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. 1984 Feb 10;12(3):1577–1580. doi: 10.1093/nar/12.3.1577

The nucleotide sequence of the cytoplasmic 5S rRNA from the horsetail, Equisetum arvense.

N Ulbrich, M Digweed, V A Erdmann
PMCID: PMC318599  PMID: 6701089

Abstract

Using 3'- and 5'-end labelling sequencing techniques, the following sequence for the cytoplasmic 5S rRNA of the horsetail Equisetum arvense could be determined: (sequence in text). This sequence exhibits all features expected for higher plant cytoplasmic 5S rRNAs, and can be fitted to the secondary structure model for 5S rRNA proposed by De Wachter et al. (15).

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bowman C. M., Dyer T. A. 4.5S ribonucleic acid, a novel ribosome component in the chloroplasts of flowering plants. Biochem J. 1979 Dec 1;183(3):605–613. doi: 10.1042/bj1830605. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. De Wachter R., Chen M. W., Vandenberghe A. Conservation of secondary structure in 5 S ribosomal RNA: a uniform model for eukaryotic, eubacterial, archaebacterial and organelle sequences is energetically favourable. Biochimie. 1982 May;64(5):311–329. doi: 10.1016/s0300-9084(82)80436-7. [DOI] [PubMed] [Google Scholar]
  3. Delihas N., Andersen J. Generalized structures of the 5S ribosomal RNAs. Nucleic Acids Res. 1982 Nov 25;10(22):7323–7344. doi: 10.1093/nar/10.22.7323. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Delihas N., Andersen J., Sprouse H. M., Kashdan M., Dudock B. The nucleotide sequence of spinach cytoplasmic 5 S ribosomal RNA. J Biol Chem. 1981 Jul 25;256(14):7515–7517. [PubMed] [Google Scholar]
  5. Donis-Keller H., Maxam A. M., Gilbert W. Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res. 1977 Aug;4(8):2527–2538. doi: 10.1093/nar/4.8.2527. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. England T. E., Uhlenbeck O. C. 3'-terminal labelling of RNA with T4 RNA ligase. Nature. 1978 Oct 12;275(5680):560–561. doi: 10.1038/275560a0. [DOI] [PubMed] [Google Scholar]
  7. Forget B. G., Weissman S. M. Low molecular weight RNA components from KB cells. Nature. 1967 Mar 4;213(5079):878–882. doi: 10.1038/213878a0. [DOI] [PubMed] [Google Scholar]
  8. Hartley M. R. The synthesis and origin of chloroplast low-molecular-weight ribosomal ribonucleic acid in spinach. Eur J Biochem. 1979 May 15;96(2):311–320. doi: 10.1111/j.1432-1033.1979.tb13042.x. [DOI] [PubMed] [Google Scholar]
  9. Katoh K., Hori H., Osawa S. The nucleotide sequences of 5S ribosomal RNAs from four Bryophyta-species. Nucleic Acids Res. 1983 Aug 25;11(16):5671–5674. doi: 10.1093/nar/11.16.5671. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Lim B. L., Hori H., Osawa S. The nucleotide sequences of 5S rRNAs from a multicellular green alga, Ulva pertusa, and two brown algae, Eisenia bicyclis and Sargassum fulvellum. Nucleic Acids Res. 1983 Mar 25;11(6):1909–1912. doi: 10.1093/nar/11.6.1909. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Ninio J. Prediction of pairing schemes in RNA molecules-loop contributions and energy of wobble and non-wobble pairs. Biochimie. 1979;61(10):1133–1150. doi: 10.1016/s0300-9084(80)80227-6. [DOI] [PubMed] [Google Scholar]
  12. Peattie D. A. Direct chemical method for sequencing RNA. Proc Natl Acad Sci U S A. 1979 Apr;76(4):1760–1764. doi: 10.1073/pnas.76.4.1760. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Pene J. J., Knight E., Jr, Darnell J. E., Jr Characterization of a new low molecular weight RNA in HeLa cell ribosomes. J Mol Biol. 1968 May 14;33(3):609–623. doi: 10.1016/0022-2836(68)90309-4. [DOI] [PubMed] [Google Scholar]
  14. Silberklang M., Gillum A. M., RajBhandary U. L. Use of in vitro 32P labeling in the sequence analysis of nonradioactive tRNAs. Methods Enzymol. 1979;59:58–109. doi: 10.1016/0076-6879(79)59072-7. [DOI] [PubMed] [Google Scholar]
  15. Volckaert G., Fiers W. A micromethod for base analysis of 32P-labeled oligoribonulcleotides. Anal Biochem. 1977 Nov;83(1):222–227. doi: 10.1016/0003-2697(77)90530-9. [DOI] [PubMed] [Google Scholar]
  16. Weinberg R. A., Penman S. Small molecular weight monodisperse nuclear RNA. J Mol Biol. 1968 Dec;38(3):289–304. doi: 10.1016/0022-2836(68)90387-2. [DOI] [PubMed] [Google Scholar]
  17. Whitfeld P. R., Leaver C. J., Bottomley W., Atchison B. Low-molecular-weight (4.5S) ribonucleic acid in higher-plant chloroplast ribosomes. Biochem J. 1978 Dec 1;175(3):1103–1112. doi: 10.1042/bj1751103. [DOI] [PMC free article] [PubMed] [Google Scholar]

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