Abstract
The complete molecule in the title compound, C22H20N2O4, is generated by the application of an inversion centre. With the exception of the terminal acetylene groups [C—O—C—C = −78.02 (17)°], the remaining atoms constituting the molecule are essentially coplanar. The configuration around the C=N bond [1.282 (2) Å] is E. The formation of supramolecular chains mediated by C—H⋯O interactions, occurring between methylene H and methoxy O atoms, is the most notable feature of the crystal packing.
Related literature
For background to the study see: Xu et al. (1997 ▶); Zheng et al. (2005 ▶); Kundu et al. (2005 ▶). For additional analysis, see: Spek (2009 ▶).
Experimental
Crystal data
C22H20N2O4
M r = 376.40
Monoclinic,
a = 4.4840 (3) Å
b = 14.4636 (8) Å
c = 14.3939 (9) Å
β = 91.674 (4)°
V = 933.11 (10) Å3
Z = 2
Mo Kα radiation
μ = 0.09 mm−1
T = 100 K
0.25 × 0.11 × 0.07 mm
Data collection
Bruker SMART APEX CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.368, T max = 0.746
8574 measured reflections
2138 independent reflections
1625 reflections with I > 2σ(I)
R int = 0.069
Refinement
R[F 2 > 2σ(F 2)] = 0.046
wR(F 2) = 0.124
S = 1.05
2138 reflections
128 parameters
H-atom parameters constrained
Δρmax = 0.26 e Å−3
Δρmin = −0.25 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811022410/hb5907sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022410/hb5907Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811022410/hb5907Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C8—H8a⋯O2i | 0.99 | 2.36 | 3.255 (2) | 150 |
Symmetry code: (i)
.
Acknowledgments
The University of Malaya is thanked for support of this research through a research grant (No. FRGS FP001/2010 A) and for the maintenance of the crystallographic facility.
supplementary crystallographic information
Comment
Molecules combining an azine functionality and/or a diimine linkage have been investigated in terms of their crystallography and coordination chemistry (Xu et al., 1997; Zheng et al., 2005; Kundu et al., 2005). In this connection the title compound, (I), was studied.
The molecule of (I), Fig. 1, is centrosymmetric around the central azine [N1—N1i = 1.413 (2) Å] bond; symmetry operation i: 1 - x, 1 - y, -z. The configuration around the C1═N1 bond [1.282 (2) Å] is E. With the exception of the terminal acetylene group, the molecule is essentially planar as seen in the values of the N1—C1—C2—C7 and C11—O2—C6—C5 torsion angles of 2.9 (2) and 177.04 (14) °, respectively. By contrast, the torsion angle C5—O1—C8—C9 of -78.02 (17) ° indicates the acetylene group is almost perpendicular to the rest of the molecule.
The most prominent feature of the crystal packing is the presence of C—H···O interactions, occurring between methylene-H and the methoxy-O atoms, which serve to link molecules into supramolecular chains mediated by centrosymmetric 12-membered {···HCOC2O}2 synthons, Table 1 and Fig. 2. Chains pack in the ac plane and interdigitate along the b axis., Fig. 3. Each acetylene-H atom is orientated towards an imino-N atom, being separated by 2.77 Å, i.e. outside the standard criteria to be considered significant (Spek, 2009).
Experimental
Vanillinazine (2.0 g, 6.7 mmol) in dry acetone and anhydrous K2CO3 (1.84 g, 13.3 mmol) was stirred at room temperature for about 20 min. Then, an excess of propargyl bromide (1.74 g, 14.7 mmol) was added drop wise. The mixture was refluxed for 48 h. The solvent was evaporated under reduced pressure and the product extracted with 100 ml diethyl ether. The organic layer was washed with brine and dried over MgSO4. The yellow compound was recrystallized from ethyl acetate/methanol (1/1) solution to yield yellow needles of (I); yield 72% and M.pt. 460 K.
Refinement
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.99 Å) and were included in the refinement in the riding model approximation with Uiso(H) = 1.2–1.5Ueq(C).
Figures
Fig. 1.
The molecular structure of centrosymmetric compound (I) showing displacement ellipsoids at the 50% probability level. Symmetry code i: 1 - x, 1 - y, -z.
Fig. 2.
A view of the supramolecular chains in (I) mediated by C—H···O interactions (orange dashed lines) and their aggregation into layers in the ac plane.
Fig. 3.
A view in projection down the a axis of the unit-cell contents for (I); the C—H···O interactions are shown as orange dashed lines.
Crystal data
| C22H20N2O4 | F(000) = 396 |
| Mr = 376.40 | Dx = 1.340 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 1658 reflections |
| a = 4.4840 (3) Å | θ = 2.8–29.5° |
| b = 14.4636 (8) Å | µ = 0.09 mm−1 |
| c = 14.3939 (9) Å | T = 100 K |
| β = 91.674 (4)° | Needle, yellow |
| V = 933.11 (10) Å3 | 0.25 × 0.11 × 0.07 mm |
| Z = 2 |
Data collection
| Bruker SMART APEX CCD diffractometer | 2138 independent reflections |
| Radiation source: fine-focus sealed tube | 1625 reflections with I > 2σ(I) |
| graphite | Rint = 0.069 |
| ω scans | θmax = 27.5°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −5→5 |
| Tmin = 0.368, Tmax = 0.746 | k = −18→18 |
| 8574 measured reflections | l = −18→18 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.124 | H-atom parameters constrained |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0481P)2 + 0.2035P] where P = (Fo2 + 2Fc2)/3 |
| 2138 reflections | (Δ/σ)max < 0.001 |
| 128 parameters | Δρmax = 0.26 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
Special details
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 1.2641 (2) | 0.54779 (7) | 0.43315 (7) | 0.0201 (3) | |
| O2 | 1.3374 (2) | 0.41802 (7) | 0.31509 (8) | 0.0218 (3) | |
| N1 | 0.5998 (3) | 0.49139 (8) | 0.03789 (9) | 0.0204 (3) | |
| C1 | 0.5930 (3) | 0.55648 (10) | 0.09829 (11) | 0.0195 (4) | |
| H1 | 0.4638 | 0.6075 | 0.0867 | 0.023* | |
| C2 | 0.7742 (3) | 0.55572 (10) | 0.18375 (11) | 0.0187 (3) | |
| C3 | 0.7351 (3) | 0.62536 (10) | 0.24843 (11) | 0.0201 (4) | |
| H3 | 0.5955 | 0.6733 | 0.2351 | 0.024* | |
| C4 | 0.8968 (3) | 0.62633 (10) | 0.33254 (11) | 0.0192 (3) | |
| H4 | 0.8694 | 0.6750 | 0.3758 | 0.023* | |
| C5 | 1.0972 (3) | 0.55612 (9) | 0.35270 (10) | 0.0170 (3) | |
| C6 | 1.1383 (3) | 0.48469 (9) | 0.28727 (11) | 0.0178 (3) | |
| C7 | 0.9810 (3) | 0.48486 (9) | 0.20414 (11) | 0.0182 (3) | |
| H7 | 1.0117 | 0.4370 | 0.1602 | 0.022* | |
| C8 | 1.2080 (4) | 0.61172 (10) | 0.50702 (11) | 0.0209 (4) | |
| H8A | 1.2888 | 0.5857 | 0.5662 | 0.025* | |
| H8B | 0.9898 | 0.6189 | 0.5128 | 0.025* | |
| C9 | 1.3423 (4) | 0.70363 (10) | 0.49229 (11) | 0.0214 (4) | |
| C10 | 1.4542 (4) | 0.77718 (11) | 0.48483 (12) | 0.0262 (4) | |
| H10 | 1.5441 | 0.8363 | 0.4788 | 0.031* | |
| C11 | 1.3762 (4) | 0.34187 (10) | 0.25333 (12) | 0.0255 (4) | |
| H11A | 1.1830 | 0.3121 | 0.2405 | 0.038* | |
| H11B | 1.5142 | 0.2971 | 0.2821 | 0.038* | |
| H11C | 1.4578 | 0.3642 | 0.1950 | 0.038* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0245 (6) | 0.0180 (5) | 0.0174 (6) | 0.0022 (4) | −0.0053 (5) | −0.0022 (4) |
| O2 | 0.0261 (6) | 0.0161 (5) | 0.0228 (6) | 0.0055 (4) | −0.0061 (5) | −0.0030 (4) |
| N1 | 0.0202 (7) | 0.0225 (6) | 0.0182 (7) | −0.0017 (5) | −0.0047 (6) | 0.0031 (5) |
| C1 | 0.0185 (8) | 0.0176 (7) | 0.0223 (8) | −0.0017 (6) | −0.0020 (7) | 0.0035 (6) |
| C2 | 0.0180 (8) | 0.0171 (7) | 0.0209 (8) | −0.0036 (6) | −0.0014 (7) | 0.0025 (6) |
| C3 | 0.0184 (8) | 0.0160 (7) | 0.0260 (9) | 0.0001 (6) | −0.0019 (7) | 0.0029 (6) |
| C4 | 0.0221 (8) | 0.0150 (7) | 0.0207 (8) | −0.0009 (6) | 0.0004 (7) | −0.0012 (6) |
| C5 | 0.0176 (8) | 0.0162 (7) | 0.0171 (8) | −0.0029 (6) | −0.0013 (6) | 0.0016 (5) |
| C6 | 0.0172 (8) | 0.0132 (7) | 0.0230 (8) | −0.0006 (6) | −0.0007 (6) | 0.0023 (6) |
| C7 | 0.0195 (8) | 0.0148 (7) | 0.0202 (8) | −0.0019 (6) | −0.0002 (6) | −0.0013 (5) |
| C8 | 0.0259 (9) | 0.0211 (7) | 0.0154 (8) | 0.0006 (6) | −0.0024 (7) | −0.0026 (6) |
| C9 | 0.0245 (9) | 0.0227 (8) | 0.0169 (8) | 0.0031 (6) | −0.0020 (7) | −0.0032 (6) |
| C10 | 0.0325 (10) | 0.0215 (8) | 0.0244 (9) | 0.0001 (7) | −0.0031 (8) | −0.0031 (6) |
| C11 | 0.0293 (9) | 0.0176 (7) | 0.0293 (9) | 0.0034 (6) | −0.0056 (8) | −0.0055 (6) |
Geometric parameters (Å, °)
| O1—C5 | 1.3655 (17) | C4—H4 | 0.9500 |
| O1—C8 | 1.4368 (18) | C5—C6 | 1.414 (2) |
| O2—C6 | 1.3664 (16) | C6—C7 | 1.371 (2) |
| O2—C11 | 1.4292 (18) | C7—H7 | 0.9500 |
| N1—C1 | 1.282 (2) | C8—C9 | 1.477 (2) |
| N1—N1i | 1.413 (2) | C8—H8A | 0.9900 |
| C1—C2 | 1.454 (2) | C8—H8B | 0.9900 |
| C1—H1 | 0.9500 | C9—C10 | 1.182 (2) |
| C2—C3 | 1.386 (2) | C10—H10 | 0.9500 |
| C2—C7 | 1.407 (2) | C11—H11A | 0.9800 |
| C3—C4 | 1.393 (2) | C11—H11B | 0.9800 |
| C3—H3 | 0.9500 | C11—H11C | 0.9800 |
| C4—C5 | 1.381 (2) | ||
| C5—O1—C8 | 117.87 (11) | O2—C6—C5 | 114.66 (13) |
| C6—O2—C11 | 116.87 (11) | C7—C6—C5 | 120.43 (13) |
| C1—N1—N1i | 111.53 (15) | C6—C7—C2 | 120.15 (14) |
| N1—C1—C2 | 122.96 (14) | C6—C7—H7 | 119.9 |
| N1—C1—H1 | 118.5 | C2—C7—H7 | 119.9 |
| C2—C1—H1 | 118.5 | O1—C8—C9 | 113.08 (13) |
| C3—C2—C7 | 118.98 (14) | O1—C8—H8A | 109.0 |
| C3—C2—C1 | 118.95 (13) | C9—C8—H8A | 109.0 |
| C7—C2—C1 | 122.03 (14) | O1—C8—H8B | 109.0 |
| C2—C3—C4 | 121.22 (14) | C9—C8—H8B | 109.0 |
| C2—C3—H3 | 119.4 | H8A—C8—H8B | 107.8 |
| C4—C3—H3 | 119.4 | C10—C9—C8 | 176.86 (17) |
| C5—C4—C3 | 119.61 (14) | C9—C10—H10 | 180.0 |
| C5—C4—H4 | 120.2 | O2—C11—H11A | 109.5 |
| C3—C4—H4 | 120.2 | O2—C11—H11B | 109.5 |
| O1—C5—C4 | 125.46 (13) | H11A—C11—H11B | 109.5 |
| O1—C5—C6 | 114.94 (12) | O2—C11—H11C | 109.5 |
| C4—C5—C6 | 119.60 (13) | H11A—C11—H11C | 109.5 |
| O2—C6—C7 | 124.90 (13) | H11B—C11—H11C | 109.5 |
| N1i—N1—C1—C2 | 179.28 (15) | C11—O2—C6—C5 | 177.04 (14) |
| N1—C1—C2—C3 | −174.95 (15) | O1—C5—C6—O2 | 0.4 (2) |
| N1—C1—C2—C7 | 2.9 (2) | C4—C5—C6—O2 | −178.85 (13) |
| C7—C2—C3—C4 | 0.2 (2) | O1—C5—C6—C7 | 179.38 (13) |
| C1—C2—C3—C4 | 178.11 (14) | C4—C5—C6—C7 | 0.1 (2) |
| C2—C3—C4—C5 | −0.9 (2) | O2—C6—C7—C2 | 178.03 (14) |
| C8—O1—C5—C4 | 6.4 (2) | C5—C6—C7—C2 | −0.8 (2) |
| C8—O1—C5—C6 | −172.80 (13) | C3—C2—C7—C6 | 0.7 (2) |
| C3—C4—C5—O1 | −178.48 (15) | C1—C2—C7—C6 | −177.22 (15) |
| C3—C4—C5—C6 | 0.7 (2) | C5—O1—C8—C9 | −78.02 (17) |
| C11—O2—C6—C7 | −1.8 (2) | O1—C8—C9—C10 | −136 (3) |
Symmetry codes: (i) −x+1, −y+1, −z.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C8—H8a···O2ii | 0.99 | 2.36 | 3.255 (2) | 150 |
Symmetry codes: (ii) −x+3, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5907).
References
- Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Bruker (2009). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Kundu, N., Chatterjee, P. B., Chaudhury, M. & Tiekink, E. R. T. (2005). Acta Cryst. E61, m1583–m1585.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811022410/hb5907sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022410/hb5907Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811022410/hb5907Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



