Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1981 Jul;78(7):4107–4111. doi: 10.1073/pnas.78.7.4107

Initiation of DNA replication at the primary origin of bacteriophage T7 by purified proteins: requirement for T7 RNA polymerase.

L J Romano, F Tamanoi, C C Richardson
PMCID: PMC319735  PMID: 6945573

Abstract

The primary origin of bacteriophage T7 DNA replication is located 15% of the distance from the left end of the T7 DNA molecule. This intergenic segment is A + T-rich, contains a single gene 4 protein recognition site, and is preceded by two tandem promoters for T7 RNA polymerase [RNA nucleotidyltransferase (DNA-directed), EC 2.7.7.6]. Analysis by electron microscopy shows that T7 DNA polymerase [DNA nucleotidyltransferase (DNA-directed), EC 2.7.7.7] and gene 4 protein initiate DNA synthesis at randomly located nicks on duplex DNA to produce branched molecules. However, upon the addition of T7 RNA polymerase and ribonucleoside triphosphates 14% of the product molecules have replication bubbles, all of which are located near the primary origin observed in vivo; no such initiation occurs on T7 deletion mutant LG37 DNA, which lacks the primary origin. We have also studied initiation by using plasmids into which fragments of T7 DNA have been inserted. DNA synthesis on these templates is also dependent on the presence of T7 RNA polymerase and ribonucleoside triphosphates. DNA synthesis is specific for plasmids containing the primary origin, provided they are first converted to linear forms.

Full text

PDF

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Adler S., Modrich P. T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits. J Biol Chem. 1979 Nov 25;254(22):11605–11614. [PubMed] [Google Scholar]
  2. Campbell J. L., Richardson C. C., Studier F. W. Genetic recombination and complementation between bacteriophage T7 and cloned fragments of T7 DNA. Proc Natl Acad Sci U S A. 1978 May;75(5):2276–2280. doi: 10.1073/pnas.75.5.2276. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Campbell J. L., Tamanoi F., Richardson C. C., Studier F. W. Cloning of the T7 genome in Escherichia coli: use of recombination between cloned sequences and bacteriophage T7 to identify genes involved in recombination and a clone containing the origin of T7 DNA replication. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 1):441–448. doi: 10.1101/sqb.1979.043.01.050. [DOI] [PubMed] [Google Scholar]
  4. Dressler D., Wolfson J., Magazin M. Initiation and reinitiation of DNA synthesis during replication of bacteriophage T7. Proc Natl Acad Sci U S A. 1972 Apr;69(4):998–1002. doi: 10.1073/pnas.69.4.998. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Dunn J. J., Studier F. W. Nucleotide sequence from the genetic left end of bacteriophage T7 DNA to the beginning of gene 4. J Mol Biol. 1981 Jun 5;148(4):303–330. doi: 10.1016/0022-2836(81)90178-9. [DOI] [PubMed] [Google Scholar]
  6. Fischer H., Hinkle D. C. Bacteriophage T7 DNA replication in vitro. Stimulation of DNA synthesis by T7 RNA polymerase. J Biol Chem. 1980 Aug 25;255(16):7956–7964. [PubMed] [Google Scholar]
  7. Hillenbrand G., Morelli G., Lanka E., Scherzinger E. Bacteriophage T7 DNA primase: a multifunctional enzyme involved in DNA replication. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 1):449–459. doi: 10.1101/sqb.1979.043.01.051. [DOI] [PubMed] [Google Scholar]
  8. Hinkle D. C. Evidence for direct involvement of T7 RNA polymerase bacteriophage DNA replication. J Virol. 1980 Apr;34(1):136–141. doi: 10.1128/jvi.34.1.136-141.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Hinkle D. C., Richardson C. C. Bacteriophage T7 deoxyribonucleic acid replication in vitro. Requirements for deoxyribonucleic acid synthesis and characterization of the product. J Biol Chem. 1974 May 10;249(9):2974–2980. [PubMed] [Google Scholar]
  10. Itoh T., Tomizawa J. Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease H. Proc Natl Acad Sci U S A. 1980 May;77(5):2450–2454. doi: 10.1073/pnas.77.5.2450. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Kolodner R., Masamune Y., LeClerc J. E., Richardson C. C. Gene 4 protein of bacteriophage T7. Purification physical properties, and stimulation of T7 DNA polymerase during the elongation of polynucleotide chains. J Biol Chem. 1978 Jan 25;253(2):566–573. [PubMed] [Google Scholar]
  12. Kolodner R., Richardson C. C. Gene 4 protein of bacteriophage T7. Characterization of the product synthesized by the T7 DNA polymerase and gene 4 protein in the absence of ribonucleoside 5'-triphosphates. J Biol Chem. 1978 Jan 25;253(2):574–584. [PubMed] [Google Scholar]
  13. Kolodner R., Richardson C. C. Replication of duplex DNA by bacteriophage T7 DNA polymerase and gene 4 protein is accompanied by hydrolysis of nucleoside 5'-triphosphates. Proc Natl Acad Sci U S A. 1977 Apr;74(4):1525–1529. doi: 10.1073/pnas.74.4.1525. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Panayotatos N., Wells R. D. Cloning and localization of the in vitro functional origin of replication of bacteriophage T7 DNA. J Biol Chem. 1979 Jun 25;254(12):5555–5561. [PubMed] [Google Scholar]
  15. Richardson C. C., Romano L. J., Kolodner R., LeClerc J. E., Tamanoi F., Engler M. J., Dean F. B., Richardson D. S. Replication of bacteriophage T7 DNA by purified proteins. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 1):427–440. doi: 10.1101/sqb.1979.043.01.049. [DOI] [PubMed] [Google Scholar]
  16. Richardson C. C. The 5'-terminal nucleotides of T7 bacteriophage deoxyribonucleic acid. J Mol Biol. 1966 Jan;15(1):49–61. doi: 10.1016/s0022-2836(66)80208-5. [DOI] [PubMed] [Google Scholar]
  17. Romano L. J., Richardson C. C. Characterization of the ribonucleic acid primers and the deoxyribonucleic acid product synthesized by the DNA polymerase and gene 4 protein of bacteriophage T7. J Biol Chem. 1979 Oct 25;254(20):10483–10489. [PubMed] [Google Scholar]
  18. Romano L. J., Richardson C. C. Requirements for synthesis of ribonucleic acid primers during lagging strand synthesis by the DNA polymerase and gene 4 protein of bacteriophage T7. J Biol Chem. 1979 Oct 25;254(20):10476–10482. [PubMed] [Google Scholar]
  19. Saito H., Richardson C. C. Genetic analysis of gene 1.2 of bacteriophage T7: isolation of a mutant of Escherichia coli unable to support the growth of T7 gene 1.2 mutants. J Virol. 1981 Jan;37(1):343–351. doi: 10.1128/jvi.37.1.343-351.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Saito H., Tabor S., Tamanoi F., Richardson C. C. Nucleotide sequence of the primary origin of bacteriophage T7 DNA replication: relationship to adjacent genes and regulatory elements. Proc Natl Acad Sci U S A. 1980 Jul;77(7):3917–3921. doi: 10.1073/pnas.77.7.3917. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Scherzinger E., Klotz G. Studies on bacteriophage T7 DNA synthesis in vitro. II. Reconstitution of the T7 replication system using purified proteins. Mol Gen Genet. 1975 Dec 1;141(3):233–249. doi: 10.1007/BF00341802. [DOI] [PubMed] [Google Scholar]
  22. Scherzinger E., Lanka E., Hillenbrand G. Role of bacteriophage T7 DNA primase in the initiation of DNA strand synthesis. Nucleic Acids Res. 1977 Dec;4(12):4151–4163. doi: 10.1093/nar/4.12.4151. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Scherzinger E., Lanka E., Morelli G., Seiffert D., Yuki A. Bacteriophage-T7-induced DNA-priming protein. A novel enzyme involved in DNA replication. Eur J Biochem. 1977 Feb;72(3):543–558. doi: 10.1111/j.1432-1033.1977.tb11278.x. [DOI] [PubMed] [Google Scholar]
  24. Scherzinger E., Lauppe H. F., Voll N., Wanke M. Recombinant plasmids carrying promoters, genes and the origin of DNA replication of the early region of bacteriophage T7. Nucleic Acids Res. 1980 Mar 25;8(6):1287–1305. doi: 10.1093/nar/8.6.1287. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  26. Studier F. W. The genetics and physiology of bacteriophage T7. Virology. 1969 Nov;39(3):562–574. doi: 10.1016/0042-6822(69)90104-4. [DOI] [PubMed] [Google Scholar]
  27. Tabor S., Richardson C. C. Template recognition sequence for RNA primer synthesis by gene 4 protein of bacteriophage T7. Proc Natl Acad Sci U S A. 1981 Jan;78(1):205–209. doi: 10.1073/pnas.78.1.205. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Tamanoi F., Saito H., Richardson C. C. Physical mapping of primary and secondary origins of bacteriophage T7 DNA replication. Proc Natl Acad Sci U S A. 1980 May;77(5):2656–2660. doi: 10.1073/pnas.77.5.2656. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Tomizawa J., Selzer G. Initiation of DNA synthesis in Escherichia coli. Annu Rev Biochem. 1979;48:999–1034. doi: 10.1146/annurev.bi.48.070179.005031. [DOI] [PubMed] [Google Scholar]
  30. Weiner J. H., Bertsch L. L., Kornberg A. The deoxyribonucleic acid unwinding protein of Escherichia coli. Properties and functions in replication. J Biol Chem. 1975 Mar 25;250(6):1972–1980. [PubMed] [Google Scholar]
  31. Wever G. H., Fischer H., Hinkle D. C. Bacteriophage T7 DNA replication in vitro. Electron micrographic analysis of T7 DNA synthesized with purified proteins. J Biol Chem. 1980 Aug 25;255(16):7965–7972. [PubMed] [Google Scholar]
  32. Wolfson J., Dressler D., Magazin M. Bacteriophage T7 DNA replication: a linear replicating intermediate (gradient centrifugation-electron microscopy-E. coli-DNA partial denaturation). Proc Natl Acad Sci U S A. 1972 Feb;69(2):499–504. doi: 10.1073/pnas.69.2.499. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Wolfson J., Dressler D. Regions of single-stranded DNA in the growing points of replicating bacteriophage T7 chromosomes. Proc Natl Acad Sci U S A. 1972 Sep;69(9):2682–2686. doi: 10.1073/pnas.69.9.2682. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Yang H. L., Heller K., Gellert M., Zubay G. Differential sensitivity of gene expression in vitro to inhibitors of DNA gyrase. Proc Natl Acad Sci U S A. 1979 Jul;76(7):3304–3308. doi: 10.1073/pnas.76.7.3304. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES