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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 11;67(Pt 7):o1632. doi: 10.1107/S1600536811021635

2,5-Bis[(3-hy­droxy­prop­yl)amino]-1,4-benzoquinone monohydrate

Jian Wang a,*, Weiwei Liu a, Tongwei Guan a, Fujun Yin a, Yuxi Sun b
PMCID: PMC3152041  PMID: 21837038

Abstract

The title compound, C12H18N2O4·H2O, was obtained as a product of the reaction of hydro­quinone with n-propanol amine. The compound crystallizes as a monohydrate, integrating water into its hydrogen-bonded network. Each diamino­quinone moiety forms two centrosymmetric 10-membered rings through C=O⋯H—N bonds. The resulting bands along [102] are inter­linked through hy­droxy groups and water mol­ecules into three-dimensional network. The chemically equivalent bond lengths in the diamino­quinone moiety exhibit a perceptible discrepancy [e.g. C=O bond lengths differ by 0.016 (2) Å], apparently as a result of asymmetric hydrogen bonding: one O atom serves as an acceptor of one hydrogen bond, whereas the other is an acceptor of two.

Related literature

For the synthesis of the title compound see: Jian et al. (2009). For related literature on aminoquinones, see: Der (2010), Nisha et al. (2010).graphic file with name e-67-o1632-scheme1.jpg

Experimental

Crystal data

  • C12H18N2O4·H2O

  • M r = 272.30

  • Triclinic, Inline graphic

  • a = 4.9272 (8) Å

  • b = 11.673 (2) Å

  • c = 11.933 (2) Å

  • α = 82.104 (2)°

  • β = 87.994 (2)°

  • γ = 80.849 (2)°

  • V = 671.13 (19) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 296 K

  • 0.25 × 0.18 × 0.11 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2008) T min = 0.974, T max = 0.989

  • 5966 measured reflections

  • 2895 independent reflections

  • 1963 reflections with I > 2σ(I)

  • R int = 0.025

Refinement

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.116

  • S = 1.03

  • 2895 reflections

  • 196 parameters

  • 7 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.20 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021635/ld2011sup1.cif

e-67-o1632-sup1.cif (18KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021635/ld2011Isup2.hkl

e-67-o1632-Isup2.hkl (142.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811021635/ld2011Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H5B⋯O4i 0.85 (1) 1.98 (1) 2.818 (2) 168 (2)
O5—H5A⋯O3ii 0.85 (1) 1.90 (1) 2.736 (2) 169 (2)
O3—H3⋯O2ii 0.84 (2) 1.90 (2) 2.7398 (19) 173 (3)
N1—H1⋯O2ii 0.89 (1) 2.20 (1) 2.9865 (18) 146 (2)
N2—H2⋯O1iii 0.89 (1) 2.17 (1) 2.9508 (17) 146 (2)
O4—H4⋯O5iv 0.85 (2) 1.88 (2) 2.727 (2) 173 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

We acknowledge the financial support of the foundation of Jiangsu Key Laboratory of Marine Biotechnology (2010HS07), the Jiangsu Marine Resources Development Research Institute (JSIMR10E02), the Major Program of the Natural Science Foundation of Jiangsu Education Committee (10 K J A170003), the Natural Science Foundation of Jiangsu Education Committee (08KJB150002), the Six Kinds of Professional Elite Foundation of Jiangsu Province (No. 07-A-024), the Science and Technology Critical Project Foundation of Lianyungang (CG0803–2), the Doctoral Scientific Research Project (KQ09006) and the partnership of Huaihai Institute of Technology.

supplementary crystallographic information

Comment

Aminoquinones are used as medicines and herbicides and have interesting redox switching properties. They are formed in the reactions of different amines with quinones or hydroquinone. For example, 1,4-benzoquinone reacts with primary amines to give 2,5-diamino-1,4-benzoquinones. Recently, by reacting hydroquinone with n-propanol amine, 2,5-di[(3-hydroxypropyl)amino]-1,4-benzoquinone has been synthesized. The product was characterized with IR, UV and mass spectrometry, as well as NMR. This and related compounds are of considerable interest since they exhibit potent antitumor and antimalarial activities. However, the single-crystal structure of 2,5-di[(3-hydroxypropyl)amino]-1,4-benzoquinone has not been reported.

Experimental

Methanol solution (10 ml) of n-propanol amine(2.3 mmol) was added to methanol solution (10 ml) of hydroquinone (0.05 g=0.46 mmol), and was stirred for 0.5 h at room temperature. Then the reaction was refluxed at 50°C for 4 h. A deep-red ropiness crude product was formed. The product was purified by recrystallization from methanol. Long red flat prisms were obtained from methanol solution after vaporizing at room temperature for two weeks.

Refinement

The structure of the compound was solved with direct methods and then refined anisotropically using full-matrix least-squares procedure. H atoms bonded to N and O atoms were located in a difference Fourier map and refined isotropically with distance restraints O—H = 0.850 and N—H = 0.890 Å. Other H atoms were positioned geometrically and refined using a riding model with C—H = 0.930–0.970 Å and with Uiso(H) = 1.2 (1.5 for methyl groups) times Ueq(C).

Figures

Fig. 1.

Fig. 1.

The structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

Crystal packing of the title compound.

Crystal data

C12H18N2O4·H2O Z = 2
Mr = 272.30 F(000) = 292
Triclinic, P1 Dx = 1.347 Mg m3
Hall symbol: -P 1 Melting point = 437.1–438.3 K
a = 4.9272 (8) Å Mo Kα radiation, λ = 0.71073 Å
b = 11.673 (2) Å Cell parameters from 1436 reflections
c = 11.933 (2) Å θ = 2.6–26.1°
α = 82.104 (2)° µ = 0.11 mm1
β = 87.994 (2)° T = 296 K
γ = 80.849 (2)° Strip, red
V = 671.13 (19) Å3 0.25 × 0.18 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer 2895 independent reflections
Radiation source: fine-focus sealed tube 1963 reflections with I > 2σ(I)
graphite Rint = 0.025
phi and ω scans θmax = 27.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) h = −6→6
Tmin = 0.974, Tmax = 0.989 k = −14→14
5966 measured reflections l = −14→15

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116 H atoms treated by a mixture of independent and constrained refinement
S = 1.03 w = 1/[σ2(Fo2) + (0.0454P)2 + 0.0971P] where P = (Fo2 + 2Fc2)/3
2895 reflections (Δ/σ)max < 0.001
196 parameters Δρmax = 0.20 e Å3
7 restraints Δρmin = −0.20 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.6153 (3) −0.11927 (12) 0.36773 (12) 0.0390 (4)
N2 1.3092 (3) 0.13162 (11) 0.10709 (11) 0.0351 (3)
O1 1.2722 (3) −0.08231 (10) 0.07011 (10) 0.0453 (3)
O2 0.6703 (3) 0.09049 (10) 0.41065 (10) 0.0552 (4)
O3 0.5303 (4) −0.32465 (13) 0.60246 (12) 0.0736 (5)
O4 1.0113 (3) 0.41209 (12) −0.14943 (12) 0.0565 (4)
O5 0.5089 (3) 0.49169 (15) 0.21551 (15) 0.0768 (5)
C1 1.1245 (3) −0.04600 (13) 0.14826 (13) 0.0314 (4)
C2 0.9446 (3) −0.11051 (13) 0.21472 (13) 0.0340 (4)
H2A 0.9286 −0.1851 0.1994 0.041*
C3 0.7922 (3) −0.06574 (13) 0.30165 (13) 0.0317 (4)
C4 0.8147 (3) 0.05513 (13) 0.32951 (13) 0.0351 (4)
C5 0.9895 (3) 0.12030 (13) 0.26347 (13) 0.0349 (4)
H5 1.0042 0.1949 0.2793 0.042*
C6 1.1415 (3) 0.07683 (12) 0.17496 (13) 0.0293 (3)
C7 0.5507 (4) −0.23474 (14) 0.35927 (14) 0.0396 (4)
H7A 0.5450 −0.2441 0.2799 0.048*
H7B 0.3688 −0.2399 0.3915 0.048*
C8 0.7530 (4) −0.33485 (14) 0.41825 (14) 0.0435 (4)
H8A 0.6915 −0.4084 0.4109 0.052*
H8B 0.9311 −0.3353 0.3809 0.052*
C9 0.7835 (5) −0.32661 (18) 0.54126 (16) 0.0589 (6)
H9A 0.9135 −0.3930 0.5742 0.071*
H9B 0.8582 −0.2560 0.5486 0.071*
C10 1.3668 (4) 0.24973 (13) 0.10990 (14) 0.0380 (4)
H10A 1.5559 0.2458 0.1321 0.046*
H10B 1.2486 0.2859 0.1662 0.046*
C11 1.3213 (3) 0.32460 (13) −0.00383 (13) 0.0339 (4)
H11A 1.3914 0.3974 −0.0017 0.041*
H11B 1.4254 0.2842 −0.0612 0.041*
C12 1.0238 (3) 0.35224 (14) −0.03697 (14) 0.0382 (4)
H12A 0.9458 0.2806 −0.0334 0.046*
H12B 0.9203 0.4011 0.0142 0.046*
H5A 0.516 (5) 0.4429 (17) 0.2754 (14) 0.092 (8)*
H5B 0.662 (3) 0.516 (2) 0.205 (2) 0.099 (9)*
H2 1.405 (4) 0.0890 (14) 0.0584 (13) 0.059 (6)*
H1 0.535 (4) −0.0797 (15) 0.4219 (13) 0.063 (6)*
H4 0.844 (4) 0.437 (2) −0.167 (2) 0.087 (8)*
H3 0.456 (5) −0.2541 (16) 0.601 (2) 0.097 (9)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0467 (9) 0.0316 (7) 0.0382 (8) −0.0087 (6) 0.0157 (7) −0.0043 (6)
N2 0.0405 (8) 0.0283 (7) 0.0361 (8) −0.0068 (6) 0.0112 (6) −0.0038 (6)
O1 0.0546 (8) 0.0366 (6) 0.0459 (7) −0.0097 (5) 0.0247 (6) −0.0129 (5)
O2 0.0752 (9) 0.0391 (7) 0.0519 (8) −0.0121 (6) 0.0359 (7) −0.0138 (6)
O3 0.1126 (14) 0.0458 (9) 0.0477 (8) 0.0110 (8) 0.0317 (9) 0.0102 (7)
O4 0.0473 (9) 0.0658 (9) 0.0505 (8) −0.0093 (7) −0.0054 (7) 0.0146 (7)
O5 0.0648 (11) 0.0847 (12) 0.0740 (11) −0.0315 (9) −0.0232 (9) 0.0418 (9)
C1 0.0345 (9) 0.0279 (8) 0.0299 (8) −0.0004 (6) 0.0051 (7) −0.0045 (6)
C2 0.0404 (9) 0.0262 (8) 0.0353 (9) −0.0063 (7) 0.0074 (7) −0.0048 (7)
C3 0.0336 (9) 0.0291 (8) 0.0303 (8) −0.0034 (6) 0.0051 (7) 0.0008 (6)
C4 0.0404 (9) 0.0306 (8) 0.0319 (8) −0.0007 (7) 0.0103 (7) −0.0039 (7)
C5 0.0425 (10) 0.0266 (8) 0.0357 (9) −0.0067 (7) 0.0098 (7) −0.0057 (7)
C6 0.0295 (8) 0.0271 (8) 0.0290 (8) −0.0021 (6) 0.0018 (6) 0.0013 (6)
C7 0.0440 (10) 0.0397 (9) 0.0362 (9) −0.0149 (7) 0.0051 (8) −0.0001 (7)
C8 0.0511 (11) 0.0349 (9) 0.0438 (10) −0.0062 (8) 0.0093 (9) −0.0057 (8)
C9 0.0730 (15) 0.0495 (12) 0.0475 (12) 0.0083 (10) −0.0057 (11) −0.0018 (9)
C10 0.0418 (10) 0.0338 (9) 0.0391 (9) −0.0123 (7) 0.0037 (8) −0.0014 (7)
C11 0.0351 (9) 0.0292 (8) 0.0371 (9) −0.0079 (7) 0.0068 (7) −0.0026 (7)
C12 0.0388 (10) 0.0341 (9) 0.0415 (10) −0.0073 (7) 0.0050 (8) −0.0043 (7)

Geometric parameters (Å, °)

N1—C3 1.3273 (19) C4—C5 1.392 (2)
N1—C7 1.451 (2) C5—C6 1.380 (2)
N1—H1 0.891 (9) C5—H5 0.9300
N2—C6 1.3140 (19) C7—C8 1.519 (2)
N2—C10 1.456 (2) C7—H7A 0.9700
N2—H2 0.891 (9) C7—H7B 0.9700
O1—C1 1.2419 (17) C8—C9 1.499 (3)
O2—C4 1.2580 (18) C8—H8A 0.9700
O3—C9 1.422 (2) C8—H8B 0.9700
O3—H3 0.844 (16) C9—H9A 0.9700
O4—C12 1.424 (2) C9—H9B 0.9700
O4—H4 0.850 (16) C10—C11 1.513 (2)
O5—H5A 0.849 (9) C10—H10A 0.9700
O5—H5B 0.849 (9) C10—H10B 0.9700
C1—C2 1.407 (2) C11—C12 1.504 (2)
C1—C6 1.526 (2) C11—H11A 0.9700
C2—C3 1.372 (2) C11—H11B 0.9700
C2—H2A 0.9300 C12—H12A 0.9700
C3—C4 1.515 (2) C12—H12B 0.9700
C3—N1—C7 125.40 (14) H7A—C7—H7B 107.6
C3—N1—H1 115.3 (13) C9—C8—C7 112.93 (15)
C7—N1—H1 119.3 (13) C9—C8—H8A 109.0
C6—N2—C10 126.63 (14) C7—C8—H8A 109.0
C6—N2—H2 115.3 (12) C9—C8—H8B 109.0
C10—N2—H2 117.9 (12) C7—C8—H8B 109.0
C9—O3—H3 108.2 (18) H8A—C8—H8B 107.8
C12—O4—H4 109.4 (17) O3—C9—C8 112.68 (18)
H5A—O5—H5B 109.4 (18) O3—C9—H9A 109.1
O1—C1—C2 124.65 (14) C8—C9—H9A 109.1
O1—C1—C6 117.67 (13) O3—C9—H9B 109.1
C2—C1—C6 117.68 (13) C8—C9—H9B 109.1
C3—C2—C1 121.45 (14) H9A—C9—H9B 107.8
C3—C2—H2A 119.3 N2—C10—C11 111.84 (13)
C1—C2—H2A 119.3 N2—C10—H10A 109.2
N1—C3—C2 125.71 (15) C11—C10—H10A 109.2
N1—C3—C4 113.62 (13) N2—C10—H10B 109.2
C2—C3—C4 120.67 (13) C11—C10—H10B 109.2
O2—C4—C5 124.28 (15) H10A—C10—H10B 107.9
O2—C4—C3 117.34 (14) C12—C11—C10 113.21 (13)
C5—C4—C3 118.38 (13) C12—C11—H11A 108.9
C6—C5—C4 121.53 (14) C10—C11—H11A 108.9
C6—C5—H5 119.2 C12—C11—H11B 108.9
C4—C5—H5 119.2 C10—C11—H11B 108.9
N2—C6—C5 126.20 (14) H11A—C11—H11B 107.7
N2—C6—C1 113.53 (13) O4—C12—C11 107.74 (13)
C5—C6—C1 120.27 (13) O4—C12—H12A 110.2
N1—C7—C8 114.31 (14) C11—C12—H12A 110.2
N1—C7—H7A 108.7 O4—C12—H12B 110.2
C8—C7—H7A 108.7 C11—C12—H12B 110.2
N1—C7—H7B 108.7 H12A—C12—H12B 108.5
C8—C7—H7B 108.7
O1—C1—C2—C3 178.39 (16) C10—N2—C6—C1 179.18 (14)
C6—C1—C2—C3 −0.9 (2) C4—C5—C6—N2 179.17 (16)
C7—N1—C3—C2 −0.3 (3) C4—C5—C6—C1 −0.9 (2)
C7—N1—C3—C4 179.25 (15) O1—C1—C6—N2 2.2 (2)
C1—C2—C3—N1 179.10 (16) C2—C1—C6—N2 −178.43 (15)
C1—C2—C3—C4 −0.4 (2) O1—C1—C6—C5 −177.71 (15)
N1—C3—C4—O2 0.8 (2) C2—C1—C6—C5 1.7 (2)
C2—C3—C4—O2 −179.63 (16) C3—N1—C7—C8 83.0 (2)
N1—C3—C4—C5 −178.40 (15) N1—C7—C8—C9 56.7 (2)
C2—C3—C4—C5 1.2 (2) C7—C8—C9—O3 58.3 (2)
O2—C4—C5—C6 −179.57 (16) C6—N2—C10—C11 −126.19 (17)
C3—C4—C5—C6 −0.5 (2) N2—C10—C11—C12 68.29 (17)
C10—N2—C6—C5 −0.9 (3) C10—C11—C12—O4 −174.07 (13)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O5—H5B···O4i 0.85 (1) 1.98 (1) 2.818 (2) 168 (2)
O5—H5A···O3ii 0.85 (1) 1.90 (1) 2.736 (2) 169 (2)
O3—H3···O2ii 0.84 (2) 1.90 (2) 2.7398 (19) 173 (3)
N1—H1···O2ii 0.89 (1) 2.20 (1) 2.9865 (18) 146.(2)
N2—H2···O1iii 0.89 (1) 2.17 (1) 2.9508 (17) 146.(2)
O4—H4···O5iv 0.85 (2) 1.88 (2) 2.727 (2) 173 (2)

Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x+1, −y, −z+1; (iii) −x+3, −y, −z; (iv) −x+1, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LD2011).

References

  1. Bruker (2008). APEX2 and SAINT. Bruker AXS, Madison, Wisconsin, USA.
  2. Der, P. C. (2010). Scholars Research Library. 2, 63–73
  3. Jian, W., Wei-wei, L., Wei-xing, M., Tong-wei, G., Xing-you, X., Lu-de, L. & Xu-ji, Y. (2009). J. Huaihai Institute of Technology (Natural Science Edition). 18, 34–37
  4. Nisha, M., Twinkle, K., Lakshmy, S. & Kalyanasundaram, M. (2010). Drug Dev. Res. 71, 188–196.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021635/ld2011sup1.cif

e-67-o1632-sup1.cif (18KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021635/ld2011Isup2.hkl

e-67-o1632-Isup2.hkl (142.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811021635/ld2011Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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