Table 1.
Crystal | wt + tartrate | D152A plus GDP-mannose | E100A (grown for 3 weeks) | E100A plus GDP-mannose (grown for 24 hrs) |
---|---|---|---|---|
Space group | C2221 | P212121 | P212121 | P21 |
Cell dimensions | a = 75.3 Å | a = 58.9 Å | a=60.3 | a=54.2 |
b = 103.2 Å | b = 69.3 Å | b=69.2 | b=55.8 | |
c = 254.5 Å | c = 99.6 Å | c=98.5 | c=158.1 | |
α=b=γ = 90° | α=b=γ = 90° | α=b=γ = 90° | α=γ = 90° | |
b=91.7 | ||||
Data Collection Statistics | ||||
Wavelength (Å) | 0.9809 | 1.54 | 0.9787 | |
Resolution(Å) | 30.0-2.5 | 50.0-2.03 | 50.0-2.1 | 50.0-2.45 |
(HighRes shell)a | (2.54-2.50) | (2.10-2.03) | (2.18-2.10) | (2.49-2.45) |
Measured Reflect. | 240,244 | 161,406 | 134,487 | 104,724 |
Unique Reflections | 33,433 | 26,521 | 23,871 | 32,636 |
I/σ | 28.6 (2.9) | 40.7 (6.4) | 30.1 (5.2) | 17.8 (4.4) |
Completeness (%) | 96.4 (80.7) | 98 (98.1) | 96 (75.1) | 93 (59.0) |
Rsym/Rmerge (%)b | 6.9 (34.4) | 7.7 (37.7) | 8.9 (33.1) | 9.8(16.5) |
Refinement | ||||
Rcryst (%) | 0.21 | 0.23 | 0.20 | 0.22 |
Rfree | 0.28 | 0.30 | 0.28 | 0.29 |
R.m.s deviations | ||||
Bond length (Å) | 0.015 | 0.014 | 0.011 | 0.014 |
Angle (°) | 1.5 | 1.4 | 1.3 | 1.6 |
Monomer in ASU | 5 | 2 | 2 | 4 |
Total Atoms | 7420 | 3343 | 3342 | 6246 |
Protein atoms | 7153 | 2987 | 2943 | 5971 |
Water molecules | 197 | 329 | 375 | 112 |
Ligand | Na+, Cl−, Tartrate | Mg2+, Cl−, PEG, Tris | Mg2+, PEG, Na+, Cl− | Mg2+, GDP-mannose, Na+, Cl− |
Bfactor (protein)Å2 | 44.4 | 33.2 | 24.0 | 46.2 |
Bfactor (ligand) Å2 | 65.1 | 49.5 | 42.7 | 52.7 |
Bfactor (H20) Å2 | 41.6 | 39.6 | 31.0 | 45.4 |
Ramachandran(MF, allowed) % c | 87.1, 100 | 88.4, 100 | 89.8, 99.4 | 88.6, 99.7 |
PDB Accession Code | 3O52 | 3O6Z | 3O69 | 3O61 |
Data in parentheses correspond to the outer resolution shell.
Rsym=ΣhklΣJ|Ij-<I>|/ΣhklΣJ Ij where <I> is the mean intensity of j observations from a reflection hkl and its symmetry equivalents.
MF=Percentage of residues in most favorable region allowed= Percentage of residues in allowed region