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. Author manuscript; available in PMC: 2012 Aug 23.
Published in final edited form as: Macromolecules. 2011 Aug 23;44(16):6594–6604. doi: 10.1021/ma201277e

Table 1.

Summary of scaling exponents 〈X〉 ~ Dx for the extension of DNA as a function of the channel size in the shaded transition regime of Figure 1. The Monte Carlo simulation data correspond to long chains (L/lp ≅ 40 and lp/w ≅ 20) for channels sizes ranging approximately from lp to 2lp. For the experimental data reported in the last four rows, the parameter D is the geometric average of the channel width and height, Dav. The rectangular channels range from Dav = 60–440 nm and the tapered channels range from Dav = 100–250 nm. The two different values for T4-DNA (166.7 kilobase pairs, L = 56.7 μm) correspond to different basepair-to-dye ratios.

Approach Exponent Reference
Flory Theory (ν = 3/5) −2/3 Ref. 15,33
Flory Theory (ν = 0.5877) −0.7015 Eq. (3)
Monte Carlo Simulation −1 Ref. 13,14
λ,-DNA, rectangular channel −0.85±0.05 Ref. 9
λ,-DNA, tapered channel −0.85±0.01 Ref. 34
T4-DNA, tapered channel −0.83±0.01 Ref. 34
T4-DNA, tapered channel −0.78±0.01 Ref. 34