Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1984 Mar 12;12(5):2499–2508. doi: 10.1093/nar/12.5.2499

The modelling of the decoding site of the Escherichia coli ribosome.

T Sarapuu, E Ustav, R Villems
PMCID: PMC318679  PMID: 6369248

Abstract

Individual ribosomal proteins S4, S9 and S13 were tested for their ability to interact with tRNA and synthetic polynucleotides. All three proteins bind to immobilized to Sepharose poly(A) and poly(U), while S4 and S13 form stoichiometric (1:1) complexes with tRNA in solution. We show that only the polynucleotide X S13 complexes are able to select their cognate tRNAs. In particular, the affinity of tRNAPhe to the binary poly(U) X S13 complex is about three orders of magnitude higher than that for poly(U) alone.

Full text

PDF
2499

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Cantrell M., Craven G. R. Chemical inactivation of Escherichia coli 30 S ribosomes with maleic anhydride: identification of the proteins involved in polyuridylic acid binding. J Mol Biol. 1977 Sep 25;115(3):389–402. doi: 10.1016/0022-2836(77)90161-9. [DOI] [PubMed] [Google Scholar]
  2. Chang C., Craven G. R. Identification of several proteins involved in the messenger RNA binding site of the 30 S ribosome by inactivation with 2-methoxy-5-nitrotropone. J Mol Biol. 1977 Dec 5;117(2):401–418. doi: 10.1016/0022-2836(77)90135-8. [DOI] [PubMed] [Google Scholar]
  3. Dohme F., Fahnestock S. R. Identification of proteins involved in the peptidyl transferase activity of ribosomes by chemical modification. J Mol Biol. 1979 Mar 25;129(1):63–81. doi: 10.1016/0022-2836(79)90060-3. [DOI] [PubMed] [Google Scholar]
  4. Donis-Keller H., Maxam A. M., Gilbert W. Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res. 1977 Aug;4(8):2527–2538. doi: 10.1093/nar/4.8.2527. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Eisinger J., Feuer B., Yamane T. Luminescence and binding studies on tRNA-Phe. Proc Natl Acad Sci U S A. 1970 Mar;65(3):638–644. doi: 10.1073/pnas.65.3.638. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Girshovich A. S., Kurtskhalia T. V., Ovchinnikov YuA, Vasiliev V. D. Localization of the elongation factor G on Escherichia coli ribosome. FEBS Lett. 1981 Jul 20;130(1):54–59. doi: 10.1016/0014-5793(81)80664-3. [DOI] [PubMed] [Google Scholar]
  7. Hardy S. J., Kurland C. G., Voynow P., Mora G. The ribosomal proteins of Escherichia coli. I. Purification of the 30S ribosomal proteins. Biochemistry. 1969 Jul;8(7):2897–2905. doi: 10.1021/bi00835a031. [DOI] [PubMed] [Google Scholar]
  8. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  9. Lutter L. C., Kurland C. G., Stöffler G. Protein neighborhoods in the 30S ribosomal subunit of Escherichia coli. FEBS Lett. 1975 Jun 15;54(2):144–150. doi: 10.1016/0014-5793(75)80062-7. [DOI] [PubMed] [Google Scholar]
  10. Metspalu E., Maimets T., Ustav M., Villems R. A quaternary complex consisting of two molecules of tRNA and ribosomal proteins L2 and L17. FEBS Lett. 1981 Sep 14;132(1):105–108. doi: 10.1016/0014-5793(81)80438-3. [DOI] [PubMed] [Google Scholar]
  11. Metspalu E., Ustav M., Maimets T., Villems R. The composition and properties of the Escherichia coli 5-S RNA-protein complex. Eur J Biochem. 1982 Jan;121(2):383–389. doi: 10.1111/j.1432-1033.1982.tb05798.x. [DOI] [PubMed] [Google Scholar]
  12. Nierhaus K. H. The assembly of the prokaryotic ribosome. Biosystems. 1980;12(3-4):273–282. doi: 10.1016/0303-2647(80)90024-6. [DOI] [PubMed] [Google Scholar]
  13. Olson H. M., Grant P. G., Cooperman B. S., Glitz D. G. Immunoelectron microscopic localization of puromycin binding on the large subunit of the Escherichia coli ribosome. J Biol Chem. 1982 Mar 10;257(5):2649–2656. [PubMed] [Google Scholar]
  14. Sarapuu T., Villems R. Polynucleotide . ribosomal-protein complexes and their decoding properties. Eur J Biochem. 1982 May 17;124(2):275–281. doi: 10.1111/j.1432-1033.1982.tb06588.x. [DOI] [PubMed] [Google Scholar]
  15. Sarapuu T., Villems R. Selection of tRNA by different polynucleotide--ribosomal protein complexes. FEBS Lett. 1983 Feb 21;152(2):291–294. doi: 10.1016/0014-5793(83)80398-6. [DOI] [PubMed] [Google Scholar]
  16. Spierer P., Bogdanov A. A., Zimmermann R. A. Parameters for the interaction of ribosomal proteins L5, L18, and L25 with 5S RNA from Escherichia coli. Biochemistry. 1978 Dec 12;17(25):5394–5398. doi: 10.1021/bi00618a012. [DOI] [PubMed] [Google Scholar]
  17. Stanley W. M., Jr Specific aminoacylation of the methionine-specific tRNA's of eukaryotes. Methods Enzymol. 1974;29:530–547. doi: 10.1016/0076-6879(74)29049-9. [DOI] [PubMed] [Google Scholar]
  18. Ustav M., Saarma M., Lind A., Villems R. The domain for transfer ribonucleic acid binding to the Escherichia coli ribosome. FEBS Lett. 1978 Mar 15;87(2):315–317. doi: 10.1016/0014-5793(78)80359-7. [DOI] [PubMed] [Google Scholar]
  19. Ustav M., Villems R., Lind A. The interaction of transfer ribonucleic acid with 30 S ribosomal subunit proteins. FEBS Lett. 1977 Oct 15;82(2):259–262. doi: 10.1016/0014-5793(77)80597-8. [DOI] [PubMed] [Google Scholar]
  20. Wystup G., Teraoka H., Schulze H., Hampl H., Nierhaus K. H. 50-S subunit from Escherichia coli ribosomes. Isolation of active ribosomal proteins and protein complexes. Eur J Biochem. 1979 Oct;100(1):101–113. doi: 10.1111/j.1432-1033.1979.tb02038.x. [DOI] [PubMed] [Google Scholar]
  21. Yaniv M., Barrell B. G. Nucleotide sequence of E. coli B tRNA1-Val. Nature. 1969 Apr 19;222(5190):278–279. doi: 10.1038/222278a0. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES