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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 25;67(Pt 7):m981. doi: 10.1107/S1600536811023804

Poly[[diaqua-μ3-citrato-praseodymium(III)] monohydrate]

Li-Jun Han a, Yuan-Fu Deng a, Seik Weng Ng b,*
PMCID: PMC3152053  PMID: 21836955

Abstract

In the coordination polymer, {[Pr(C6H5O7)(H2O)2]·H2O}n, seven of the nine coordination sites of the monocapped square-anti­prismatic geometry are occupied by three O atoms of the same citrate trianion (an O atom of the hy­droxy unit and the formally single-bond O atoms from two carboxyl units). Two other coordination sites are occupied by the O atoms of a chelating carboxyl unit of another citrate; one of these atoms is additionally involved in bridging. The seventh coordination site is occupied by the O atom of the formally double-bond O atom of a neighboring citrate. The remaining two coordination sites are occupied by water mol­ecules. The citrate functions in a μ3-bridging mode, connecting the metal atoms into a ribbon structure parallel to [010]. The structure is consolidated into a three-dimensional network by O—H⋯O hydrogen bonds.

Related literature

For isotypic [Eu(C6H5O7)(H2O)2]·H2O, see: Tang et al. (2011). graphic file with name e-67-0m981-scheme1.jpg

Experimental

Crystal data

  • [Pr(C6H5O7)(H2O)2]·H2O

  • M r = 384.06

  • Monoclinic, Inline graphic

  • a = 6.2645 (3) Å

  • b = 9.7356 (7) Å

  • c = 17.0425 (10) Å

  • β = 91.0672 (18)°

  • V = 1039.22 (11) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 4.74 mm−1

  • T = 293 K

  • 0.30 × 0.15 × 0.10 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.331, T max = 0.649

  • 9596 measured reflections

  • 2366 independent reflections

  • 2182 reflections with I > 2σ(I)

  • R int = 0.038

Refinement

  • R[F 2 > 2σ(F 2)] = 0.026

  • wR(F 2) = 0.050

  • S = 1.18

  • 2366 reflections

  • 175 parameters

  • 10 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.76 e Å−3

  • Δρmin = −0.81 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811023804/si2362sup1.cif

e-67-0m981-sup1.cif (18.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023804/si2362Isup2.hkl

e-67-0m981-Isup2.hkl (116.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O7—H7⋯O2i 0.83 (1) 1.72 (1) 2.536 (3) 167 (4)
O1w—H11⋯O2ii 0.84 (1) 1.84 (1) 2.666 (3) 169 (4)
O1w—H12⋯O3iii 0.84 (1) 1.89 (2) 2.692 (3) 159 (3)
O2w—H21⋯O1wiv 0.84 (1) 2.09 (2) 2.854 (4) 151 (4)
O2w—H22⋯O3w 0.84 (1) 1.89 (1) 2.718 (4) 168 (4)
O3w—H31⋯O6v 0.84 (1) 2.05 (2) 2.856 (4) 160 (6)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

We thank South China University of Technology and the University of Malaya for supporting this study.

supplementary crystallographic information

Comment

A recent report describes the synthesis of Eu(H2O)2(C6H5O7).H2O, a citrate(3-) based coordination polymer that exhibits useful luminescence; the ribbon motif propagates along the a-axis and adjacent chains are linked by O–H···O hydrogen bonds into a three-dimensional network. The presence of manganese dichloride is crucial to the synthesis (Tang et al., 2011). The present Pr analog (Scheme I) is isostructural, the two compounds crystallizing with matching cell dimensions. In the coordination polymer, Pr(H2O)2(C6H5O7).H2O (Fig. 1), seven of the nine coordination sites a mono-capped square-antiprismatic geometry (Fig. 2) are occupied by three O atoms of the same citrate trianion (an O atom of the hydroxy unit and the formally single-bond O atoms from two carboxyl units). Two other coordination sites are occupied by the O atoms of a chelating carboxyl unit of another citrate; one of these atoms is additionally involved in bridging. The seventh coordination site is occupied by the O atom of the formally double-bond O atom of a neighboring citrate. The remaining two coordination sites of the are occupied by water molecules. The citrate functions in a µ3– bridging mode to connect the metal atoms into a ribbon structure. The structure is consolidated into a three-dimensional network by O–H···O hydrogen bonds (Table 1).

Experimental

Praseodymium oxide, Pr6O11 (0.341 g), was suspended in water (20 ml) and to the suspension was added manganese dichloride tetrahydrate (0.395 g, 2.0 mmol) and citric acid monohydrate (0.841 g, 4.0 mmol). The mixture was placed in a 25 ml, teflon-lined, stainless-steel Parr bomb. The bomb was heated at 393 K for 72 h. It was cooled to room temperature at 30 K an hour. Green crystals were isolated in 75% yield based on Pr6O11.

Refinement

Carbon-bound H atoms treated as riding (C–H 0.97 Å) and their temperature factors were tied by a factor of 1.2 times. The hydroxy and water H atoms were located in a difference Fourier map, and were refined with distance restraints of O–H 0.84±0.01 Å and H···H 1.37±0.01 Å. Their temperature factors were tied by a factor of 1.5 times. The (5 6 3), (-6 6 1), (1 9 2), (4 10 2) and (6 7 3) reflections were omitted owing to bad disagreement.

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot (Barbour, 2001) of a portion of polymeric Pr(H2O)2(C6H5O7).H2O with the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Nine-coordinate geometry of PrIII.

Crystal data

[Pr(C6H5O7)(H2O)2]·H2O F(000) = 744
Mr = 384.06 Dx = 2.455 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 8369 reflections
a = 6.2645 (3) Å θ = 3.2–27.4°
b = 9.7356 (7) Å µ = 4.74 mm1
c = 17.0425 (10) Å T = 293 K
β = 91.0672 (18)° Prism, light green
V = 1039.22 (11) Å3 0.30 × 0.15 × 0.10 mm
Z = 4

Data collection

Rigaku R-AXIS RAPID diffractometer 2366 independent reflections
Radiation source: fine-focus sealed tube 2182 reflections with I > 2σ(I)
graphite Rint = 0.038
Detector resolution: 10.000 pixels mm-1 θmax = 27.4°, θmin = 3.2°
ω scans h = −8→8
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −12→10
Tmin = 0.331, Tmax = 0.649 l = −22→22
9596 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.050 H atoms treated by a mixture of independent and constrained refinement
S = 1.18 w = 1/[σ2(Fo2) + (0.P)2 + 1.4664P] where P = (Fo2 + 2Fc2)/3
2366 reflections (Δ/σ)max = 0.001
175 parameters Δρmax = 0.76 e Å3
10 restraints Δρmin = −0.81 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Pr1 0.11415 (2) 0.319324 (16) 0.566983 (9) 0.01012 (6)
O1 0.2224 (4) 0.2466 (3) 0.70094 (14) 0.0212 (5)
O2 0.3108 (4) 0.2315 (3) 0.82649 (14) 0.0245 (5)
O3 0.5035 (3) 0.2913 (2) 0.56851 (14) 0.0195 (5)
O4 0.7923 (3) 0.2852 (2) 0.64591 (13) 0.0150 (4)
O5 0.8717 (3) 0.5316 (2) 0.55742 (13) 0.0166 (4)
O6 0.7309 (4) 0.7354 (2) 0.57242 (13) 0.0185 (5)
O7 0.3381 (3) 0.5013 (2) 0.63152 (13) 0.0138 (4)
H7 0.297 (6) 0.574 (2) 0.652 (2) 0.021*
O1W −0.1683 (3) 0.2119 (3) 0.47949 (14) 0.0192 (5)
H11 −0.172 (5) 0.219 (4) 0.4305 (6) 0.029*
H12 −0.289 (3) 0.230 (4) 0.4971 (18) 0.029*
O2W 0.1834 (4) 0.0691 (3) 0.56804 (16) 0.0277 (6)
H21 0.147 (6) −0.001 (3) 0.543 (2) 0.042*
H22 0.300 (4) 0.054 (4) 0.591 (2) 0.042*
O3W 0.5632 (6) −0.0132 (4) 0.6318 (2) 0.0564 (10)
H31 0.617 (8) −0.092 (2) 0.626 (4) 0.085*
H32 0.635 (8) 0.042 (4) 0.605 (3) 0.085*
C1 0.3229 (5) 0.2872 (3) 0.76032 (18) 0.0146 (6)
C2 0.4742 (5) 0.4089 (3) 0.75574 (17) 0.0141 (6)
H2A 0.6066 0.3849 0.7829 0.017*
H2B 0.4118 0.4855 0.7836 0.017*
C3 0.6141 (5) 0.3355 (3) 0.62538 (18) 0.0125 (6)
C4 0.5269 (4) 0.4564 (3) 0.67268 (17) 0.0109 (6)
C5 0.6919 (5) 0.5734 (3) 0.67823 (17) 0.0130 (6)
H5A 0.6285 0.6513 0.7046 0.016*
H5B 0.8134 0.5429 0.7097 0.016*
C6 0.7682 (4) 0.6185 (3) 0.59874 (17) 0.0120 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Pr1 0.00959 (9) 0.01080 (10) 0.00997 (9) 0.00001 (6) 0.00066 (6) 0.00069 (6)
O1 0.0237 (12) 0.0235 (13) 0.0161 (12) −0.0102 (10) −0.0060 (9) 0.0049 (9)
O2 0.0360 (13) 0.0230 (13) 0.0142 (12) −0.0143 (11) −0.0037 (10) 0.0078 (10)
O3 0.0124 (11) 0.0235 (13) 0.0226 (13) 0.0015 (9) −0.0010 (9) −0.0123 (10)
O4 0.0116 (10) 0.0164 (11) 0.0171 (11) 0.0030 (9) 0.0016 (8) 0.0017 (9)
O5 0.0217 (11) 0.0133 (11) 0.0149 (11) 0.0037 (9) 0.0072 (8) 0.0010 (9)
O6 0.0234 (12) 0.0155 (12) 0.0167 (12) 0.0033 (9) 0.0039 (9) 0.0031 (9)
O7 0.0144 (10) 0.0114 (11) 0.0157 (11) 0.0035 (8) −0.0022 (8) −0.0017 (8)
O1W 0.0158 (11) 0.0267 (13) 0.0151 (12) −0.0010 (10) 0.0013 (8) −0.0025 (10)
O2W 0.0334 (14) 0.0158 (13) 0.0336 (15) 0.0004 (11) −0.0102 (11) −0.0021 (11)
O3W 0.056 (2) 0.0331 (18) 0.079 (3) 0.0182 (16) −0.0212 (18) −0.0082 (18)
C1 0.0145 (14) 0.0156 (16) 0.0138 (15) −0.0021 (12) 0.0009 (11) 0.0016 (12)
C2 0.0154 (14) 0.0160 (16) 0.0110 (14) −0.0034 (12) 0.0018 (11) −0.0004 (12)
C3 0.0107 (14) 0.0129 (15) 0.0141 (15) −0.0025 (11) 0.0045 (11) 0.0029 (11)
C4 0.0116 (13) 0.0104 (14) 0.0105 (14) 0.0000 (11) 0.0001 (10) −0.0005 (11)
C5 0.0155 (14) 0.0117 (15) 0.0118 (14) −0.0040 (12) 0.0022 (10) −0.0006 (11)
C6 0.0092 (13) 0.0133 (16) 0.0134 (14) −0.0026 (11) −0.0005 (10) −0.0009 (11)

Geometric parameters (Å, °)

Pr1—O1 2.473 (2) O6—Pr1ii 2.637 (2)
Pr1—O3 2.454 (2) O7—C4 1.432 (3)
Pr1—O4i 2.467 (2) O7—H7 0.834 (10)
Pr1—O5i 2.568 (2) O1W—H11 0.84 (1)
Pr1—O5ii 2.572 (2) O1W—H12 0.84 (1)
Pr1—O6ii 2.637 (2) O2W—H21 0.84 (1)
Pr1—O7 2.502 (2) O2W—H22 0.84 (1)
Pr1—O1W 2.520 (2) O3W—H31 0.84 (1)
Pr1—O2W 2.474 (3) O3W—H32 0.85 (1)
O1—C1 1.246 (4) C1—C2 1.520 (4)
O2—C1 1.255 (4) C2—C4 1.531 (4)
O3—C3 1.257 (4) C2—H2A 0.9700
O4—C3 1.262 (4) C2—H2B 0.9700
O4—Pr1iii 2.467 (2) C3—C4 1.533 (4)
O5—C6 1.284 (4) C4—C5 1.540 (4)
O5—Pr1iii 2.568 (2) C5—C6 1.510 (4)
O5—Pr1ii 2.572 (2) C5—H5A 0.9700
O6—C6 1.244 (4) C5—H5B 0.9700
O3—Pr1—O4i 143.27 (8) C6—O5—Pr1ii 96.06 (18)
O3—Pr1—O1 72.72 (8) Pr1iii—O5—Pr1ii 118.48 (8)
O4i—Pr1—O1 70.79 (7) C6—O6—Pr1ii 94.03 (18)
O3—Pr1—O2W 73.53 (8) C4—O7—Pr1 116.75 (17)
O4i—Pr1—O2W 90.48 (8) C4—O7—H7 108 (3)
O1—Pr1—O2W 70.50 (9) Pr1—O7—H7 128 (3)
O3—Pr1—O7 61.63 (7) Pr1—O1W—H11 124 (3)
O4i—Pr1—O7 108.24 (7) Pr1—O1W—H12 109 (3)
O1—Pr1—O7 69.83 (7) H11—O1W—H12 109 (2)
O2W—Pr1—O7 126.67 (8) Pr1—O2W—H21 139 (3)
O3—Pr1—O1W 130.32 (7) Pr1—O2W—H22 109 (3)
O4i—Pr1—O1W 72.22 (7) H21—O2W—H22 110 (2)
O1—Pr1—O1W 127.21 (8) H31—O3W—H32 107 (2)
O2W—Pr1—O1W 73.54 (8) O1—C1—O2 123.7 (3)
O7—Pr1—O1W 159.37 (8) O1—C1—C2 120.8 (3)
O3—Pr1—O5i 132.58 (7) O2—C1—C2 115.5 (3)
O4i—Pr1—O5i 69.79 (7) C1—C2—C4 115.4 (2)
O1—Pr1—O5i 116.15 (8) C1—C2—H2A 108.4
O2W—Pr1—O5i 153.65 (8) C4—C2—H2A 108.4
O7—Pr1—O5i 77.53 (7) C1—C2—H2B 108.4
O1W—Pr1—O5i 83.60 (7) C4—C2—H2B 108.4
O3—Pr1—O5ii 91.25 (8) H2A—C2—H2B 107.5
O4i—Pr1—O5ii 124.51 (7) O3—C3—O4 123.6 (3)
O1—Pr1—O5ii 155.43 (7) O3—C3—C4 118.1 (3)
O2W—Pr1—O5ii 123.56 (8) O4—C3—C4 118.3 (3)
O7—Pr1—O5ii 86.28 (7) O7—C4—C2 110.8 (2)
O1W—Pr1—O5ii 77.36 (8) O7—C4—C3 106.0 (2)
O5i—Pr1—O5ii 61.52 (8) C2—C4—C3 109.8 (2)
O3—Pr1—O6ii 66.72 (7) O7—C4—C5 110.6 (2)
O4i—Pr1—O6ii 141.46 (7) C2—C4—C5 108.8 (2)
O1—Pr1—O6ii 132.42 (8) C3—C4—C5 110.8 (2)
O2W—Pr1—O6ii 74.95 (8) C6—C5—C4 112.5 (2)
O7—Pr1—O6ii 109.04 (7) C6—C5—H5A 109.1
O1W—Pr1—O6ii 69.47 (7) C4—C5—H5A 109.1
O5i—Pr1—O6ii 109.42 (7) C6—C5—H5B 109.1
O5ii—Pr1—O6ii 49.65 (7) C4—C5—H5B 109.1
C1—O1—Pr1 141.7 (2) H5A—C5—H5B 107.8
C3—O3—Pr1 120.28 (19) O6—C6—O5 119.9 (3)
C3—O4—Pr1iii 121.60 (19) O6—C6—C5 122.0 (3)
C6—O5—Pr1iii 143.1 (2) O5—C6—C5 118.1 (3)
O3—Pr1—O1—C1 67.4 (4) Pr1—O3—C3—O4 152.9 (2)
O4i—Pr1—O1—C1 −116.8 (4) Pr1—O3—C3—C4 −26.6 (4)
O2W—Pr1—O1—C1 145.6 (4) Pr1iii—O4—C3—O3 72.0 (4)
O7—Pr1—O1—C1 2.0 (3) Pr1iii—O4—C3—C4 −108.5 (3)
O1W—Pr1—O1—C1 −164.6 (3) Pr1—O7—C4—C2 −83.4 (2)
O5i—Pr1—O1—C1 −62.1 (4) Pr1—O7—C4—C3 35.7 (3)
O5ii—Pr1—O1—C1 16.1 (5) Pr1—O7—C4—C5 155.86 (18)
O6ii—Pr1—O1—C1 99.8 (4) C1—C2—C4—O7 61.8 (3)
O4i—Pr1—O3—C3 −49.7 (3) C1—C2—C4—C3 −55.0 (3)
O1—Pr1—O3—C3 −43.1 (2) C1—C2—C4—C5 −176.4 (3)
O2W—Pr1—O3—C3 −117.3 (2) O3—C3—C4—O7 −6.7 (4)
O7—Pr1—O3—C3 32.9 (2) O4—C3—C4—O7 173.7 (2)
O1W—Pr1—O3—C3 −167.6 (2) O3—C3—C4—C2 113.0 (3)
O5i—Pr1—O3—C3 66.8 (3) O4—C3—C4—C2 −66.5 (3)
O5ii—Pr1—O3—C3 118.0 (2) O3—C3—C4—C5 −126.7 (3)
O6ii—Pr1—O3—C3 162.4 (3) O4—C3—C4—C5 53.7 (4)
O3—Pr1—O7—C4 −35.86 (18) O7—C4—C5—C6 −63.2 (3)
O4i—Pr1—O7—C4 105.51 (18) C2—C4—C5—C6 175.0 (2)
O1—Pr1—O7—C4 44.86 (18) C3—C4—C5—C6 54.1 (3)
O2W—Pr1—O7—C4 0.7 (2) Pr1ii—O6—C6—O5 6.0 (3)
O1W—Pr1—O7—C4 −166.6 (2) Pr1ii—O6—C6—C5 −173.0 (2)
O5i—Pr1—O7—C4 169.07 (19) Pr1iii—O5—C6—O6 153.9 (2)
O5ii—Pr1—O7—C4 −129.30 (19) Pr1ii—O5—C6—O6 −6.2 (3)
O6ii—Pr1—O7—C4 −84.44 (19) Pr1iii—O5—C6—C5 −27.1 (4)
Pr1—O1—C1—O2 164.9 (2) Pr1ii—O5—C6—C5 172.8 (2)
Pr1—O1—C1—C2 −16.3 (5) Pr1iii—O5—C6—Pr1ii 160.0 (3)
O1—C1—C2—C4 −11.9 (4) C4—C5—C6—O6 114.9 (3)
O2—C1—C2—C4 167.0 (3) C4—C5—C6—O5 −64.0 (3)

Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y+1, −z+1; (iii) x+1, y, z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O7—H7···O2iv 0.83 (1) 1.72 (1) 2.536 (3) 167 (4)
O1w—H11···O2v 0.84 (1) 1.84 (1) 2.666 (3) 169 (4)
O1w—H12···O3i 0.84 (1) 1.89 (2) 2.692 (3) 159 (3)
O2w—H21···O1wvi 0.84 (1) 2.09 (2) 2.854 (4) 151 (4)
O2w—H22···O3w 0.84 (1) 1.89 (1) 2.718 (4) 168 (4)
O3w—H31···O6vii 0.84 (1) 2.05 (2) 2.856 (4) 160 (6)

Symmetry codes: (iv) −x+1/2, y+1/2, −z+3/2; (v) x−1/2, −y+1/2, z−1/2; (i) x−1, y, z; (vi) −x, −y, −z+1; (vii) x, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SI2362).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  2. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  3. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  4. Rigaku/MSC (2002). CrystalStructure Rigaku/MSC, The Woodlands, Texas, USA.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Tang, S.-D., Deng, Y.-F. & Zhan, S.-Z. (2011). Chin. J. Struct. Chem. 30, 424–430.
  7. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811023804/si2362sup1.cif

e-67-0m981-sup1.cif (18.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023804/si2362Isup2.hkl

e-67-0m981-Isup2.hkl (116.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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