Abstract
In the title compound, C13H10FNO, the dihedral angle between the aromatic rings is 55.60 (8)°. In the crystal, molecules are linked by O—H—N hydrogen bonds, forming zigzag C(7) chains propagating in [101].
Related literature
For a related structure and background references, see: Sun et al. (2011 ▶). For related structures, see: Nie et al. (2008 ▶); Fun et al. (2008 ▶); Alhadi et al. (2008 ▶).
Experimental
Crystal data
C13H10FNO
M r = 215.22
Monoclinic,
a = 9.400 (5) Å
b = 12.213 (7) Å
c = 9.450 (5) Å
β = 104.666 (5)°
V = 1049.5 (10) Å3
Z = 4
Mo Kα radiation
μ = 0.10 mm−1
T = 296 K
0.25 × 0.23 × 0.22 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.976, T max = 0.979
5880 measured reflections
1935 independent reflections
1474 reflections with I > 2σ(I)
R int = 0.036
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.116
S = 1.09
1935 reflections
147 parameters
H-atom parameters constrained
Δρmax = 0.18 e Å−3
Δρmin = −0.19 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019921/hb5896sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019921/hb5896Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811019921/hb5896Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1A⋯N1i | 0.82 | 2.09 | 2.885 (2) | 163 |
Symmetry code: (i)
.
Acknowledgments
This project was supported by Zhejiang Provincial Natural Science Foundation of China (grant No. Y4110290).
supplementary crystallographic information
Comment
As part of our ongoing studies of Schiff bases (Sun et al., 2011), we report here the crystal structure of the title compound, (I). In (I) (Fig. 1), the bond lengths and angles are normal and comparable to the values observed in similar compounds (Nie et al., 2008; Fun et al., 2008; Alhadi et al., 2008). The dihedral angle between the two aromatic rings in the Schiff base molecule is 55.6 °, indicating that two these rings are not coplanar. Intermolecular O-H—N hydrogen bonds (Table 1) link the molecules along a axis (Fig. 2).
Experimental
A mixture of 4-chlorobenzaldehyde (5 mmol), 4-aminophenol (5 mmol) and methanol (40 ml) was refluxed for 2 h. It was then allowed to cool and filtered. Recrystallization of the crude product from methanol yielded yellow blocks of (I).
Refinement
H atoms were positioned geometrically and refined using the riding-model approximation, with C—H = 0.93–0.97 Å, O—H = 0.82 Å, and Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(O). In the absence of significant anomalous dispersion effects, Freidel pairs were merged.
Figures
Fig. 1.
The molecular structure of the title compounds with 50% probability displacement ellipsoids for non-hydrogen atoms.
Fig. 2.
Molecular packing of the title compound, viewed along the a axis. Hydrogen bonds are shown as dashed lines.
Crystal data
| C13H10FNO | F(000) = 448 |
| Mr = 215.22 | Dx = 1.362 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 2754 reflections |
| a = 9.400 (5) Å | θ = 2.7–28.2° |
| b = 12.213 (7) Å | µ = 0.10 mm−1 |
| c = 9.450 (5) Å | T = 296 K |
| β = 104.666 (5)° | Block, yellow |
| V = 1049.5 (10) Å3 | 0.25 × 0.23 × 0.22 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD diffractometer | 1935 independent reflections |
| Radiation source: fine-focus sealed tube | 1474 reflections with I > 2σ(I) |
| graphite | Rint = 0.036 |
| φ and ω scans | θmax = 25.5°, θmin = 2.7° |
| Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −10→11 |
| Tmin = 0.976, Tmax = 0.979 | k = −11→14 |
| 5880 measured reflections | l = −11→11 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.040 | H-atom parameters constrained |
| wR(F2) = 0.116 | w = 1/[σ2(Fo2) + (0.0422P)2 + 0.3813P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.09 | (Δ/σ)max < 0.001 |
| 1935 reflections | Δρmax = 0.18 e Å−3 |
| 147 parameters | Δρmin = −0.19 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.077 (5) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.3906 (2) | 0.14260 (14) | 0.6005 (2) | 0.0440 (5) | |
| C2 | 0.4887 (2) | 0.22747 (14) | 0.63956 (18) | 0.0409 (4) | |
| H2 | 0.5876 | 0.2139 | 0.6826 | 0.049* | |
| C3 | 0.43732 (19) | 0.33301 (14) | 0.61347 (18) | 0.0368 (4) | |
| H3 | 0.5019 | 0.3915 | 0.6400 | 0.044* | |
| C4 | 0.28916 (18) | 0.35297 (12) | 0.54763 (17) | 0.0327 (4) | |
| C5 | 0.1950 (2) | 0.26412 (14) | 0.50840 (18) | 0.0383 (4) | |
| H5 | 0.0962 | 0.2765 | 0.4636 | 0.046* | |
| C6 | 0.2447 (2) | 0.15804 (14) | 0.5344 (2) | 0.0451 (5) | |
| H6 | 0.1812 | 0.0989 | 0.5079 | 0.054* | |
| C7 | 0.22867 (19) | 0.46193 (13) | 0.50988 (18) | 0.0355 (4) | |
| H7 | 0.1338 | 0.4662 | 0.4497 | 0.043* | |
| C8 | 0.22355 (17) | 0.65015 (12) | 0.48809 (17) | 0.0317 (4) | |
| C9 | 0.22777 (18) | 0.74242 (13) | 0.57483 (17) | 0.0343 (4) | |
| H9 | 0.2750 | 0.7392 | 0.6739 | 0.041* | |
| C10 | 0.16262 (19) | 0.83889 (13) | 0.51566 (18) | 0.0373 (4) | |
| H10 | 0.1647 | 0.8998 | 0.5752 | 0.045* | |
| C11 | 0.09399 (18) | 0.84530 (13) | 0.36764 (18) | 0.0354 (4) | |
| C12 | 0.09253 (18) | 0.75496 (14) | 0.27921 (18) | 0.0363 (4) | |
| H12 | 0.0489 | 0.7595 | 0.1794 | 0.044* | |
| C13 | 0.15602 (19) | 0.65777 (13) | 0.33919 (18) | 0.0362 (4) | |
| H13 | 0.1536 | 0.5969 | 0.2794 | 0.043* | |
| N1 | 0.29403 (15) | 0.55196 (11) | 0.55190 (14) | 0.0344 (4) | |
| F1 | 0.44178 (15) | 0.03938 (9) | 0.62945 (16) | 0.0739 (4) | |
| O1 | 0.03080 (16) | 0.94277 (10) | 0.31471 (14) | 0.0520 (4) | |
| H1A | −0.0279 | 0.9327 | 0.2353 | 0.078* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0595 (12) | 0.0274 (9) | 0.0470 (10) | 0.0055 (8) | 0.0167 (9) | 0.0046 (7) |
| C2 | 0.0407 (10) | 0.0414 (10) | 0.0392 (9) | 0.0064 (8) | 0.0077 (8) | 0.0005 (7) |
| C3 | 0.0408 (10) | 0.0324 (9) | 0.0371 (9) | −0.0032 (7) | 0.0096 (7) | −0.0048 (7) |
| C4 | 0.0393 (9) | 0.0291 (9) | 0.0298 (8) | −0.0013 (7) | 0.0089 (7) | 0.0004 (6) |
| C5 | 0.0402 (10) | 0.0359 (10) | 0.0371 (9) | −0.0045 (7) | 0.0064 (7) | 0.0029 (7) |
| C6 | 0.0550 (12) | 0.0302 (10) | 0.0494 (10) | −0.0093 (8) | 0.0117 (9) | −0.0002 (8) |
| C7 | 0.0350 (9) | 0.0327 (9) | 0.0371 (9) | −0.0010 (7) | 0.0061 (7) | 0.0017 (7) |
| C8 | 0.0314 (9) | 0.0279 (9) | 0.0346 (8) | −0.0006 (6) | 0.0065 (7) | 0.0036 (6) |
| C9 | 0.0371 (9) | 0.0333 (9) | 0.0295 (8) | −0.0027 (7) | 0.0031 (7) | 0.0009 (7) |
| C10 | 0.0427 (10) | 0.0278 (9) | 0.0390 (9) | −0.0022 (7) | 0.0060 (7) | −0.0026 (7) |
| C11 | 0.0352 (9) | 0.0279 (9) | 0.0405 (9) | −0.0013 (7) | 0.0049 (7) | 0.0058 (7) |
| C12 | 0.0394 (10) | 0.0374 (10) | 0.0292 (8) | −0.0013 (7) | 0.0033 (7) | 0.0025 (7) |
| C13 | 0.0410 (10) | 0.0318 (9) | 0.0344 (9) | −0.0011 (7) | 0.0070 (7) | −0.0035 (7) |
| N1 | 0.0380 (8) | 0.0291 (8) | 0.0345 (7) | 0.0009 (6) | 0.0064 (6) | 0.0020 (6) |
| F1 | 0.0840 (10) | 0.0317 (7) | 0.1022 (10) | 0.0132 (6) | 0.0167 (8) | 0.0105 (6) |
| O1 | 0.0641 (9) | 0.0294 (7) | 0.0508 (8) | 0.0039 (6) | −0.0071 (6) | 0.0060 (5) |
Geometric parameters (Å, °)
| C1—F1 | 1.352 (2) | C8—C9 | 1.388 (2) |
| C1—C6 | 1.368 (3) | C8—C13 | 1.392 (2) |
| C1—C2 | 1.374 (3) | C8—N1 | 1.428 (2) |
| C2—C3 | 1.377 (2) | C9—C10 | 1.379 (2) |
| C2—H2 | 0.9300 | C9—H9 | 0.9300 |
| C3—C4 | 1.395 (2) | C10—C11 | 1.386 (2) |
| C3—H3 | 0.9300 | C10—H10 | 0.9300 |
| C4—C5 | 1.390 (2) | C11—O1 | 1.367 (2) |
| C4—C7 | 1.456 (2) | C11—C12 | 1.382 (2) |
| C5—C6 | 1.378 (2) | C12—C13 | 1.384 (2) |
| C5—H5 | 0.9300 | C12—H12 | 0.9300 |
| C6—H6 | 0.9300 | C13—H13 | 0.9300 |
| C7—N1 | 1.273 (2) | O1—H1A | 0.8200 |
| C7—H7 | 0.9300 | ||
| F1—C1—C6 | 118.99 (17) | C9—C8—C13 | 118.68 (14) |
| F1—C1—C2 | 117.95 (17) | C9—C8—N1 | 119.45 (14) |
| C6—C1—C2 | 123.06 (16) | C13—C8—N1 | 121.80 (14) |
| C1—C2—C3 | 118.47 (17) | C10—C9—C8 | 120.71 (15) |
| C1—C2—H2 | 120.8 | C10—C9—H9 | 119.6 |
| C3—C2—H2 | 120.8 | C8—C9—H9 | 119.6 |
| C2—C3—C4 | 120.59 (16) | C9—C10—C11 | 120.18 (15) |
| C2—C3—H3 | 119.7 | C9—C10—H10 | 119.9 |
| C4—C3—H3 | 119.7 | C11—C10—H10 | 119.9 |
| C5—C4—C3 | 118.60 (15) | O1—C11—C12 | 122.48 (15) |
| C5—C4—C7 | 117.74 (15) | O1—C11—C10 | 117.79 (15) |
| C3—C4—C7 | 123.56 (15) | C12—C11—C10 | 119.73 (15) |
| C6—C5—C4 | 121.46 (17) | C13—C12—C11 | 119.99 (15) |
| C6—C5—H5 | 119.3 | C13—C12—H12 | 120.0 |
| C4—C5—H5 | 119.3 | C11—C12—H12 | 120.0 |
| C1—C6—C5 | 117.80 (16) | C12—C13—C8 | 120.68 (15) |
| C1—C6—H6 | 121.1 | C12—C13—H13 | 119.7 |
| C5—C6—H6 | 121.1 | C8—C13—H13 | 119.7 |
| N1—C7—C4 | 125.84 (15) | C7—N1—C8 | 117.26 (14) |
| N1—C7—H7 | 117.1 | C11—O1—H1A | 109.5 |
| C4—C7—H7 | 117.1 | ||
| F1—C1—C2—C3 | −178.66 (16) | N1—C8—C9—C10 | 178.98 (15) |
| C6—C1—C2—C3 | 1.3 (3) | C8—C9—C10—C11 | −1.1 (3) |
| C1—C2—C3—C4 | −0.6 (3) | C9—C10—C11—O1 | 179.82 (16) |
| C2—C3—C4—C5 | −0.3 (2) | C9—C10—C11—C12 | −0.7 (3) |
| C2—C3—C4—C7 | −176.69 (15) | O1—C11—C12—C13 | −178.88 (16) |
| C3—C4—C5—C6 | 0.6 (3) | C10—C11—C12—C13 | 1.7 (3) |
| C7—C4—C5—C6 | 177.20 (16) | C11—C12—C13—C8 | −0.9 (3) |
| F1—C1—C6—C5 | 178.95 (16) | C9—C8—C13—C12 | −0.9 (3) |
| C2—C1—C6—C5 | −1.0 (3) | N1—C8—C13—C12 | −177.93 (16) |
| C4—C5—C6—C1 | 0.0 (3) | C4—C7—N1—C8 | 172.19 (15) |
| C5—C4—C7—N1 | 171.35 (17) | C9—C8—N1—C7 | 140.76 (16) |
| C3—C4—C7—N1 | −12.2 (3) | C13—C8—N1—C7 | −42.2 (2) |
| C13—C8—C9—C10 | 1.9 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1A···N1i | 0.82 | 2.09 | 2.885 (2) | 163 |
Symmetry codes: (i) x−1/2, −y+3/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5896).
References
- Alhadi, A. A., Ali, H. M., Puvaneswary, S., Robinson, W. T. & Ng, S. W. (2008). Acta Cryst. E64, o1584. [DOI] [PMC free article] [PubMed]
- Bruker (2004). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Fun, H.-K., Patil, P. S., Jebas, S. R., Sujith, K. V. & Kalluraya, B. (2008). Acta Cryst. E64, o1594–o1595. [DOI] [PMC free article] [PubMed]
- Nie, Y. (2008). Acta Cryst. E64, o471. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Sun, L.-X., Yu, Y.-D. & Wei, G.-Y. (2011). Acta Cryst. E67, o1564. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811019921/hb5896sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811019921/hb5896Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811019921/hb5896Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


