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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 25;67(Pt 7):o1791. doi: 10.1107/S1600536811024226

2-(3-Hy­droxy­benzyl­amino)­acetic acid

Li-Hua Zhi a, Wei-Na Wu a,*
PMCID: PMC3152044  PMID: 21837164

Abstract

There are two independent 2-(3-hy­droxy­benzyl­amino)­acetic acid mol­ecules, C9H11NO3, in the asymmetric unit of the title compound. The dihedral angle between the benzene rings of the two independent mol­ecules is 58.12 (4)°. The crystal packing is stablized by inter­molecular O—H⋯O and N—H⋯O hydrogen bonds.

Related literature

For the anti-tumor and artificial nuclease activity of copper complexes with substituted amino acid ligands, see: Jia et al. (2010).graphic file with name e-67-o1791-scheme1.jpg

Experimental

Crystal data

  • C9H11NO3

  • M r = 181.19

  • Monoclinic, Inline graphic

  • a = 11.9779 (3) Å

  • b = 8.0267 (2) Å

  • c = 9.3835 (2) Å

  • β = 101.391 (2)°

  • V = 884.39 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 296 K

  • 0.23 × 0.16 × 0.12 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2007) T min = 0.980, T max = 0.988

  • 7436 measured reflections

  • 1999 independent reflections

  • 1815 reflections with I > 2σ(I)

  • R int = 0.022

Refinement

  • R[F 2 > 2σ(F 2)] = 0.043

  • wR(F 2) = 0.134

  • S = 1.07

  • 1999 reflections

  • 235 parameters

  • 2 restraints

  • H-atom parameters constrained

  • Δρmax = 0.40 e Å−3

  • Δρmin = −0.32 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024226/vm2101sup1.cif

e-67-o1791-sup1.cif (19.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024226/vm2101Isup2.hkl

e-67-o1791-Isup2.hkl (98.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811024226/vm2101Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯O4 0.86 2.25 2.891 (3) 132
O3—H3C⋯O2i 0.82 1.84 2.639 (4) 166
N2—H2C⋯O2ii 0.86 2.28 2.910 (3) 130
O6—H6A⋯O4iii 0.82 1.85 2.646 (4) 165

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors are grateful for financial support from the Doctoral Foundation of Henan Polytechnic University (B2009–65 648359 and B2009–70 648364).

supplementary crystallographic information

Comment

In recent years, substituted amino acid complexes have received extensive attention because of primarily their biological and pharmaceutical activities (Lei Jia et al., 2010). As part of our studies of substituted amino acids, the title compound was synthesized and characterized by X-ray diffraction.

The asymmetric of the title compound, 2C9H11NO3, contains two independent 2-(3-hydroxybenzylamino)acetic acid molecules (Fig. 1). Each benzene ring is essentially planar [mean deviations of 0.0066 Å for ring C4—C9 and 0.0030 Å for ring C13—C18]. The torsion angles C12—N2 –C11—C10 and C2—N1—C3—C4 are -163.2 (2)° and -55.5 (3)°, respectively. The dihedral angle between the benzene rings in two independent amino acid molecules is 58.12 (4)°. In the crystal structure, intermolecular O—H···O and N—H···O hydrogen bonds are helpful to stabilize the packing (Table 1, Fig. 2).

Experimental

To a clear solution of glycine (0.75 g, 10 mmol) and NaOH (0.40 g, 10 mmol) in a solvent mixture of water (10 mL) and methanol (20 mL), was added 3-hydroxy benzaldehyde (1.22 g, 10 mmol) and the resulting yellow solution was stirred for 3 h. After cooling to 273 K, a slight excess of NaBH4 (0.46 g, 12 mmol) was added. The yellow color slowly discharged after 20–30 min and the pH value was maintained 5–6 by addition of acetic acid. Colorless blocks of the title compound were obtained by slow evaporation of the reaction mixture.

Refinement

We have merged Friedel-pair reflections before final refinement, as there is a light atom structure (heaviest element lighter than silicon, with Mo radiation). All H atoms were placed in calculated positions, with C—H = 0.93 and 0.97 Å, N—H = 0.86 Å and O—H = 0.82 Å, and were thereafter treated as riding, with Uiso(H) values of 1.5Ueq(O) for hydoxyl group and 1.2Ueq(C,N) for others.

Figures

Fig. 1.

Fig. 1.

The title compound with the displacement ellipsoids shown at the 50% probability level.

Fig. 2.

Fig. 2.

Part of the crystal packing for the title compound [hydrogen bonds shown as dashed lines, with symmetry codes: (i) x, -y + 1, z - 1/2; (ii) x, y, z - 1; (iii) x, -y, z - 1/2.].

Crystal data

C9H11NO3 F(000) = 384
Mr = 181.19 Dx = 1.361 Mg m3
Monoclinic, Pc Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2yc Cell parameters from 3325 reflections
a = 11.9779 (3) Å θ = 3.1–26.5°
b = 8.0267 (2) Å µ = 0.10 mm1
c = 9.3835 (2) Å T = 296 K
β = 101.391 (2)° Block, colorless
V = 884.39 (4) Å3 0.23 × 0.16 × 0.12 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 1999 independent reflections
Radiation source: fine-focus sealed tube 1815 reflections with I > 2σ(I)
graphite Rint = 0.022
φ and ω scans θmax = 27.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2007) h = −15→14
Tmin = 0.980, Tmax = 0.988 k = −10→10
7436 measured reflections l = −12→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0892P)2 + 0.1326P] where P = (Fo2 + 2Fc2)/3
1999 reflections (Δ/σ)max = 0.007
235 parameters Δρmax = 0.40 e Å3
2 restraints Δρmin = −0.32 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O2 0.55759 (19) 0.0934 (3) 0.6066 (2) 0.0384 (5)
N1 0.6095 (2) 0.2130 (3) 0.2543 (3) 0.0336 (5)
H1A 0.5405 0.2099 0.2063 0.040*
C1 0.5447 (3) 0.0976 (4) 0.4692 (3) 0.0359 (6)
C4 0.7774 (3) 0.3969 (3) 0.2604 (3) 0.0345 (6)
O3 0.7554 (3) 0.8513 (3) 0.2813 (4) 0.0615 (8)
H3C 0.6936 0.8514 0.2251 0.092*
C9 0.8794 (3) 0.3737 (4) 0.3539 (5) 0.0491 (9)
H9 0.9079 0.2665 0.3728 0.059*
O1 0.4643 (3) 0.0409 (5) 0.3829 (3) 0.0810 (12)
H1B 0.4864 0.0058 0.3112 0.121*
C5 0.7337 (3) 0.5573 (3) 0.2338 (3) 0.0354 (6)
H5 0.6644 0.5739 0.1705 0.042*
C3 0.7094 (3) 0.2534 (4) 0.1859 (3) 0.0396 (7)
H3A 0.6824 0.2806 0.0842 0.048*
H3B 0.7581 0.1561 0.1906 0.048*
C6 0.7942 (3) 0.6920 (4) 0.3025 (4) 0.0420 (7)
C2 0.6411 (3) 0.1792 (4) 0.4121 (3) 0.0353 (6)
H2A 0.6614 0.2830 0.4636 0.042*
H2B 0.7073 0.1069 0.4309 0.042*
C7 0.8982 (4) 0.6685 (5) 0.3941 (5) 0.0542 (9)
H7 0.9395 0.7595 0.4375 0.065*
C8 0.9407 (3) 0.5093 (5) 0.4211 (5) 0.0598 (11)
H8 1.0102 0.4926 0.4841 0.072*
O4 0.4311 (2) 0.4024 (3) 0.0722 (2) 0.0387 (5)
N2 0.3782 (2) 0.2918 (3) −0.3084 (3) 0.0320 (5)
H2C 0.4470 0.2960 −0.3224 0.038*
C10 0.4428 (3) 0.4038 (4) −0.0589 (3) 0.0353 (6)
O6 0.2384 (3) −0.3410 (3) −0.3402 (4) 0.0595 (8)
H6A 0.2981 −0.3414 −0.3704 0.089*
C13 0.2093 (3) 0.1109 (3) −0.3881 (3) 0.0356 (6)
O5 0.5208 (3) 0.4690 (5) −0.1059 (3) 0.0742 (10)
H5A 0.4970 0.5018 −0.1891 0.111*
C14 0.2554 (3) −0.0481 (4) −0.3873 (3) 0.0355 (6)
H14 0.3250 −0.0643 −0.4151 0.043*
C11 0.3485 (3) 0.3195 (4) −0.1654 (3) 0.0360 (6)
H11A 0.3313 0.2132 −0.1255 0.043*
H11B 0.2804 0.3878 −0.1777 0.043*
C18 0.1069 (3) 0.1349 (4) −0.3470 (5) 0.0503 (8)
H18 0.0764 0.2415 −0.3476 0.060*
C12 0.2773 (3) 0.2555 (4) −0.4279 (3) 0.0400 (7)
H12A 0.3035 0.2299 −0.5169 0.048*
H12B 0.2290 0.3534 −0.4454 0.048*
C15 0.1966 (3) −0.1827 (4) −0.3447 (4) 0.0392 (7)
C16 0.0943 (3) −0.1573 (5) −0.3026 (5) 0.0509 (9)
H16 0.0558 −0.2473 −0.2726 0.061*
C17 0.0483 (3) −0.0004 (5) −0.3043 (6) 0.0575 (10)
H17 −0.0215 0.0155 −0.2772 0.069*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O2 0.0484 (12) 0.0335 (11) 0.0343 (11) −0.0017 (9) 0.0108 (9) 0.0037 (8)
N1 0.0403 (13) 0.0270 (11) 0.0340 (12) −0.0019 (10) 0.0086 (10) 0.0040 (10)
C1 0.0409 (15) 0.0337 (14) 0.0340 (15) −0.0043 (11) 0.0098 (12) 0.0009 (11)
C4 0.0388 (14) 0.0299 (13) 0.0394 (14) −0.0002 (11) 0.0191 (12) 0.0034 (11)
O3 0.0655 (16) 0.0237 (10) 0.083 (2) 0.0011 (11) −0.0151 (14) −0.0043 (11)
C9 0.0442 (18) 0.0337 (15) 0.071 (2) 0.0074 (13) 0.0154 (17) 0.0101 (15)
O1 0.0679 (18) 0.133 (3) 0.0427 (14) −0.054 (2) 0.0118 (13) −0.0031 (17)
C5 0.0395 (15) 0.0279 (14) 0.0384 (15) 0.0006 (11) 0.0070 (12) 0.0048 (12)
C3 0.0541 (18) 0.0300 (14) 0.0400 (17) −0.0011 (12) 0.0220 (14) −0.0007 (11)
C6 0.0466 (17) 0.0289 (14) 0.0492 (18) −0.0003 (12) 0.0064 (14) 0.0031 (13)
C2 0.0382 (14) 0.0379 (15) 0.0320 (13) −0.0036 (12) 0.0120 (11) −0.0017 (11)
C7 0.055 (2) 0.0395 (17) 0.063 (2) −0.0074 (15) −0.0017 (17) 0.0021 (16)
C8 0.0396 (17) 0.051 (2) 0.081 (3) 0.0002 (15) −0.0062 (17) 0.0135 (19)
O4 0.0513 (13) 0.0331 (11) 0.0325 (10) −0.0013 (9) 0.0099 (9) −0.0041 (8)
N2 0.0355 (12) 0.0259 (10) 0.0353 (12) −0.0016 (9) 0.0092 (10) −0.0023 (9)
C10 0.0418 (15) 0.0323 (13) 0.0319 (14) −0.0026 (11) 0.0077 (12) −0.0033 (11)
O6 0.0686 (17) 0.0265 (10) 0.093 (2) 0.0015 (11) 0.0384 (16) 0.0071 (12)
C13 0.0411 (15) 0.0299 (14) 0.0325 (14) −0.0031 (11) −0.0009 (11) −0.0027 (11)
O5 0.0715 (18) 0.109 (3) 0.0444 (15) −0.0508 (19) 0.0164 (13) −0.0151 (16)
C14 0.0383 (14) 0.0318 (14) 0.0376 (14) 0.0005 (11) 0.0106 (12) −0.0050 (12)
C11 0.0416 (15) 0.0364 (14) 0.0301 (13) −0.0045 (12) 0.0075 (11) −0.0013 (11)
C18 0.0451 (18) 0.0396 (17) 0.065 (2) 0.0081 (15) 0.0079 (16) −0.0067 (16)
C12 0.0567 (19) 0.0284 (13) 0.0324 (15) −0.0041 (13) 0.0028 (14) 0.0005 (11)
C15 0.0428 (16) 0.0300 (14) 0.0451 (17) −0.0035 (12) 0.0095 (13) −0.0038 (12)
C16 0.053 (2) 0.0401 (17) 0.063 (2) −0.0113 (15) 0.0201 (17) −0.0053 (16)
C17 0.0388 (17) 0.052 (2) 0.085 (3) −0.0011 (15) 0.0225 (17) −0.0100 (19)

Geometric parameters (Å, °)

O2—C1 1.268 (4) O4—C10 1.266 (4)
N1—C2 1.479 (4) N2—C11 1.472 (4)
N1—C3 1.501 (4) N2—C12 1.507 (4)
N1—H1A 0.8600 N2—H2C 0.8600
C1—O1 1.217 (4) C10—O5 1.226 (4)
C1—C2 1.514 (4) C10—C11 1.512 (4)
C4—C9 1.369 (5) O6—C15 1.362 (4)
C4—C5 1.394 (4) O6—H6A 0.8200
C4—C3 1.501 (4) C13—C18 1.370 (5)
O3—C6 1.362 (4) C13—C14 1.390 (4)
O3—H3C 0.8200 C13—C12 1.507 (4)
C9—C8 1.392 (6) O5—H5A 0.8200
C9—H9 0.9300 C14—C15 1.391 (4)
O1—H1B 0.8200 C14—H14 0.9300
C5—C6 1.387 (4) C11—H11A 0.9700
C5—H5 0.9300 C11—H11B 0.9700
C3—H3A 0.9700 C18—C17 1.394 (6)
C3—H3B 0.9700 C18—H18 0.9300
C6—C7 1.380 (5) C12—H12A 0.9700
C2—H2A 0.9700 C12—H12B 0.9700
C2—H2B 0.9700 C15—C16 1.376 (5)
C7—C8 1.381 (6) C16—C17 1.373 (6)
C7—H7 0.9300 C16—H16 0.9300
C8—H8 0.9300 C17—H17 0.9300
C2—N1—C3 113.6 (2) C11—N2—C12 113.9 (2)
C2—N1—H1A 123.2 C11—N2—H2C 123.1
C3—N1—H1A 123.2 C12—N2—H2C 123.1
O1—C1—O2 126.0 (3) O5—C10—O4 126.3 (3)
O1—C1—C2 119.0 (3) O5—C10—C11 118.5 (3)
O2—C1—C2 115.0 (3) O4—C10—C11 115.2 (3)
C9—C4—C5 119.8 (3) C15—O6—H6A 109.5
C9—C4—C3 121.8 (3) C18—C13—C14 120.3 (3)
C5—C4—C3 118.4 (3) C18—C13—C12 121.3 (3)
C6—O3—H3C 109.5 C14—C13—C12 118.4 (3)
C4—C9—C8 120.6 (3) C10—O5—H5A 109.5
C4—C9—H9 119.7 C15—C14—C13 119.4 (3)
C8—C9—H9 119.7 C15—C14—H14 120.3
C1—O1—H1B 109.5 C13—C14—H14 120.3
C6—C5—C4 119.6 (3) N2—C11—C10 112.7 (2)
C6—C5—H5 120.2 N2—C11—H11A 109.1
C4—C5—H5 120.2 C10—C11—H11A 109.1
N1—C3—C4 111.8 (2) N2—C11—H11B 109.1
N1—C3—H3A 109.3 C10—C11—H11B 109.1
C4—C3—H3A 109.3 H11A—C11—H11B 107.8
N1—C3—H3B 109.3 C13—C18—C17 120.0 (3)
C4—C3—H3B 109.3 C13—C18—H18 120.0
H3A—C3—H3B 107.9 C17—C18—H18 120.0
O3—C6—C7 117.3 (3) N2—C12—C13 111.0 (2)
O3—C6—C5 122.2 (3) N2—C12—H12A 109.4
C7—C6—C5 120.5 (3) C13—C12—H12A 109.4
N1—C2—C1 111.8 (2) N2—C12—H12B 109.4
N1—C2—H2A 109.3 C13—C12—H12B 109.4
C1—C2—H2A 109.3 H12A—C12—H12B 108.0
N1—C2—H2B 109.3 O6—C15—C16 118.2 (3)
C1—C2—H2B 109.3 O6—C15—C14 122.0 (3)
H2A—C2—H2B 107.9 C16—C15—C14 119.8 (3)
C8—C7—C6 119.7 (3) C17—C16—C15 120.7 (3)
C8—C7—H7 120.1 C17—C16—H16 119.6
C6—C7—H7 120.1 C15—C16—H16 119.6
C7—C8—C9 119.8 (3) C16—C17—C18 119.7 (3)
C7—C8—H8 120.1 C16—C17—H17 120.2
C9—C8—H8 120.1 C18—C17—H17 120.2
C5—C4—C9—C8 −1.0 (5) C18—C13—C14—C15 0.1 (5)
C3—C4—C9—C8 179.8 (4) C12—C13—C14—C15 177.2 (3)
C9—C4—C5—C6 0.1 (5) C12—N2—C11—C10 −163.2 (2)
C3—C4—C5—C6 179.3 (3) O5—C10—C11—N2 14.3 (5)
C2—N1—C3—C4 −55.5 (3) O4—C10—C11—N2 −167.2 (3)
C9—C4—C3—N1 103.7 (4) C14—C13—C18—C17 −0.1 (5)
C5—C4—C3—N1 −75.5 (3) C12—C13—C18—C17 −177.1 (4)
C4—C5—C6—O3 −179.7 (3) C11—N2—C12—C13 −54.6 (3)
C4—C5—C6—C7 1.4 (5) C18—C13—C12—N2 105.2 (3)
C3—N1—C2—C1 −165.6 (2) C14—C13—C12—N2 −71.9 (4)
O1—C1—C2—N1 13.6 (5) C13—C14—C15—O6 −179.2 (3)
O2—C1—C2—N1 −167.4 (3) C13—C14—C15—C16 −0.6 (5)
O3—C6—C7—C8 179.0 (4) O6—C15—C16—C17 179.7 (4)
C5—C6—C7—C8 −2.0 (6) C14—C15—C16—C17 1.1 (6)
C6—C7—C8—C9 1.1 (7) C15—C16—C17—C18 −1.0 (6)
C4—C9—C8—C7 0.4 (7) C13—C18—C17—C16 0.5 (6)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1A···O4 0.86 2.25 2.891 (3) 132
O3—H3C···O2i 0.82 1.84 2.639 (4) 166
N2—H2C···O2ii 0.86 2.28 2.910 (3) 130
O6—H6A···O4iii 0.82 1.85 2.646 (4) 165

Symmetry codes: (i) x, −y+1, z−1/2; (ii) x, y, z−1; (iii) x, −y, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: VM2101).

References

  1. Bruker (2007). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA .
  2. Jia, L., Jiang, P., Xu, J., Hao, Z.-Y., Xu, X.-M., Chen, L.-H., Wu, J.-C., Tang, N., Wang, Q. & Vittal, J. J. (2010). Inorg. Chim. Acta, 363, 855–865.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024226/vm2101sup1.cif

e-67-o1791-sup1.cif (19.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024226/vm2101Isup2.hkl

e-67-o1791-Isup2.hkl (98.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811024226/vm2101Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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