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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 18;67(Pt 7):o1666. doi: 10.1107/S1600536811022082

Imidazo[1,2-b]isoquinoline-5,10-dione

Nassir N Al-Mohammed a,, Yatimah Alias a, Zanariah Abdullah a, Hamid Khaledi a,*
PMCID: PMC3151919  PMID: 21837065

Abstract

The title butterfly-shaped mol­ecule, C11H6N2O2, is folded slightly along the O=C⋯C=O line, the dihedral angle between the two parts being 6.42 (3)°. In the crystal, adjacent mol­ecules are linked through C—H⋯O hydrogen bonds into infinite layers parallel to the ac plane. The layers are further connected into a three-dimensional netweork via π–π inter­actions formed between pairs of anti­parallel arranged mol­ecules, with a centroid–centroid distance between the central six-membered ring and the benzene ring of 3.4349 (9) Å.

Related literature

For the structure of isoquinoline­dione-pyrrole fused system in 1,3-dinitro­pyrrolo­[1,2-b]isoquinoline-5,10-dione, see: Du & Hitchcock (1992).graphic file with name e-67-o1666-scheme1.jpg

Experimental

Crystal data

  • C11H6N2O2

  • M r = 198.18

  • Monoclinic, Inline graphic

  • a = 7.6518 (7) Å

  • b = 7.2469 (6) Å

  • c = 15.5197 (13) Å

  • β = 99.947 (1)°

  • V = 847.66 (13) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 100 K

  • 0.21 × 0.17 × 0.09 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.977, T max = 0.990

  • 4894 measured reflections

  • 1925 independent reflections

  • 1583 reflections with I > 2σ(I)

  • R int = 0.021

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.107

  • S = 1.04

  • 1925 reflections

  • 136 parameters

  • H-atom parameters constrained

  • Δρmax = 0.29 e Å−3

  • Δρmin = −0.22 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536811022082/gk2380sup1.cif

e-67-o1666-sup1.cif (13.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022082/gk2380Isup2.hkl

e-67-o1666-Isup2.hkl (94.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C2—H2⋯O1i 0.95 2.46 3.2828 (17) 146
C6—H6⋯O1ii 0.95 2.57 3.5190 (19) 179
C8—H8⋯O2iii 0.95 2.55 3.2233 (17) 128

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank the University of Malaya for funding this study (FRGS grant No. FP001/2010 A).

supplementary crystallographic information

Comment

This work reports the first crystal structure of an isoquinolinedione-fused imidazole. The structure of an isoquinolinedione-pyrrole fused system has been reported previously (Du & Hitchcock, 1992). The present molecule (Fig. 1) is almost planar (r.m.s deviation = 0.0718 Å) but slighly bent along the O=C···.C=O line with the corresponding dihedral angle of 6.42 (3)°. In the crystal, intermolecular C—H···O interactions (Table 1) connect the molecules into a two-dimensional array in the ac plane (Fig. 2). The isoquinoline rings of pairs of the molecule related by symmetry –x + 1, -y + 1, -z, are placed above each other in an anti-parallel manner with the centriods of the six-membered heterocyclic ring and the benzene ring at a distance of 3.4349 (9) Å.

Experimental

A solution of phthaloyl chloride (5.58 g, 27.5 mmol) in dry pyridine (20 ml) was added dropwise to a mixture of imidazole (1.7 g, 25 mmol) and bis (triphenylphosphine)palladium (II) chloride (0.87 g) in dry pyridine (15 ml) at 273 K. The mixture was refluxed for 4 h, then cooled to room temperature and poured into ice water (150 ml). The aqueous solution was extracted with chloroform and the chloroform solution was washed with 2 % aqueous HCl solution and distilled water (3 x15 ml). It was dried over magnesium sulfate and evaporated under vacuum. The amorphous residue was re-crystallized from acetonitrile to give yellow crystals of the title compound (m.p. = 232-234° C).

Refinement

Hydrogen atoms were placed at calculated positions and refined as riding atoms with C—H distance of 0.95 Å and with Uiso(H) set to 1.2 Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing displacement ellipsoids at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

The 2D-network formed by C—H···O hydrogen bonds.

Crystal data

C11H6N2O2 F(000) = 408
Mr = 198.18 Dx = 1.553 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 1521 reflections
a = 7.6518 (7) Å θ = 2.7–29.5°
b = 7.2469 (6) Å µ = 0.11 mm1
c = 15.5197 (13) Å T = 100 K
β = 99.947 (1)° Block, yellow
V = 847.66 (13) Å3 0.21 × 0.17 × 0.09 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 1925 independent reflections
Radiation source: fine-focus sealed tube 1583 reflections with I > 2σ(I)
graphite Rint = 0.021
φ and ω scans θmax = 27.5°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −9→9
Tmin = 0.977, Tmax = 0.990 k = −9→8
4894 measured reflections l = −20→19

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0535P)2 + 0.3219P] where P = (Fo2 + 2Fc2)/3
1925 reflections (Δ/σ)max < 0.001
136 parameters Δρmax = 0.29 e Å3
0 restraints Δρmin = −0.22 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.26338 (13) 0.48928 (15) 0.19588 (7) 0.0219 (3)
O2 0.82600 (13) 0.21685 (15) 0.07219 (7) 0.0224 (3)
N1 0.62688 (16) 0.52159 (17) 0.28827 (8) 0.0186 (3)
N2 0.70971 (15) 0.36883 (16) 0.17748 (7) 0.0152 (3)
C1 0.80899 (19) 0.5005 (2) 0.30252 (10) 0.0202 (3)
H1 0.8866 0.5453 0.3526 0.024*
C2 0.86301 (19) 0.4074 (2) 0.23580 (9) 0.0197 (3)
H2 0.9811 0.3757 0.2304 0.024*
C3 0.69589 (18) 0.28089 (19) 0.09539 (9) 0.0160 (3)
C4 0.51463 (18) 0.27899 (19) 0.04292 (9) 0.0154 (3)
C5 0.4917 (2) 0.20479 (19) −0.04108 (9) 0.0190 (3)
H5 0.5907 0.1567 −0.0632 0.023*
C6 0.3242 (2) 0.2012 (2) −0.09248 (10) 0.0222 (3)
H6 0.3089 0.1516 −0.1500 0.027*
C7 0.1790 (2) 0.2701 (2) −0.06005 (9) 0.0217 (3)
H7 0.0644 0.2665 −0.0953 0.026*
C8 0.20076 (18) 0.3441 (2) 0.02357 (9) 0.0186 (3)
H8 0.1011 0.3913 0.0454 0.022*
C9 0.36831 (18) 0.34932 (19) 0.07565 (9) 0.0150 (3)
C10 0.38834 (18) 0.43063 (19) 0.16455 (9) 0.0155 (3)
C11 0.57142 (18) 0.44126 (19) 0.21262 (9) 0.0151 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0171 (5) 0.0277 (6) 0.0215 (5) 0.0024 (4) 0.0055 (4) −0.0027 (4)
O2 0.0182 (5) 0.0241 (6) 0.0262 (6) 0.0027 (4) 0.0073 (4) −0.0027 (5)
N1 0.0194 (6) 0.0195 (6) 0.0161 (6) −0.0011 (5) 0.0012 (5) −0.0007 (5)
N2 0.0137 (6) 0.0157 (6) 0.0160 (6) −0.0003 (4) 0.0022 (4) 0.0007 (5)
C1 0.0191 (7) 0.0209 (7) 0.0189 (7) −0.0032 (6) −0.0013 (5) −0.0004 (6)
C2 0.0145 (7) 0.0201 (7) 0.0229 (7) −0.0012 (6) −0.0006 (5) 0.0029 (6)
C3 0.0179 (7) 0.0131 (6) 0.0175 (7) −0.0002 (5) 0.0044 (5) 0.0017 (5)
C4 0.0185 (7) 0.0120 (6) 0.0156 (7) −0.0010 (5) 0.0027 (5) 0.0027 (5)
C5 0.0265 (8) 0.0150 (7) 0.0165 (7) −0.0012 (6) 0.0064 (6) 0.0012 (6)
C6 0.0343 (9) 0.0166 (7) 0.0147 (7) −0.0056 (6) 0.0015 (6) 0.0003 (5)
C7 0.0226 (7) 0.0215 (8) 0.0186 (7) −0.0052 (6) −0.0037 (6) 0.0032 (6)
C8 0.0163 (7) 0.0195 (7) 0.0194 (7) −0.0017 (6) 0.0017 (5) 0.0029 (6)
C9 0.0169 (7) 0.0134 (7) 0.0146 (7) −0.0018 (5) 0.0024 (5) 0.0032 (5)
C10 0.0159 (7) 0.0146 (7) 0.0163 (7) −0.0007 (5) 0.0038 (5) 0.0021 (5)
C11 0.0155 (7) 0.0143 (7) 0.0160 (7) 0.0003 (5) 0.0043 (5) 0.0019 (5)

Geometric parameters (Å, °)

O1—C10 1.2215 (16) C4—C9 1.4027 (19)
O2—C3 1.2084 (17) C5—C6 1.388 (2)
N1—C11 1.3135 (18) C5—H5 0.9500
N1—C1 1.3812 (19) C6—C7 1.390 (2)
N2—C11 1.3754 (17) C6—H6 0.9500
N2—C2 1.3808 (18) C7—C8 1.387 (2)
N2—C3 1.4121 (18) C7—H7 0.9500
C1—C2 1.359 (2) C8—C9 1.3930 (19)
C1—H1 0.9500 C8—H8 0.9500
C2—H2 0.9500 C9—C10 1.4836 (19)
C3—C4 1.4821 (19) C10—C11 1.4710 (18)
C4—C5 1.3930 (19)
C11—N1—C1 104.80 (12) C5—C6—C7 120.15 (14)
C11—N2—C2 106.70 (12) C5—C6—H6 119.9
C11—N2—C3 125.95 (12) C7—C6—H6 119.9
C2—N2—C3 127.27 (12) C8—C7—C6 120.21 (14)
C2—C1—N1 111.36 (13) C8—C7—H7 119.9
C2—C1—H1 124.3 C6—C7—H7 119.9
N1—C1—H1 124.3 C7—C8—C9 120.21 (13)
C1—C2—N2 105.33 (13) C7—C8—H8 119.9
C1—C2—H2 127.3 C9—C8—H8 119.9
N2—C2—H2 127.3 C8—C9—C4 119.48 (13)
O2—C3—N2 120.33 (13) C8—C9—C10 119.16 (12)
O2—C3—C4 125.01 (13) C4—C9—C10 121.35 (12)
N2—C3—C4 114.65 (12) O1—C10—C11 121.49 (13)
C5—C4—C9 120.00 (13) O1—C10—C9 123.10 (13)
C5—C4—C3 118.17 (12) C11—C10—C9 115.39 (12)
C9—C4—C3 121.83 (12) N1—C11—N2 111.81 (12)
C6—C5—C4 119.95 (13) N1—C11—C10 127.51 (12)
C6—C5—H5 120.0 N2—C11—C10 120.63 (12)
C4—C5—H5 120.0

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C2—H2···O1i 0.95 2.46 3.2828 (17) 146
C6—H6···O1ii 0.95 2.57 3.5190 (19) 179
C8—H8···O2iii 0.95 2.55 3.2233 (17) 128

Symmetry codes: (i) x+1, y, z; (ii) x, −y+1/2, z−1/2; (iii) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2380).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem, 1, 189–191.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Du, M.-H. & Hitchcock, P. B. (1992). Acta Cryst. C48, 2058–2060.
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536811022082/gk2380sup1.cif

e-67-o1666-sup1.cif (13.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022082/gk2380Isup2.hkl

e-67-o1666-Isup2.hkl (94.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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