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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 2;67(Pt 9):o2226–o2227. doi: 10.1107/S1600536811030467

9-Hy­droxy-4,8-dimethyl-12-(pyrrolidin-1-ylmeth­yl)-3,14-dioxatricyclo­[9.3.0.02,4]tetra­dec-7-en-13-one

Mohamed Moumou a,*, Ahmed Benharref a, Daniel Avignant b, Abdelghani Oudahmane b, Mohamed Akssira c, Moha Berraho a
PMCID: PMC3200593  PMID: 22065010

Abstract

The title compound, C19H29O4, was synthesized from 9α-hy­droxy­parthenolide (9α-hy­droxy-4,8-dimethyl-12-methylen-3,14-dioxatricyclo­[9.3.0.02,4]tetra­dec-7-en-13-one), which was isolated from the chloro­form extract of the aerial parts of Anvillea radiata. The mol­ecule is built up from two fused five- and ten-membered rings with the pyrrolidin-1-ylmethyl group as a substituent. The five-membered lactone ring has an envelope conformation, whereas the ten-membered and pyrrolidine rings display approximate chair–chair and twisted conformations, respectively. The dihedral angle between the ten-membered ring and the lactone ring is 18.01 (19)°. An intra­molecular O—H⋯N hydrogen bond occurs. The crystal structure is stabilized by weak inter­molecular C—H⋯O hydrogen-bonding inter­actions.

Related literature

For the isolation and biological activity of 9α-hy­droxy­parthenolide, see: Abdel Sattar et al. (1996); El Hassany et al. (2004). For the reactivity of this sesquiterpene, see: Castaneda-Acosta et al. (1993); Neukirch et al. (2003); Der-Ren et al. (2006); Neelakantan et al. (2009). For conformational analysis, see: Cremer & Pople (1975)graphic file with name e-67-o2226-scheme1.jpg

Experimental

Crystal data

  • C19H29NO4

  • M r = 335.43

  • Orthorhombic, Inline graphic

  • a = 8.1389 (6) Å

  • b = 10.1788 (7) Å

  • c = 21.7669 (15) Å

  • V = 1803.3 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 298 K

  • 0.30 × 0.27 × 0.18 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2008) T min = 0.634, T max = 0.746

  • 7656 measured reflections

  • 2110 independent reflections

  • 1220 reflections with I > 2σ(I)

  • R int = 0.053

Refinement

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.121

  • S = 0.99

  • 2110 reflections

  • 222 parameters

  • H-atom parameters constrained

  • Δρmax = 0.15 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2 and SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030467/zl2390sup1.cif

e-67-o2226-sup1.cif (26KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030467/zl2390Isup2.hkl

e-67-o2226-Isup2.hkl (101.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811030467/zl2390Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O4—H4⋯N 0.82 2.17 2.964 (4) 164
C1—H1⋯O4i 0.98 2.57 3.533 (4) 167
C11—H11⋯O1ii 0.98 2.50 3.403 (4) 154

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the Unit of Support for Technical and Scientific Research (UATRS, CNRST) for the X-ray measurements.

supplementary crystallographic information

Comment

The natural sesquiterpene lactone 9α-hydroxypartenolide is the main constituent of the chloroform extract of the aerial parts of Anvillea radiata (El Hassany et al., 2004) and of Anvillea garcini (Abdel Sattar et al., 1996). The reactivity of this sesquiterpene lactone and its derivatives has been the subject of several studies (Castaneda-Acosta et al., 1993; Neukirch et al., 2003; Der-Ren et al., 2006; Neelakantan et al., 2009), with the aim to prepare products with a high added value that can be used in the pharmacological industry. In the same context, we have treated 9α-hydroxyparthenolide with one equivalent of pyrrolidine and obtained 9-hydroxy-4,8-dimethyl-12-pyrrolidin-1-ylmethyl-3, 14-dioxatricyclo[9.3.0.02,4] tetradec -7-en-13-one with a good yield of 84%. The structure of this new derivative of 9α-hydroxypartenolide was determined by its single-crystal X-ray structure. The molecule contains two fused rings which exhibit different conformations with a pyrrolidine ring as a substituent to the lactone ring. The molecular structure of the title compound, Fig.1, shows the lactone ring to adopt an envelope conformation, as indicated by Cremer & Pople (1975) puckering parameters QT = 0.291 (4) Å and φ2 = 78.1 (7)°. The ten-membered ring displays an approximate chair-chair conformation, while the pyrrolidine ring has a twisted conformation with QT = 0.377 (4) Å, φ2 = 15.0 (8)°. In the crystal structure, molecules are connected through C—H···O hydrogen bonds, forming chains running along the b axis. (Fig.2). In addition an intramolecular O—H···N hydrogen bond is also observed.

Experimental

A mixture of 9α-hydoxypartenolide (300 mg, 1.13 mmol) and one equivalent of pyrrolidine in EtOH (20 ml) was stirred for one night at room temperature. The next day the reaction was stopped by adding 10 ml of water and extracted three times with ethyl acetate (3 × 20 ml). The combined organic layers were dried over anhydrous sodium sulfate, filtered and concentrated under vacuum to give 315 mg (0.94 mmol, 84%) of 9-hydroxy-4,8-dimethyl-12-pyrrolidin- 1-ylmethyl-3,14-dioxatricyclo[9.3.0.02,4]tetradec-7-en-13-one. The title compound was recrystallized in ethyl acetate.

Refinement

Reflections (1 0 2), (1 0 1), (1 1 0), (0 1 3), (0 1 1), (0 1 2) and (1 1 2) were obstructed by the beam stop and were omitted from the refinement. All H atoms were fixed geometrically and treated as riding with C—H = 0.96 Å (methyl), 0.97 Å (methylene), 0.98 Å (methine) and O–H = 0.82 Å with Uiso(H) = 1.2Ueq (methylene, methine) or Uiso(H) = 1.5Ueq (methyl, OH). In the absence of significant anomalous scattering, the absolute configuration could not be reliably determined and thus 1554 Friedel pairs were merged and any references to the Flack parameter were removed. The choice of enantiomer is assigned arbitrarily.

Figures

Fig. 1.

Fig. 1.

: Molecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

: Packing view showing the C–H···O and O–H···N hydrogen bonds as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity.

Crystal data

C19H29NO4 F(000) = 728
Mr = 335.43 Dx = 1.236 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 7656 reflections
a = 8.1389 (6) Å θ = 3.7–26.4°
b = 10.1788 (7) Å µ = 0.09 mm1
c = 21.7669 (15) Å T = 298 K
V = 1803.3 (2) Å3 PRISM, colourless
Z = 4 0.30 × 0.27 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 2110 independent reflections
Radiation source: fine-focus sealed tube 1220 reflections with I > 2σ(I)
graphite Rint = 0.053
Detector resolution: 8.3333 pixels mm-1 θmax = 26.4°, θmin = 4.0°
φ and ω scans h = −10→9
Absorption correction: multi-scan (SADABS; Bruker, 2008) k = −10→12
Tmin = 0.634, Tmax = 0.746 l = −16→27
7656 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045 H-atom parameters constrained
wR(F2) = 0.121 w = 1/[σ2(Fo2) + (0.0601P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99 (Δ/σ)max < 0.001
2110 reflections Δρmax = 0.15 e Å3
222 parameters Δρmin = −0.15 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.017 (3)

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.2577 (4) 1.0264 (3) 0.09346 (16) 0.0496 (9)
H1 0.2982 1.1080 0.0749 0.059*
C3 0.1673 (5) 1.0469 (4) 0.15028 (16) 0.0548 (10)
C4 0.1500 (5) 1.1871 (4) 0.16990 (18) 0.0673 (11)
H4A 0.2481 1.2346 0.1578 0.081*
H4B 0.1430 1.1901 0.2144 0.081*
C5 −0.0026 (5) 1.2584 (4) 0.14249 (19) 0.0694 (12)
H5A −0.0984 1.2386 0.1674 0.083*
H5B 0.0151 1.3526 0.1438 0.083*
C6 −0.0347 (5) 1.2170 (3) 0.07708 (16) 0.0508 (10)
H6 0.0391 1.2462 0.0475 0.061*
C7 −0.1572 (4) 1.1435 (3) 0.05791 (15) 0.0427 (8)
C8 −0.1582 (4) 1.0771 (3) −0.00454 (15) 0.0462 (9)
H8 −0.2722 1.0556 −0.0150 0.055*
C9 −0.0599 (4) 0.9476 (3) −0.00085 (16) 0.0441 (8)
H9A −0.0842 0.9051 0.0380 0.053*
H9B −0.0968 0.8897 −0.0334 0.053*
C10 0.1272 (4) 0.9652 (3) −0.00631 (15) 0.0428 (8)
H10 0.1484 1.0592 −0.0118 0.051*
C11 0.2305 (4) 0.9192 (3) 0.04834 (16) 0.0469 (9)
H11 0.1811 0.8422 0.0680 0.056*
C12 0.3823 (5) 0.8774 (3) −0.0393 (2) 0.0580 (10)
C13 0.2083 (4) 0.8935 (3) −0.05999 (17) 0.0519 (10)
H13 0.1584 0.8063 −0.0639 0.062*
C14 0.1989 (5) 0.9619 (4) −0.12159 (17) 0.0604 (11)
H14A 0.2482 1.0483 −0.1177 0.072*
H14B 0.2635 0.9126 −0.1511 0.072*
C15 −0.0436 (6) 0.8528 (4) −0.1647 (2) 0.0802 (14)
H15A −0.0827 0.8038 −0.1293 0.096*
H15B 0.0333 0.7987 −0.1874 0.096*
C16 −0.1830 (7) 0.8946 (5) −0.2044 (3) 0.1017 (17)
H16A −0.2811 0.9096 −0.1801 0.122*
H16B −0.2067 0.8285 −0.2353 0.122*
C17 −0.1246 (6) 1.0221 (5) −0.23440 (19) 0.0808 (14)
H17A −0.1037 1.0089 −0.2778 0.097*
H17B −0.2065 1.0907 −0.2298 0.097*
C18 0.0303 (6) 1.0581 (4) −0.20152 (16) 0.0690 (12)
H18A 0.1253 1.0398 −0.2270 0.083*
H18B 0.0303 1.1507 −0.1910 0.083*
C19 0.0421 (5) 0.9509 (4) 0.17490 (18) 0.0735 (13)
H19A 0.0628 0.8653 0.1581 0.110*
H19B −0.0662 0.9791 0.1634 0.110*
H19C 0.0499 0.9474 0.2189 0.110*
C20 −0.3045 (5) 1.1034 (4) 0.09593 (18) 0.0682 (12)
H20A −0.2922 1.1361 0.1370 0.102*
H20B −0.3124 1.0093 0.0969 0.102*
H20C −0.4025 1.1393 0.0780 0.102*
N 0.0336 (4) 0.9768 (3) −0.14550 (13) 0.0539 (8)
O1 0.5035 (4) 0.8578 (3) −0.06984 (15) 0.0824 (9)
O2 0.3922 (3) 0.8876 (2) 0.02235 (13) 0.0600 (7)
O3 0.3332 (3) 0.9963 (3) 0.15201 (12) 0.0662 (8)
O4 −0.0948 (3) 1.1599 (2) −0.05115 (11) 0.0544 (7)
H4 −0.0741 1.1161 −0.0818 0.060 (13)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.040 (2) 0.055 (2) 0.054 (2) −0.0002 (18) −0.0123 (19) 0.0075 (18)
C3 0.046 (2) 0.071 (3) 0.047 (2) 0.004 (2) −0.0050 (19) 0.011 (2)
C4 0.059 (3) 0.088 (3) 0.055 (2) 0.000 (2) −0.009 (2) −0.010 (2)
C5 0.072 (3) 0.070 (3) 0.066 (3) 0.007 (2) −0.003 (3) −0.012 (2)
C6 0.050 (2) 0.049 (2) 0.053 (2) 0.0035 (18) −0.001 (2) −0.0002 (17)
C7 0.0356 (19) 0.0471 (19) 0.0454 (19) 0.0053 (16) 0.0035 (18) 0.0030 (17)
C8 0.038 (2) 0.054 (2) 0.046 (2) −0.0014 (15) −0.0027 (18) 0.0111 (18)
C9 0.043 (2) 0.0413 (18) 0.0484 (19) −0.0034 (15) −0.0035 (17) 0.0050 (17)
C10 0.041 (2) 0.0349 (17) 0.052 (2) 0.0005 (15) −0.0019 (18) 0.0044 (16)
C11 0.038 (2) 0.0424 (19) 0.060 (2) 0.0016 (15) −0.0031 (19) 0.0104 (17)
C12 0.055 (3) 0.041 (2) 0.078 (3) 0.0097 (19) 0.009 (3) −0.0028 (19)
C13 0.051 (2) 0.0458 (19) 0.059 (2) −0.0019 (17) 0.008 (2) −0.0038 (18)
C14 0.062 (3) 0.064 (2) 0.056 (2) 0.004 (2) 0.012 (2) −0.007 (2)
C15 0.106 (4) 0.065 (3) 0.069 (3) −0.026 (3) −0.011 (3) −0.011 (2)
C16 0.111 (4) 0.109 (4) 0.085 (3) −0.026 (4) −0.022 (3) −0.012 (3)
C17 0.091 (4) 0.093 (3) 0.059 (2) 0.003 (3) −0.012 (3) −0.012 (2)
C18 0.083 (3) 0.079 (3) 0.045 (2) −0.009 (3) 0.006 (2) 0.004 (2)
C19 0.067 (3) 0.089 (3) 0.065 (2) −0.011 (3) 0.002 (2) 0.026 (2)
C20 0.046 (2) 0.095 (3) 0.064 (2) −0.002 (2) 0.008 (2) 0.001 (2)
N 0.062 (2) 0.0553 (18) 0.0444 (16) −0.0090 (16) 0.0040 (16) −0.0051 (15)
O1 0.068 (2) 0.0735 (19) 0.106 (2) 0.0188 (16) 0.0221 (19) −0.0043 (18)
O2 0.0461 (16) 0.0548 (15) 0.0791 (19) 0.0125 (13) −0.0057 (14) 0.0001 (13)
O3 0.0478 (16) 0.0875 (19) 0.0634 (16) 0.0074 (14) −0.0176 (14) 0.0097 (14)
O4 0.0635 (17) 0.0531 (14) 0.0466 (14) 0.0046 (14) 0.0035 (14) 0.0102 (13)

Geometric parameters (Å, °)

C1—O3 1.448 (4) C12—O1 1.206 (4)
C1—C3 1.454 (5) C12—O2 1.349 (5)
C1—C11 1.485 (5) C12—C13 1.495 (5)
C1—H1 0.9800 C13—C14 1.513 (5)
C3—O3 1.446 (4) C13—H13 0.9800
C3—C4 1.496 (5) C14—N 1.450 (4)
C3—C19 1.510 (5) C14—H14A 0.9700
C4—C5 1.558 (5) C14—H14B 0.9700
C4—H4A 0.9700 C15—N 1.470 (5)
C4—H4B 0.9700 C15—C16 1.489 (6)
C5—C6 1.508 (5) C15—H15A 0.9700
C5—H5A 0.9700 C15—H15B 0.9700
C5—H5B 0.9700 C16—C17 1.529 (6)
C6—C7 1.315 (4) C16—H16A 0.9700
C6—H6 0.9300 C16—H16B 0.9700
C7—C20 1.513 (5) C17—C18 1.495 (6)
C7—C8 1.518 (5) C17—H17A 0.9700
C8—O4 1.417 (4) C17—H17B 0.9700
C8—C9 1.544 (5) C18—N 1.474 (5)
C8—H8 0.9800 C18—H18A 0.9700
C9—C10 1.538 (4) C18—H18B 0.9700
C9—H9A 0.9700 C19—H19A 0.9600
C9—H9B 0.9700 C19—H19B 0.9600
C10—C13 1.528 (5) C19—H19C 0.9600
C10—C11 1.530 (4) C20—H20A 0.9600
C10—H10 0.9800 C20—H20B 0.9600
C11—O2 1.468 (4) C20—H20C 0.9600
C11—H11 0.9800 O4—H4 0.8200
O3—C1—C3 59.8 (2) O2—C12—C13 110.3 (3)
O3—C1—C11 119.3 (3) C12—C13—C14 111.4 (3)
C3—C1—C11 126.3 (3) C12—C13—C10 103.4 (3)
O3—C1—H1 113.6 C14—C13—C10 115.8 (3)
C3—C1—H1 113.6 C12—C13—H13 108.6
C11—C1—H1 113.6 C14—C13—H13 108.6
O3—C3—C1 59.9 (2) C10—C13—H13 108.6
O3—C3—C4 114.9 (3) N—C14—C13 114.4 (3)
C1—C3—C4 115.3 (3) N—C14—H14A 108.7
O3—C3—C19 113.0 (3) C13—C14—H14A 108.7
C1—C3—C19 123.4 (4) N—C14—H14B 108.7
C4—C3—C19 116.9 (4) C13—C14—H14B 108.7
C3—C4—C5 114.2 (3) H14A—C14—H14B 107.6
C3—C4—H4A 108.7 N—C15—C16 104.2 (4)
C5—C4—H4A 108.7 N—C15—H15A 110.9
C3—C4—H4B 108.7 C16—C15—H15A 110.9
C5—C4—H4B 108.7 N—C15—H15B 110.9
H4A—C4—H4B 107.6 C16—C15—H15B 110.9
C6—C5—C4 111.7 (3) H15A—C15—H15B 108.9
C6—C5—H5A 109.3 C15—C16—C17 104.7 (4)
C4—C5—H5A 109.3 C15—C16—H16A 110.8
C6—C5—H5B 109.3 C17—C16—H16A 110.8
C4—C5—H5B 109.3 C15—C16—H16B 110.8
H5A—C5—H5B 107.9 C17—C16—H16B 110.8
C7—C6—C5 126.2 (4) H16A—C16—H16B 108.9
C7—C6—H6 116.9 C18—C17—C16 105.4 (4)
C5—C6—H6 116.9 C18—C17—H17A 110.7
C6—C7—C20 125.5 (3) C16—C17—H17A 110.7
C6—C7—C8 122.8 (3) C18—C17—H17B 110.7
C20—C7—C8 111.4 (3) C16—C17—H17B 110.7
O4—C8—C7 112.0 (3) H17A—C17—H17B 108.8
O4—C8—C9 110.9 (3) N—C18—C17 105.9 (3)
C7—C8—C9 109.3 (3) N—C18—H18A 110.6
O4—C8—H8 108.2 C17—C18—H18A 110.6
C7—C8—H8 108.2 N—C18—H18B 110.6
C9—C8—H8 108.2 C17—C18—H18B 110.6
C10—C9—C8 114.2 (3) H18A—C18—H18B 108.7
C10—C9—H9A 108.7 C3—C19—H19A 109.5
C8—C9—H9A 108.7 C3—C19—H19B 109.5
C10—C9—H9B 108.7 H19A—C19—H19B 109.5
C8—C9—H9B 108.7 C3—C19—H19C 109.5
H9A—C9—H9B 107.6 H19A—C19—H19C 109.5
C13—C10—C11 102.2 (3) H19B—C19—H19C 109.5
C13—C10—C9 115.6 (3) C7—C20—H20A 109.5
C11—C10—C9 116.6 (3) C7—C20—H20B 109.5
C13—C10—H10 107.3 H20A—C20—H20B 109.5
C11—C10—H10 107.3 C7—C20—H20C 109.5
C9—C10—H10 107.3 H20A—C20—H20C 109.5
O2—C11—C1 106.4 (3) H20B—C20—H20C 109.5
O2—C11—C10 105.1 (3) C14—N—C15 114.1 (3)
C1—C11—C10 111.8 (3) C14—N—C18 111.9 (3)
O2—C11—H11 111.1 C15—N—C18 103.8 (3)
C1—C11—H11 111.1 C12—O2—C11 110.3 (3)
C10—C11—H11 111.1 C3—O3—C1 60.3 (2)
O1—C12—O2 120.8 (4) C8—O4—H4 109.5
O1—C12—C13 128.9 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O4—H4···N 0.82 2.17 2.964 (4) 164
C1—H1···O4i 0.98 2.57 3.533 (4) 167
C11—H11···O1ii 0.98 2.50 3.403 (4) 154

Symmetry codes: (i) x+1/2, −y+5/2, −z; (ii) x−1/2, −y+3/2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZL2390).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030467/zl2390sup1.cif

e-67-o2226-sup1.cif (26KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030467/zl2390Isup2.hkl

e-67-o2226-Isup2.hkl (101.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811030467/zl2390Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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