0.034

Refinement

  • R[F 2 > 2σ(F 2)] = 0.038

  • wR(F 2) = 0.098

  • S = 1.03

  • 2122 reflections

  • 229 parameters

  • H-atom parameters constrained

  • Δρmax = 0.17 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2 and SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024688/om2443sup1.cif

e-67-o1842-sup1.cif (19.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024688/om2443Isup2.hkl

e-67-o1842-Isup2.hkl (102.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811024688/om2443Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3⋯N 0.82 2.04 2.851 (2) 172
C9—H9⋯O4i 0.98 2.38 3.260 (2) 149
C10—H10⋯O2ii 0.98 2.46 3.392 (3) 158
C19—H19B⋯O5iii 0.97 2.59 3.357 (3) 136

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank the Unit of Support for Technical and Scientific Research (UATRS, CNRST) for the X-ray measurements.

supplementary crystallographic information

Comment

Our work lies within the framework of the valorization of medicinals plants and concerning the Anvillea radiata. The main constituent of the chloroform extract of aerial parts of this plant is 9α-hydroxypartenolide (El Hassany et al., 2004). The reactivity of this sesquiterpene lactone and its derivatives has been the subject of several studies (Neukirch et al., 2003; Der-Ren et al., 2006; Neelakantan et al., 2009), in order to prepare products with a high added value that can be used in the pharmacology industry. In this context, we have treated the 9α-hydroxypartenolide with one equivalent of meta-chloroperbenzoic acid (mCPBA), as we have done for its isomer the 9β-hydroxypartenolide (Moumou et al.,2010), and we got the 6β,7α-epoxy-9α-hydroxypartenolide in a yield of 75% (see Figure 3). This latter was treated with an equivalent of pyrrolodine and gives the title compound (I) in a yield of 95%. The molecule contains two fused rings which exhibit different conformations with a pyrolidin ring as a substituent to the lactone ring. The molecular structure of (I), Fig. 1, shows that the two five membered rings adopt an envelope conformation, as indicated by Cremer & Pople (1975) puckering parameters Q = 0.298 (2) Å and φ = 77.5 (4)° for the lactone ring and Q = 0.362 (3) Å, φ2 = 6.4 (6)° for the pyrolidin ring. The ten-membered ring displays an approximate chair-chair conformation, this is the typical conformation observed for other sesquiterpenes lactones (Moumou et al., 2010; Watson & Zabel, 1982; Castaneda-Acosta et al., 1997). In the crystal structure, molecules are linked into supramolecular chains (Fig. 2) parallel to the c axis by C—H···O hydrogen bonds (Table 1). In addition an intramolecular O—H···N hydrogen bond is also observed.

Experimental

The mixture of 6β,7α-epoxy-9α hydoxy partenolide (0.5 g, 2 mmol) and one equivalent of pyrolidine in EtOH (20 ml) was stirred for one night at room temperature. The next day the reaction was stopped by adding water (10 ml) and extracted three times with ethyl acetate (3 x 20 ml). The combined organic layers were dried over anhydrous MgSO4, filtered and concentrated under vacuum to give 666 mg (1.9 mmol) of solid which was recrystallized in ethyl acetate.

Refinement

All H atoms were fixed geometrically and treated as riding with C—H = 0.96 Å (methyl), 0.97 Å (methylene), 0. 98Å (methine) with Uiso(H) = 1.2Ueq (methylene, methine) or Uiso(H) = 1.5Ueq (methyl, OH). In the absence of significant anomalous scattering, the absolute configuration could not be reliably determined and thus 1295 Friedel pairs were merged and any references to the Flack parameter were removed.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

Packing view showing the C–H···O and O–H···N hydrogen bonds as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity.

Fig. 3.

Fig. 3.

Synthesis of the title compound.

Crystal data

C19H29NO5 F(000) = 760
Mr = 351.43 Dx = 1.281 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 3417 reflections
a = 8.0714 (2) Å θ = 2.7–26.4°
b = 10.4571 (3) Å µ = 0.09 mm1
c = 21.5816 (8) Å T = 298 K
V = 1821.56 (10) Å3 Prism, colourless
Z = 4 0.89 × 0.46 × 0.21 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 1660 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.034
graphite θmax = 26.4°, θmin = 2.7°
φ and ω scans h = −7→10
8707 measured reflections k = −13→10
2122 independent reflections l = −26→25

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098 H-atom parameters constrained
S = 1.03 w = 1/[σ2(Fo2) + (0.0589P)2] where P = (Fo2 + 2Fc2)/3
2122 reflections (Δ/σ)max < 0.001
229 parameters Δρmax = 0.17 e Å3
0 restraints Δρmin = −0.15 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.2294 (3) 0.5169 (2) 0.08783 (11) 0.0361 (6)
H1 0.1851 0.5945 0.0685 0.043*
C2 0.3205 (3) 0.5410 (2) 0.14572 (11) 0.0399 (6)
C3 0.3293 (3) 0.6785 (2) 0.16551 (12) 0.0483 (7)
H3A 0.3354 0.6820 0.2104 0.058*
H3B 0.2280 0.7212 0.1530 0.058*
C4 0.4776 (3) 0.7513 (3) 0.13836 (13) 0.0491 (7)
H4A 0.4573 0.8423 0.1424 0.059*
H4B 0.5754 0.7311 0.1626 0.059*
C5 0.5120 (3) 0.7213 (2) 0.07148 (12) 0.0377 (6)
H5 0.4129 0.7113 0.0457 0.045*
C6 0.6598 (3) 0.6526 (2) 0.04855 (11) 0.0361 (5)
C7 0.6555 (3) 0.5740 (2) −0.01081 (10) 0.0336 (5)
H7 0.7700 0.5517 −0.0214 0.040*
C8 0.5592 (3) 0.4481 (2) −0.00134 (11) 0.0351 (5)
H8A 0.6027 0.3845 −0.0297 0.042*
H8B 0.5792 0.4177 0.0405 0.042*
C9 0.3708 (3) 0.4590 (2) −0.01138 (10) 0.0325 (5)
H9 0.3454 0.5497 −0.0179 0.039*
C10 0.2637 (3) 0.4126 (2) 0.04320 (12) 0.0367 (6)
H10 0.3146 0.3389 0.0639 0.044*
C11 0.2981 (3) 0.3852 (2) −0.06591 (12) 0.0410 (6)
H11 0.3523 0.3016 −0.0685 0.049*
C12 0.1199 (3) 0.3663 (2) −0.04627 (14) 0.0491 (7)
C13 0.7995 (3) 0.6124 (3) 0.09028 (13) 0.0549 (8)
H13A 0.9032 0.6363 0.0718 0.082*
H13B 0.7963 0.5214 0.0959 0.082*
H13C 0.7881 0.6539 0.1297 0.082*
C14 0.4501 (3) 0.4522 (3) 0.17126 (13) 0.0557 (7)
H14A 0.4431 0.4509 0.2157 0.084*
H14B 0.5580 0.4814 0.1590 0.084*
H14C 0.4321 0.3675 0.1554 0.084*
C15 0.3068 (3) 0.4494 (3) −0.12859 (12) 0.0469 (6)
H15A 0.2480 0.3971 −0.1585 0.056*
H15B 0.2506 0.5312 −0.1262 0.056*
C16 0.5619 (4) 0.3520 (3) −0.16867 (15) 0.0686 (9)
H16A 0.4884 0.2950 −0.1910 0.082*
H16B 0.6043 0.3079 −0.1324 0.082*
C17 0.7000 (5) 0.3955 (4) −0.2091 (2) 0.0935 (13)
H17A 0.7218 0.3332 −0.2414 0.112*
H17B 0.8003 0.4078 −0.1851 0.112*
C18 0.6423 (4) 0.5219 (3) −0.23718 (14) 0.0664 (9)
H18A 0.7210 0.5895 −0.2283 0.080*
H18B 0.6301 0.5143 −0.2817 0.080*
C19 0.4779 (4) 0.5494 (3) −0.20714 (12) 0.0553 (7)
H19A 0.4686 0.6394 −0.1968 0.066*
H19B 0.3875 0.5265 −0.2346 0.066*
N 0.4750 (3) 0.47021 (19) −0.15073 (9) 0.0435 (5)
O1 0.1047 (2) 0.37802 (16) 0.01525 (9) 0.0474 (5)
O2 0.0011 (3) 0.3449 (2) −0.07852 (11) 0.0696 (6)
O3 0.5907 (2) 0.64734 (16) −0.06008 (8) 0.0415 (4)
H3 0.5656 0.5999 −0.0888 0.062*
O4 0.6462 (2) 0.78993 (16) 0.04219 (8) 0.0460 (5)
O5 0.1545 (2) 0.48703 (17) 0.14653 (8) 0.0503 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0278 (11) 0.0437 (13) 0.0369 (13) −0.0005 (11) 0.0061 (10) 0.0094 (10)
C2 0.0353 (13) 0.0507 (14) 0.0338 (13) −0.0003 (12) 0.0068 (10) 0.0073 (12)
C3 0.0521 (15) 0.0586 (16) 0.0340 (14) 0.0070 (13) 0.0051 (12) −0.0027 (12)
C4 0.0538 (16) 0.0513 (15) 0.0423 (16) −0.0036 (13) 0.0025 (13) −0.0083 (12)
C5 0.0378 (13) 0.0365 (12) 0.0389 (14) −0.0073 (12) 0.0015 (11) 0.0009 (11)
C6 0.0270 (11) 0.0401 (13) 0.0411 (14) −0.0065 (11) −0.0007 (10) 0.0050 (11)
C7 0.0269 (11) 0.0398 (12) 0.0341 (13) 0.0029 (11) 0.0037 (10) 0.0065 (10)
C8 0.0352 (12) 0.0341 (11) 0.0359 (13) 0.0025 (11) 0.0024 (10) 0.0030 (10)
C9 0.0337 (11) 0.0284 (10) 0.0354 (12) 0.0000 (10) −0.0004 (10) 0.0027 (10)
C10 0.0304 (12) 0.0348 (12) 0.0450 (15) −0.0028 (10) −0.0001 (11) 0.0096 (11)
C11 0.0444 (14) 0.0343 (12) 0.0442 (15) 0.0005 (12) −0.0029 (12) −0.0032 (11)
C12 0.0517 (17) 0.0366 (13) 0.0591 (19) −0.0096 (14) −0.0047 (15) 0.0015 (13)
C13 0.0385 (15) 0.077 (2) 0.0487 (17) −0.0019 (14) −0.0071 (13) 0.0033 (14)
C14 0.0566 (16) 0.0671 (17) 0.0434 (16) 0.0044 (16) −0.0038 (13) 0.0116 (15)
C15 0.0485 (15) 0.0516 (14) 0.0405 (15) 0.0041 (14) −0.0047 (12) −0.0067 (12)
C16 0.079 (2) 0.0623 (18) 0.064 (2) 0.0231 (18) 0.0107 (19) −0.0128 (16)
C17 0.083 (3) 0.116 (3) 0.082 (3) 0.026 (2) 0.027 (2) −0.008 (2)
C18 0.070 (2) 0.081 (2) 0.0476 (18) −0.0066 (19) 0.0082 (16) −0.0081 (16)
C19 0.0636 (17) 0.0695 (18) 0.0327 (14) 0.0029 (17) −0.0035 (13) −0.0014 (14)
N 0.0512 (13) 0.0459 (12) 0.0333 (11) 0.0082 (11) −0.0027 (10) −0.0041 (9)
O1 0.0366 (10) 0.0480 (10) 0.0576 (12) −0.0131 (8) 0.0013 (9) 0.0040 (9)
O2 0.0568 (13) 0.0737 (14) 0.0784 (16) −0.0238 (12) −0.0205 (12) −0.0018 (12)
O3 0.0507 (10) 0.0409 (8) 0.0327 (10) −0.0062 (9) −0.0004 (8) 0.0074 (7)
O4 0.0488 (10) 0.0406 (9) 0.0485 (11) −0.0146 (8) 0.0053 (9) 0.0000 (8)
O5 0.0399 (9) 0.0666 (12) 0.0445 (11) −0.0044 (9) 0.0147 (8) 0.0106 (9)

Geometric parameters (Å, °)

C1—O5 1.438 (3) C10—H10 0.9800
C1—C2 1.472 (3) C11—C15 1.512 (4)
C1—C10 1.481 (3) C11—C12 1.512 (4)
C1—H1 0.9800 C11—H11 0.9800
C2—O5 1.454 (3) C12—O2 1.206 (3)
C2—C3 1.501 (4) C12—O1 1.339 (3)
C2—C14 1.504 (4) C13—H13A 0.9600
C3—C4 1.535 (4) C13—H13B 0.9600
C3—H3A 0.9700 C13—H13C 0.9600
C3—H3B 0.9700 C14—H14A 0.9600
C4—C5 1.503 (4) C14—H14B 0.9600
C4—H4A 0.9700 C14—H14C 0.9600
C4—H4B 0.9700 C15—N 1.455 (3)
C5—O4 1.445 (3) C15—H15A 0.9700
C5—C6 1.478 (3) C15—H15B 0.9700
C5—H5 0.9800 C16—N 1.473 (3)
C6—O4 1.446 (3) C16—C17 1.487 (5)
C6—C13 1.503 (3) C16—H16A 0.9700
C6—C7 1.523 (3) C16—H16B 0.9700
C7—O3 1.412 (3) C17—C18 1.526 (5)
C7—C8 1.543 (3) C17—H17A 0.9700
C7—H7 0.9800 C17—H17B 0.9700
C8—C9 1.540 (3) C18—C19 1.504 (4)
C8—H8A 0.9700 C18—H18A 0.9700
C8—H8B 0.9700 C18—H18B 0.9700
C9—C11 1.525 (3) C19—N 1.473 (3)
C9—C10 1.540 (3) C19—H19A 0.9700
C9—H9 0.9800 C19—H19B 0.9700
C10—O1 1.464 (3) O3—H3 0.8200
O5—C1—C2 59.96 (15) C9—C10—H10 111.2
O5—C1—C10 119.5 (2) C15—C11—C12 110.7 (2)
C2—C1—C10 125.8 (2) C15—C11—C9 116.62 (19)
O5—C1—H1 113.7 C12—C11—C9 102.5 (2)
C2—C1—H1 113.7 C15—C11—H11 108.9
C10—C1—H1 113.7 C12—C11—H11 108.9
O5—C2—C1 58.87 (15) C9—C11—H11 108.9
O5—C2—C3 114.3 (2) O2—C12—O1 121.1 (3)
C1—C2—C3 115.4 (2) O2—C12—C11 128.2 (3)
O5—C2—C14 113.4 (2) O1—C12—C11 110.7 (2)
C1—C2—C14 123.6 (2) C6—C13—H13A 109.5
C3—C2—C14 117.0 (2) C6—C13—H13B 109.5
C2—C3—C4 113.8 (2) H13A—C13—H13B 109.5
C2—C3—H3A 108.8 C6—C13—H13C 109.5
C4—C3—H3A 108.8 H13A—C13—H13C 109.5
C2—C3—H3B 108.8 H13B—C13—H13C 109.5
C4—C3—H3B 108.8 C2—C14—H14A 109.5
H3A—C3—H3B 107.7 C2—C14—H14B 109.5
C5—C4—C3 114.0 (2) H14A—C14—H14B 109.5
C5—C4—H4A 108.7 C2—C14—H14C 109.5
C3—C4—H4A 108.7 H14A—C14—H14C 109.5
C5—C4—H4B 108.7 H14B—C14—H14C 109.5
C3—C4—H4B 108.7 N—C15—C11 113.8 (2)
H4A—C4—H4B 107.6 N—C15—H15A 108.8
O4—C5—C6 59.31 (14) C11—C15—H15A 108.8
O4—C5—C4 117.1 (2) N—C15—H15B 108.8
C6—C5—C4 124.9 (2) C11—C15—H15B 108.8
O4—C5—H5 114.6 H15A—C15—H15B 107.7
C6—C5—H5 114.6 N—C16—C17 104.8 (3)
C4—C5—H5 114.6 N—C16—H16A 110.8
O4—C6—C5 59.20 (15) C17—C16—H16A 110.8
O4—C6—C13 113.1 (2) N—C16—H16B 110.8
C5—C6—C13 122.7 (2) C17—C16—H16B 110.8
O4—C6—C7 117.0 (2) H16A—C16—H16B 108.9
C5—C6—C7 121.7 (2) C16—C17—C18 105.6 (3)
C13—C6—C7 111.7 (2) C16—C17—H17A 110.6
O3—C7—C6 110.42 (18) C18—C17—H17A 110.6
O3—C7—C8 112.11 (19) C16—C17—H17B 110.6
C6—C7—C8 111.14 (18) C18—C17—H17B 110.6
O3—C7—H7 107.7 H17A—C17—H17B 108.7
C6—C7—H7 107.7 C19—C18—C17 105.3 (3)
C8—C7—H7 107.7 C19—C18—H18A 110.7
C9—C8—C7 114.57 (19) C17—C18—H18A 110.7
C9—C8—H8A 108.6 C19—C18—H18B 110.7
C7—C8—H8A 108.6 C17—C18—H18B 110.7
C9—C8—H8B 108.6 H18A—C18—H18B 108.8
C7—C8—H8B 108.6 N—C19—C18 105.2 (2)
H8A—C8—H8B 107.6 N—C19—H19A 110.7
C11—C9—C10 102.40 (17) C18—C19—H19A 110.7
C11—C9—C8 116.8 (2) N—C19—H19B 110.7
C10—C9—C8 115.03 (19) C18—C19—H19B 110.7
C11—C9—H9 107.3 H19A—C19—H19B 108.8
C10—C9—H9 107.3 C15—N—C19 111.7 (2)
C8—C9—H9 107.3 C15—N—C16 113.9 (2)
O1—C10—C1 106.59 (19) C19—N—C16 104.3 (2)
O1—C10—C9 104.76 (18) C12—O1—C10 110.54 (19)
C1—C10—C9 111.73 (18) C7—O3—H3 109.5
O1—C10—H10 111.2 C5—O4—C6 61.49 (14)
C1—C10—H10 111.2 C1—O5—C2 61.17 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O3—H3···N 0.82 2.04 2.851 (2) 172
C9—H9···O4i 0.98 2.38 3.260 (2) 149
C10—H10···O2ii 0.98 2.46 3.392 (3) 158
C19—H19B···O5iii 0.97 2.59 3.357 (3) 136

Symmetry codes: (i) x−1/2, −y+3/2, −z; (ii) x+1/2, −y+1/2, −z; (iii) −x+1/2, −y+1, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: OM2443).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024688/om2443sup1.cif

e-67-o1842-sup1.cif (19.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024688/om2443Isup2.hkl

e-67-o1842-Isup2.hkl (102.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811024688/om2443Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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