Abstract
Laser Raman and circular dichroism spectra of filamentous bacteriophage Pf3 show that its coat protein is predominantly alpha-helical, similar to the subunits of bacteriophages Pf1 and fd. Unlike Pf1 and fd, however, the subunits of Pf3 are converted to beta-sheet structures by raising the temperature, the transition temperature depending upon phage and NaCl concentrations. On cooling, the beta structure reverts to an alpha structure the same as or similar to the native structure. On further heating it converts irreversibly to a second alpha-helical form different from the original one. The spectra also show that aromatic amino acid residues of Pf3 undergo dramatic changes in molecular environment during the alpha leads to beta transition. Similar transitions are observed to take place in the filamentous bacteriophage Xf.
Full text
PDF




Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Amako K., Yasunaka K. Ether induced morphological alteration of Pf-1 filamentous phage. Nature. 1977 Jun 30;267(5614):862–863. doi: 10.1038/267862a0. [DOI] [PubMed] [Google Scholar]
- Berkowitz S. A., Day L. A. Turbidity measurements in an analytical ultracentrifuge. Determinations of mass per length for filamentous viruses fd, Xf, and Pf3. Biochemistry. 1980 Jun 10;19(12):2696–2702. doi: 10.1021/bi00553a025. [DOI] [PubMed] [Google Scholar]
- Bradley D. E. Adsorption of bacteriophages specific for Pseudomonas aeruginosa R factors RP1 and R1822. Biochem Biophys Res Commun. 1974 Apr 8;57(3):893–900. doi: 10.1016/0006-291x(74)90630-5. [DOI] [PubMed] [Google Scholar]
- Chen M. C., Lord R. C. Laser-excited Raman spectroscopy of biomolecules. VI. Some polypeptides as conformational models. J Am Chem Soc. 1974 Jul 24;96(15):4750–4752. doi: 10.1021/ja00822a004. [DOI] [PubMed] [Google Scholar]
- Day L. A., Wiseman R. L., Marzec C. J. Structure models for DNA in filamentous viruses with phosphates near the center. Nucleic Acids Res. 1979 Nov 24;7(6):1393–1403. doi: 10.1093/nar/7.6.1393. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dunker A. K., Williams R. W., Peticolas W. L. Ultraviolet and laser Raman investigation of the buried tyrosines in fd phage. J Biol Chem. 1979 Jul 25;254(14):6444–6448. [PubMed] [Google Scholar]
- Erfurth S. C., Kiser E. J., Peticolas W. L. Determination of the backbone structure of nucleic acids and nucleic acid oligomers by laser Raman scattering. Proc Natl Acad Sci U S A. 1972 Apr;69(4):938–941. doi: 10.1073/pnas.69.4.938. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lafleur L., Rice J., Thomas G. J., Jr Raman studies of nucleic acids. VII. Poly A-poly U and poly G-poly C. Biopolymers. 1972;11(12):2423–2437. doi: 10.1002/bip.1972.360111205. [DOI] [PubMed] [Google Scholar]
- Lippert J. L., Tyminski D., Desmeules P. J. Determination of the secondary structure of proteins by laser Raman spectroscopy. J Am Chem Soc. 1976 Oct 27;98(22):7075–7080. doi: 10.1021/ja00438a057. [DOI] [PubMed] [Google Scholar]
- Makowski L., Caspar D. L., Marvin D. A. Filamentous bacteriophage Pf1 structure determined at 7A resolution by refinement of models for the alpha-helical subunit. J Mol Biol. 1980 Jun 25;140(2):149–181. doi: 10.1016/0022-2836(80)90101-1. [DOI] [PubMed] [Google Scholar]
- Marvin D. A., Wiseman R. L., Wachtel E. J. Filamentous bacterial viruses. XI. Molecular architecture of the class II (Pf1, Xf) virion. J Mol Biol. 1974 Jan 15;82(2):121–138. doi: 10.1016/0022-2836(74)90336-2. [DOI] [PubMed] [Google Scholar]
- Nave C., Fowler A. G., Malsey S., Marvin D. A., Siegrist H., Wachtel E. J. Macromolecular structural transitions in Pf1 filamentous bacterial virus. Nature. 1979 Sep 20;281(5728):232–234. doi: 10.1038/281232a0. [DOI] [PubMed] [Google Scholar]
- Nozaki Y., Chamberlain B. K., Webster R. E., Tanford C. Evidence for a major conformational change of coat protein in assembly of fl bacteriophage. Nature. 1976 Jan 29;259(5541):335–337. doi: 10.1038/259335a0. [DOI] [PubMed] [Google Scholar]
- Opella S. J., Cross T. A., DiVerdi J. A., Sturm C. F. Nuclear magnetic resonance of the filamentous bacteriophage fd. Biophys J. 1980 Oct;32(1):531–548. doi: 10.1016/S0006-3495(80)84988-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Siamwiza M. N., Lord R. C., Chen M. C., Takamatsu T., Harada I., Matsuura H., Shimanouchi T. Interpretation of the doublet at 850 and 830 cm-1 in the Raman spectra of tyrosyl residues in proteins and certain model compounds. Biochemistry. 1975 Nov 4;14(22):4870–4876. doi: 10.1021/bi00693a014. [DOI] [PubMed] [Google Scholar]
- Stanisich V. A. The properties and host range of male-specific bacteriophages of Pseudomonas aeruginosa. J Gen Microbiol. 1974 Oct;84(2):332–342. doi: 10.1099/00221287-84-2-332. [DOI] [PubMed] [Google Scholar]
- Thomas G. J., Jr, Hartman K. A. Raman studies of nucleic acids. 8. Estimation of RNA secondary structure from Raman scattering by phosphate-group vibrations. Biochim Biophys Acta. 1973 Jun 23;312(2):311–332. doi: 10.1016/0005-2787(73)90376-6. [DOI] [PubMed] [Google Scholar]
- Thomas G., Jr, Murphy P. Structure of coat proteins in Pf1 and fd virions by laser raman spectroscopy. Science. 1975 Jun 20;188(4194):1205–1207. doi: 10.1126/science.1170637. [DOI] [PubMed] [Google Scholar]
- Wickner W., Ito K., Mandel G., Bates M., Nokelainen M., Zwizinski C. The three lives of M13 coat protein: a virion capsid, an integral membrane protein, and a soluble cytoplasmic proprotein. Ann N Y Acad Sci. 1980;343:384–390. doi: 10.1111/j.1749-6632.1980.tb47267.x. [DOI] [PubMed] [Google Scholar]
- Williams R. W., Dunker A. K. Circular dichroism studies of fd coat protein in membrane vesicles. J Biol Chem. 1977 Sep 25;252(18):6253–6255. [PubMed] [Google Scholar]
- Williams R. W., Dunker A. K., Peticolas W. L. A NEW METHOD FOR DETERMINING PROTEIN SECONDARY STRUCTURE BY LASER RAMAN SPECTROSCOPY APPLIED TO fd PHAGE. Biophys J. 1980 Oct;32(1):232–234. doi: 10.1016/S0006-3495(80)84944-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yu T. J., Lippert J. L., Peticolas W. L. Laser Raman studies of conformational variations of poly-L-lysine. Biopolymers. 1973;12(9):2161–2175. doi: 10.1002/bip.1973.360120919. [DOI] [PubMed] [Google Scholar]
