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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 30;67(Pt 7):m998. doi: 10.1107/S1600536811024330

Poly[[diaqua-μ6-succinato-di-μ5-succinato-didysprosium(III)] mono­hydrate]

Wei Xu a,*, Hai-Sheng Chang a, Xia-Xia Guo a
PMCID: PMC3152080  PMID: 21836969

Abstract

The title compound, {[Dy2(C4H4O4)3(H2O)2]·H2O}n, is isostructural with other lanthanide succinates of the same formula. The DyIII atom is nine-coordinated in a tricapped trigonal–prismatic environment by eight O atoms, derived from six carboxyl­ate groups and a water mol­ecule. One of the independent succinate anions is located about a crystallographic inversion center and the uncoordinated water mol­ecule lies on a twofold axis. The crystal structure comprises edge-shared DyO9 polyhedra linked by succinate bridges, forming a three-dimensional network architecture. Intra- and inter­molecular O—H⋯O hydrogen bonds are present in the crystal structure.

Related literature

For related compounds, see: Perles et al. (2004); Serpaggi & Ferey (1999); He et al. (2007); Seguatni et al. (2004); Zhou et al. (2005); Cui et al. (2005); Yu et al. (2006); Li (2007). graphic file with name e-67-0m998-scheme1.jpg

Experimental

Crystal data

  • [Dy2(C4H4O4)3(H2O)2]·H2O

  • M r = 727.26

  • Monoclinic, Inline graphic

  • a = 19.981 (4) Å

  • b = 7.7616 (16) Å

  • c = 13.868 (3) Å

  • β = 121.49 (3)°

  • V = 1834.0 (9) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 8.17 mm−1

  • T = 293 K

  • 0.45 × 0.20 × 0.14 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.154, T max = 0.319

  • 8691 measured reflections

  • 2093 independent reflections

  • 2016 reflections with I > 2σ(I)

  • R int = 0.018

Refinement

  • R[F 2 > 2σ(F 2)] = 0.016

  • wR(F 2) = 0.038

  • S = 1.09

  • 2093 reflections

  • 133 parameters

  • H-atom parameters constrained

  • Δρmax = 0.78 e Å−3

  • Δρmin = −0.73 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024330/vm2100sup1.cif

e-67-0m998-sup1.cif (16.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024330/vm2100Isup2.hkl

e-67-0m998-Isup2.hkl (103KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O7—H7A⋯O3i 0.85 2.07 2.878 (3) 158
O7—H7B⋯O2ii 0.85 1.86 2.710 (3) 174
O8—H8W⋯O7 0.85 2.17 2.949 (4) 153

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This project was supported by the Scientific Research Fund of Zhejiang Provincial Education Department (grant No. Y201017782). Thanks are also extended to the K. C. Wong Magna Fund of Ningbo University.

supplementary crystallographic information

Comment

There is considerable interest in the study of coordination frameworks with suitable rigid multidentate ligands. Especially those having long chain dicarboxylates present interesting behavior owing to their conformational flexibility and coordination diversity. Lanthanide ions exhibit high affinity for oxygen and diverse coordination modes. In an attempt to further understand the formation of lanthanide–organic framework materials, we present here the hydrothermal synthesis and crystal structure of a new Ln–succinate complex, (I).

The title compound, (I), is isostructural with the known Ln–succinate complexes where Ln = Y and La (Perles et al., 2004), Pr (Serpaggi & Ferey, 1999), Nd (He et al., 2007), Sm (Seguatni et al., 2004), Gd (Zhou et al., 2005), Tb (Cui et al., 2005), Ho (Yu et al., 2006), and Er (Li, 2007) analogs, but it represents the first reported succinate coordination polymer of dysprosium (III).

The asymmetric unit in (I) comprises a Dy atom, one and a half succinate anions, a coordinated water molecule and half an uncoordinated water molecule (Fig. 1). The complete second succinate dianion, containing O5 and O6, is generated from the half-ion by inversion and the uncoordinated water molecule O atom is located on a twofold axis. The DyIII ion is nine-coordinated within a tricapped trigonal-prismatic geometry defined by eight O atoms, derived from six carboxylate anions, and a water molecule. The crystal structure comprises edge–sharing DyO8(OH2) polyhedra forming chains along the b–axis direction by sharing one edge with each neigboring polyhedron. The Dy···Dy distance within chains is 4.046 (1) Å. These chains are in turn linked via succinate bridges, forming a three-dimensional framework (Fig. 2.). Intra- and intermolecular O–H···O hydrogen bonds are present in the crystal structure (Table 1).

Experimental

A mixture of Dy(NO3)3.7H2O (0.1316 g, 0.30 mmol), succinic acid (0.0354 g, 0.30 mmol), 1,10-phenanthroline (0.0595 g, 0.30 mmol), water (10 ml) was adjusted to a pH = 5.25 by NaOH solution. The mixture was sealed in a Teflon-lined stainless steel reactor and heated at 443 K for 3 d. After the reaction system had cooled slowly to room temperature, a small quantity of colourless crystals was isolated.

Refinement

H atoms bonded to C atoms were placed in their geometrically calculated positions and refined using the riding model, with C–H distances 0.97 Å and Uiso(H) = 1.2 Ueq(C). H atoms attached to O atoms were found in a difference Fourier map and then refined using the riding model, with O–H distances fixed as initially found and with O–H distances 0.85 Å and Uiso(H) values set at 1.2 Ueq(O).

Figures

Fig. 1.

Fig. 1.

The coordination environment of the DyIII ion in (I), showing the atom labeling and dispacement ellipsoids drawn at the 45% probability level. H atoms have been removed for clarity. [Symmetry codes: (i) -x + 2, -y + 1, -z + 2; (ii) -x, -y, -z + 1; (iii) -x + 1/2, y - 1/2, -z + 1/2; (iv) -x + 1, -y + 2, -z + 1.]

Fig. 2.

Fig. 2.

View of the packing in (I), drawing the tricapped trigonal-prismatic geometry of DyIII in green. H atoms have been removed for clarity.

Crystal data

[Dy2(C4H4O4)3(H2O)2]·H2O F(000) = 1368
Mr = 727.26 Dx = 2.634 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 8350 reflections
a = 19.981 (4) Å θ = 3.0–27.5°
b = 7.7616 (16) Å µ = 8.17 mm1
c = 13.868 (3) Å T = 293 K
β = 121.49 (3)° Prism, colorless
V = 1834.0 (9) Å3 0.45 × 0.20 × 0.14 mm
Z = 4

Data collection

Rigaku R-AXIS RAPID diffractometer 2093 independent reflections
Radiation source: fine-focus sealed tube 2016 reflections with I > 2σ(I)
graphite Rint = 0.018
ω scans θmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) h = −25→25
Tmin = 0.154, Tmax = 0.319 k = −10→9
8691 measured reflections l = −17→17

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.016 H-atom parameters constrained
wR(F2) = 0.038 w = 1/[σ2(Fo2) + (0.0112P)2 + 12.5672P] where P = (Fo2 + 2Fc2)/3
S = 1.09 (Δ/σ)max = 0.005
2093 reflections Δρmax = 0.78 e Å3
133 parameters Δρmin = −0.73 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.00050 (4)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Dy 0.268767 (7) 0.716662 (17) 0.229964 (11) 0.01104 (6)
O1 0.18695 (12) 0.9822 (3) 0.13564 (17) 0.0161 (4)
O2 0.16984 (14) 0.7651 (3) 0.02657 (18) 0.0179 (4)
O3 0.19605 (15) 1.2559 (3) −0.1745 (2) 0.0225 (5)
O4 0.18010 (14) 0.9767 (3) −0.1583 (2) 0.0214 (5)
C1 0.15245 (16) 0.9157 (4) 0.0371 (2) 0.0118 (5)
C2 0.09015 (17) 1.0166 (4) −0.0632 (2) 0.0152 (6)
H2A 0.0506 1.0544 −0.0473 0.018*
H2B 0.0648 0.9413 −0.1286 0.018*
C3 0.12259 (19) 1.1741 (4) −0.0920 (3) 0.0167 (6)
H3A 0.0791 1.2478 −0.1429 0.020*
H3B 0.1556 1.2388 −0.0231 0.020*
C4 0.16978 (17) 1.1315 (4) −0.1461 (2) 0.0131 (5)
O5 0.32431 (11) 0.9822 (3) 0.34063 (17) 0.0142 (4)
O6 0.40702 (13) 0.7716 (3) 0.3808 (2) 0.0195 (5)
C5 0.39496 (16) 0.9239 (4) 0.3932 (2) 0.0131 (5)
C6 0.46055 (17) 1.0439 (4) 0.4690 (3) 0.0240 (7)
H6A 0.4498 1.0936 0.5237 0.029*
H6B 0.4624 1.1373 0.4239 0.029*
O7 0.33328 (14) 0.8880 (3) 0.15135 (19) 0.0200 (5)
H7A 0.3304 0.9973 0.1475 0.024*
H7B 0.3319 0.8471 0.0935 0.024*
O8 0.5000 0.9782 (13) 0.2500 0.123 (3)
H8W 0.4592 0.9198 0.2324 0.147*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Dy 0.01269 (8) 0.00799 (8) 0.01316 (8) −0.00046 (5) 0.00725 (6) −0.00019 (5)
O1 0.0165 (10) 0.0156 (10) 0.0126 (9) 0.0015 (8) 0.0050 (8) −0.0025 (8)
O2 0.0279 (12) 0.0099 (10) 0.0135 (10) 0.0003 (9) 0.0091 (9) 0.0001 (8)
O3 0.0366 (14) 0.0109 (10) 0.0342 (13) 0.0015 (9) 0.0285 (12) 0.0030 (9)
O4 0.0332 (13) 0.0104 (10) 0.0346 (13) 0.0020 (9) 0.0274 (11) 0.0002 (9)
C1 0.0120 (13) 0.0136 (14) 0.0121 (12) −0.0052 (11) 0.0079 (11) −0.0001 (11)
C2 0.0122 (13) 0.0200 (15) 0.0132 (13) 0.0005 (11) 0.0064 (11) 0.0030 (12)
C3 0.0235 (15) 0.0137 (14) 0.0195 (14) 0.0058 (12) 0.0157 (13) 0.0048 (12)
C4 0.0159 (13) 0.0105 (13) 0.0144 (13) 0.0015 (11) 0.0088 (11) 0.0026 (11)
O5 0.0083 (9) 0.0153 (10) 0.0146 (9) 0.0004 (8) 0.0030 (8) −0.0041 (8)
O6 0.0127 (10) 0.0118 (10) 0.0261 (12) 0.0008 (8) 0.0046 (9) −0.0003 (9)
C5 0.0103 (13) 0.0148 (14) 0.0130 (12) −0.0017 (11) 0.0054 (11) 0.0012 (11)
C6 0.0108 (14) 0.0159 (15) 0.0325 (18) −0.0014 (12) 0.0024 (13) −0.0079 (14)
O7 0.0320 (13) 0.0134 (11) 0.0247 (11) −0.0033 (9) 0.0219 (10) −0.0024 (9)
O8 0.090 (6) 0.136 (8) 0.139 (7) 0.000 0.058 (6) 0.000

Geometric parameters (Å, °)

Dy—O4i 2.312 (2) C2—C3 1.531 (4)
Dy—O5ii 2.414 (2) C2—H2A 0.9700
Dy—O1ii 2.417 (2) C2—H2B 0.9700
Dy—O3iii 2.434 (2) C3—C4 1.517 (4)
Dy—O5 2.461 (2) C3—H3A 0.9700
Dy—O7 2.467 (2) C3—H3B 0.9700
Dy—O6 2.480 (2) O5—C5 1.286 (3)
Dy—O2 2.486 (2) O5—Dyiv 2.414 (2)
Dy—O1 2.529 (2) O6—C5 1.236 (4)
O1—C1 1.275 (3) C5—C6 1.500 (4)
O1—Dyiv 2.417 (2) C6—C6vi 1.508 (6)
O2—C1 1.249 (4) C6—H6A 0.9700
O3—C4 1.257 (4) C6—H6B 0.9700
O3—Dyv 2.434 (2) O7—H7A 0.8500
O4—C4 1.246 (4) O7—H7B 0.8501
O4—Dyi 2.312 (2) O8—H8W 0.8503
C1—C2 1.513 (4)
O4i—Dy—O5ii 75.88 (8) O6—Dy—C1 133.45 (8)
O4i—Dy—O1ii 77.11 (8) O2—Dy—C1 25.28 (8)
O5ii—Dy—O1ii 68.86 (8) O1—Dy—C1 25.96 (7)
O4i—Dy—O3iii 144.52 (8) C5—Dy—C1 112.44 (9)
O5ii—Dy—O3iii 74.58 (8) C1—O1—Dyiv 155.0 (2)
O1ii—Dy—O3iii 74.22 (8) C1—O1—Dy 93.77 (18)
O4i—Dy—O5 130.94 (8) Dyiv—O1—Dy 109.71 (8)
O5ii—Dy—O5 152.29 (2) C1—O2—Dy 96.55 (17)
O1ii—Dy—O5 106.58 (7) C4—O3—Dyv 134.7 (2)
O3iii—Dy—O5 77.89 (7) C4—O4—Dyi 145.7 (2)
O4i—Dy—O7 73.12 (8) O2—C1—O1 118.4 (3)
O5ii—Dy—O7 134.18 (7) O2—C1—C2 121.5 (3)
O1ii—Dy—O7 132.93 (8) O1—C1—C2 120.0 (3)
O3iii—Dy—O7 142.35 (7) O2—C1—Dy 58.17 (15)
O5—Dy—O7 69.79 (7) O1—C1—Dy 60.27 (15)
O4i—Dy—O6 85.79 (8) C2—C1—Dy 178.43 (19)
O5ii—Dy—O6 138.96 (7) C1—C2—C3 113.3 (2)
O1ii—Dy—O6 71.41 (8) C1—C2—H2A 108.9
O3iii—Dy—O6 104.14 (9) C3—C2—H2A 108.9
O5—Dy—O6 52.36 (7) C1—C2—H2B 108.9
O7—Dy—O6 70.81 (8) C3—C2—H2B 108.9
O4i—Dy—O2 83.01 (8) H2A—C2—H2B 107.7
O5ii—Dy—O2 70.51 (7) C4—C3—C2 114.3 (3)
O1ii—Dy—O2 137.94 (7) C4—C3—H3A 108.7
O3iii—Dy—O2 104.93 (9) C2—C3—H3A 108.7
O5—Dy—O2 114.41 (7) C4—C3—H3B 108.7
O7—Dy—O2 72.92 (8) C2—C3—H3B 108.7
O6—Dy—O2 143.72 (8) H3A—C3—H3B 107.6
O4i—Dy—O1 128.17 (8) O4—C4—O3 124.9 (3)
O5ii—Dy—O1 104.58 (7) O4—C4—C3 117.9 (3)
O1ii—Dy—O1 152.80 (2) O3—C4—C3 117.2 (3)
O3iii—Dy—O1 78.58 (8) C5—O5—Dyiv 151.66 (19)
O5—Dy—O1 66.36 (7) C5—O5—Dy 93.61 (17)
O7—Dy—O1 71.21 (7) Dyiv—O5—Dy 112.19 (8)
O6—Dy—O1 115.49 (7) C5—O6—Dy 93.98 (17)
O2—Dy—O1 51.24 (7) O6—C5—O5 119.6 (3)
O4i—Dy—C5 107.57 (9) O6—C5—C6 121.9 (3)
O5ii—Dy—C5 157.37 (7) O5—C5—C6 118.5 (3)
O1ii—Dy—C5 89.81 (8) O6—C5—Dy 60.34 (15)
O3iii—Dy—C5 92.88 (8) O5—C5—Dy 59.60 (15)
O5—Dy—C5 26.79 (8) C6—C5—Dy 174.0 (2)
O7—Dy—C5 66.22 (8) C5—C6—C6vi 112.9 (3)
O6—Dy—C5 25.67 (8) C5—C6—H6A 109.0
O2—Dy—C5 131.74 (8) C6vi—C6—H6A 109.0
O1—Dy—C5 90.89 (8) C5—C6—H6B 109.0
O4i—Dy—C1 105.65 (8) C6vi—C6—H6B 109.0
O5ii—Dy—C1 87.20 (8) H6A—C6—H6B 107.8
O1ii—Dy—C1 154.72 (7) Dy—O7—H7A 122.1
O3iii—Dy—C1 92.12 (8) Dy—O7—H7B 116.7
O5—Dy—C1 90.70 (8) H7A—O7—H7B 110.3
O7—Dy—C1 70.00 (8)

Symmetry codes: (i) −x+1/2, −y+3/2, −z; (ii) −x+1/2, y−1/2, −z+1/2; (iii) x, −y+2, z+1/2; (iv) −x+1/2, y+1/2, −z+1/2; (v) x, −y+2, z−1/2; (vi) −x+1, −y+2, −z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O7—H7A···O3vii 0.85 2.07 2.878 (3) 158
O7—H7B···O2i 0.85 1.86 2.710 (3) 174
O8—H8W···O7 0.85 2.17 2.949 (4) 153

Symmetry codes: (vii) −x+1/2, −y+5/2, −z; (i) −x+1/2, −y+3/2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: VM2100).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024330/vm2100sup1.cif

e-67-0m998-sup1.cif (16.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024330/vm2100Isup2.hkl

e-67-0m998-Isup2.hkl (103KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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