Abstract
In the title compound, C16H13ClN2S, the dihedral angle between the 4-chlorobenzaldehyde moiety and the heterocyclic five-membered ring is 7.21 (17)°. In the crystal, molecules are linked by weak C—H⋯π interactions, generating [100] chains.
Related literature
For a related structure, see: Asiri et al. (2011 ▶).
Experimental
Crystal data
C16H13ClN2S
M r = 300.79
Orthorhombic,
a = 4.7815 (3) Å
b = 16.5670 (13) Å
c = 18.1658 (14) Å
V = 1439.01 (18) Å3
Z = 4
Mo Kα radiation
μ = 0.40 mm−1
T = 296 K
0.35 × 0.15 × 0.12 mm
Data collection
Bruker Kappa APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.931, T max = 0.951
11075 measured reflections
2607 independent reflections
1821 reflections with I > 2σ(I)
R int = 0.055
Refinement
R[F 2 > 2σ(F 2)] = 0.044
wR(F 2) = 0.099
S = 1.02
2607 reflections
181 parameters
H-atom parameters constrained
Δρmax = 0.26 e Å−3
Δρmin = −0.19 e Å−3
Absolute structure: Flack (1983 ▶), 1053 Friedel pairs
Flack parameter: 0.03 (10)
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811030704/hb6331sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030704/hb6331Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811030704/hb6331Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg is the centroid of the C8–C11/S1 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C13—H13A⋯Cgi | 0.97 | 2.99 | 3.841 (6) | 147 |
Symmetry code: (i)
.
Acknowledgments
The authors thank the Chemistry Department, King Abdul Aziz University, Jeddah, Saudi Arabia, for providing the research facilities and for the financial support of this work via grant No. (3–045/430).
supplementary crystallographic information
Comment
We have reported the crystal structure of 2-[(benzo[1,3]dioxol-5-ylmethylene)-amino]-4,5,6,7-tetrahydro-benzo[b]thiophene -3-carbonitrile (Asiri et al., 2011) which is related to the title compound, (I), Fig. 1.
In (I), the group A (C1–C7/CL1) of 4-chlorobenzaldehyde and the five membered ring B (C8—C11/S1) of 2-amino-4,5,6,7-tetrahydro-1-benzothiophene-3- carbonitrile group are almost planar with r. m. s. deviation of 0.0150 and 0.0110 Å, respectively. The dihedral angle between A/B is 7.21 (17)°. A C—H···π interaction (Table 1) occurs in the crystal.
Experimental
A mixture of 4-chloro benzaldehyde (0.46 g, 2.4 mmol) and 2-amino-4,5,6,7-tetrahydro-benzo[b]thiophene-carbonitrile (0.32 g, 3.3 mmol) in ethanol (15 ml) was heated for 3 h. The progress of the reaction was monitored by TLC. The solid that separated from the cooled mixture was collected and recrystallized from a methanol-chloroform mixture (8:2) to give yellow needles of the title compound (I). Yield: 82%, m.p. 504–505 K.
Refinement
The H-atoms were positioned geometrically (C–H = 0.93–0.97 Å) and refined as riding with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
View of (I) showing 50% displacement ellipsoids.
Crystal data
| C16H13ClN2S | F(000) = 624 |
| Mr = 300.79 | Dx = 1.388 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 1821 reflections |
| a = 4.7815 (3) Å | θ = 3.3–25.2° |
| b = 16.5670 (13) Å | µ = 0.40 mm−1 |
| c = 18.1658 (14) Å | T = 296 K |
| V = 1439.01 (18) Å3 | Needle, yellow |
| Z = 4 | 0.35 × 0.15 × 0.12 mm |
Data collection
| Bruker Kappa APEXII CCD diffractometer | 2607 independent reflections |
| Radiation source: fine-focus sealed tube | 1821 reflections with I > 2σ(I) |
| graphite | Rint = 0.055 |
| Detector resolution: 8.20 pixels mm-1 | θmax = 25.2°, θmin = 3.3° |
| ω scans | h = −5→5 |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −19→17 |
| Tmin = 0.931, Tmax = 0.951 | l = −21→21 |
| 11075 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
| wR(F2) = 0.099 | w = 1/[σ2(Fo2) + (0.0416P)2 + 0.1311P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.02 | (Δ/σ)max < 0.001 |
| 2607 reflections | Δρmax = 0.26 e Å−3 |
| 181 parameters | Δρmin = −0.19 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 1053 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.03 (10) |
Special details
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | −0.7805 (2) | −0.17259 (7) | −0.04726 (7) | 0.0797 (4) | |
| S1 | 0.4743 (2) | 0.20961 (5) | 0.08062 (4) | 0.0506 (3) | |
| N1 | 0.1842 (6) | 0.06647 (16) | 0.10865 (15) | 0.0453 (10) | |
| N2 | 0.4578 (9) | 0.0048 (2) | 0.28643 (17) | 0.0787 (14) | |
| C1 | −0.1473 (7) | 0.0110 (2) | 0.02527 (17) | 0.0406 (11) | |
| C2 | −0.2345 (8) | −0.0493 (2) | 0.07260 (19) | 0.0503 (12) | |
| C3 | −0.4313 (7) | −0.1048 (2) | 0.0506 (2) | 0.0547 (12) | |
| C4 | −0.5384 (7) | −0.1013 (2) | −0.01982 (19) | 0.0513 (12) | |
| C5 | −0.4597 (8) | −0.0416 (2) | −0.06685 (19) | 0.0560 (12) | |
| C6 | −0.2640 (7) | 0.0135 (2) | −0.04455 (18) | 0.0510 (12) | |
| C7 | 0.0619 (7) | 0.06949 (19) | 0.04718 (19) | 0.0445 (11) | |
| C8 | 0.3759 (7) | 0.1241 (2) | 0.12951 (18) | 0.0443 (12) | |
| C9 | 0.5135 (8) | 0.12209 (18) | 0.19578 (15) | 0.0393 (10) | |
| C10 | 0.6876 (6) | 0.19068 (19) | 0.20924 (17) | 0.0403 (11) | |
| C11 | 0.6880 (7) | 0.24227 (19) | 0.15209 (17) | 0.0417 (12) | |
| C12 | 0.8316 (8) | 0.3222 (2) | 0.15026 (19) | 0.0540 (12) | |
| C13 | 1.0043 (12) | 0.3330 (3) | 0.2182 (3) | 0.0947 (19) | |
| C14 | 0.9144 (12) | 0.2949 (3) | 0.2830 (2) | 0.103 (2) | |
| C15 | 0.8375 (7) | 0.2073 (2) | 0.27953 (18) | 0.0527 (12) | |
| C16 | 0.4818 (9) | 0.0573 (2) | 0.24609 (17) | 0.0484 (11) | |
| H2 | −0.15934 | −0.05237 | 0.11974 | 0.0602* | |
| H3 | −0.49192 | −0.14449 | 0.08309 | 0.0652* | |
| H5 | −0.53781 | −0.03830 | −0.11363 | 0.0670* | |
| H6 | −0.20794 | 0.05376 | −0.07708 | 0.0609* | |
| H7 | 0.10771 | 0.11083 | 0.01472 | 0.0534* | |
| H12A | 0.69350 | 0.36500 | 0.14716 | 0.0649* | |
| H12B | 0.95053 | 0.32546 | 0.10711 | 0.0649* | |
| H13A | 1.19183 | 0.31404 | 0.20749 | 0.1138* | |
| H13B | 1.01751 | 0.39043 | 0.22811 | 0.1138* | |
| H14A | 0.75291 | 0.32421 | 0.30118 | 0.1240* | |
| H14B | 1.06135 | 0.30081 | 0.31940 | 0.1240* | |
| H15A | 1.00517 | 0.17449 | 0.28231 | 0.0631* | |
| H15B | 0.71853 | 0.19360 | 0.32092 | 0.0631* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0610 (7) | 0.0690 (7) | 0.1092 (9) | −0.0156 (6) | −0.0022 (6) | −0.0261 (6) |
| S1 | 0.0612 (6) | 0.0437 (5) | 0.0469 (4) | −0.0018 (5) | −0.0048 (5) | 0.0056 (4) |
| N1 | 0.0506 (18) | 0.0409 (18) | 0.0444 (16) | 0.0006 (16) | −0.0036 (14) | −0.0047 (13) |
| N2 | 0.105 (3) | 0.069 (2) | 0.062 (2) | −0.014 (2) | −0.007 (2) | 0.0196 (19) |
| C1 | 0.0409 (19) | 0.036 (2) | 0.045 (2) | 0.0070 (17) | 0.0009 (15) | −0.0040 (16) |
| C2 | 0.057 (2) | 0.046 (2) | 0.048 (2) | 0.0009 (19) | −0.0022 (19) | −0.0042 (18) |
| C3 | 0.058 (2) | 0.044 (2) | 0.062 (2) | 0.005 (2) | 0.011 (2) | 0.0012 (19) |
| C4 | 0.040 (2) | 0.046 (2) | 0.068 (2) | 0.002 (2) | 0.001 (2) | −0.0177 (19) |
| C5 | 0.054 (2) | 0.060 (2) | 0.054 (2) | −0.004 (2) | −0.009 (2) | −0.0066 (19) |
| C6 | 0.056 (2) | 0.048 (2) | 0.049 (2) | −0.001 (2) | 0.001 (2) | 0.0010 (18) |
| C7 | 0.050 (2) | 0.038 (2) | 0.0454 (18) | −0.0005 (18) | 0.0050 (19) | 0.0018 (16) |
| C8 | 0.046 (2) | 0.040 (2) | 0.047 (2) | 0.0011 (18) | 0.0043 (16) | −0.0030 (16) |
| C9 | 0.0423 (19) | 0.0362 (18) | 0.0394 (17) | 0.0020 (18) | 0.0040 (17) | 0.0007 (14) |
| C10 | 0.0350 (18) | 0.040 (2) | 0.0459 (19) | 0.0040 (18) | 0.0049 (15) | −0.0024 (17) |
| C11 | 0.040 (2) | 0.036 (2) | 0.049 (2) | 0.0008 (17) | 0.0045 (16) | −0.0023 (17) |
| C12 | 0.056 (2) | 0.042 (2) | 0.064 (2) | −0.001 (2) | 0.0060 (19) | 0.0011 (18) |
| C13 | 0.112 (4) | 0.070 (3) | 0.102 (3) | −0.044 (3) | −0.038 (4) | 0.007 (3) |
| C14 | 0.154 (5) | 0.092 (4) | 0.064 (3) | −0.063 (4) | −0.007 (3) | −0.012 (3) |
| C15 | 0.051 (2) | 0.056 (2) | 0.051 (2) | −0.005 (2) | −0.0019 (17) | −0.0042 (19) |
| C16 | 0.055 (2) | 0.050 (2) | 0.0403 (18) | −0.005 (2) | −0.0030 (19) | −0.0001 (17) |
Geometric parameters (Å, °)
| Cl1—C4 | 1.727 (4) | C11—C12 | 1.492 (5) |
| S1—C8 | 1.737 (3) | C12—C13 | 1.496 (7) |
| S1—C11 | 1.739 (3) | C13—C14 | 1.403 (7) |
| N1—C7 | 1.262 (4) | C14—C15 | 1.499 (6) |
| N1—C8 | 1.377 (4) | C2—H2 | 0.9300 |
| N2—C16 | 1.143 (5) | C3—H3 | 0.9300 |
| C1—C2 | 1.382 (5) | C5—H5 | 0.9300 |
| C1—C6 | 1.386 (5) | C6—H6 | 0.9300 |
| C1—C7 | 1.448 (5) | C7—H7 | 0.9300 |
| C2—C3 | 1.375 (5) | C12—H12A | 0.9700 |
| C3—C4 | 1.379 (5) | C12—H12B | 0.9700 |
| C4—C5 | 1.360 (5) | C13—H13A | 0.9700 |
| C5—C6 | 1.369 (5) | C13—H13B | 0.9700 |
| C8—C9 | 1.372 (4) | C14—H14A | 0.9700 |
| C9—C10 | 1.430 (4) | C14—H14B | 0.9700 |
| C9—C16 | 1.418 (4) | C15—H15A | 0.9700 |
| C10—C11 | 1.345 (4) | C15—H15B | 0.9700 |
| C10—C15 | 1.490 (4) | ||
| C8—S1—C11 | 91.79 (15) | C1—C2—H2 | 120.00 |
| C7—N1—C8 | 121.7 (3) | C3—C2—H2 | 120.00 |
| C2—C1—C6 | 118.0 (3) | C2—C3—H3 | 120.00 |
| C2—C1—C7 | 121.4 (3) | C4—C3—H3 | 120.00 |
| C6—C1—C7 | 120.6 (3) | C4—C5—H5 | 120.00 |
| C1—C2—C3 | 120.6 (3) | C6—C5—H5 | 120.00 |
| C2—C3—C4 | 119.7 (3) | C1—C6—H6 | 119.00 |
| Cl1—C4—C3 | 119.2 (3) | C5—C6—H6 | 119.00 |
| Cl1—C4—C5 | 120.1 (3) | N1—C7—H7 | 119.00 |
| C3—C4—C5 | 120.7 (3) | C1—C7—H7 | 119.00 |
| C4—C5—C6 | 119.2 (3) | C11—C12—H12A | 110.00 |
| C1—C6—C5 | 121.7 (3) | C11—C12—H12B | 110.00 |
| N1—C7—C1 | 122.5 (3) | C13—C12—H12A | 110.00 |
| S1—C8—N1 | 127.3 (2) | C13—C12—H12B | 110.00 |
| S1—C8—C9 | 109.8 (2) | H12A—C12—H12B | 108.00 |
| N1—C8—C9 | 123.0 (3) | C12—C13—H13A | 108.00 |
| C8—C9—C10 | 114.2 (3) | C12—C13—H13B | 108.00 |
| C8—C9—C16 | 122.2 (3) | C14—C13—H13A | 108.00 |
| C10—C9—C16 | 123.6 (3) | C14—C13—H13B | 108.00 |
| C9—C10—C11 | 112.0 (3) | H13A—C13—H13B | 107.00 |
| C9—C10—C15 | 125.0 (3) | C13—C14—H14A | 108.00 |
| C11—C10—C15 | 122.9 (3) | C13—C14—H14B | 108.00 |
| S1—C11—C10 | 112.2 (2) | C15—C14—H14A | 108.00 |
| S1—C11—C12 | 122.0 (2) | C15—C14—H14B | 108.00 |
| C10—C11—C12 | 125.6 (3) | H14A—C14—H14B | 107.00 |
| C11—C12—C13 | 110.0 (3) | C10—C15—H15A | 110.00 |
| C12—C13—C14 | 118.0 (5) | C10—C15—H15B | 110.00 |
| C13—C14—C15 | 118.4 (4) | C14—C15—H15A | 110.00 |
| C10—C15—C14 | 109.5 (3) | C14—C15—H15B | 110.00 |
| N2—C16—C9 | 179.5 (4) | H15A—C15—H15B | 108.00 |
| C11—S1—C8—N1 | 176.1 (3) | S1—C8—C9—C10 | 2.8 (4) |
| C11—S1—C8—C9 | −2.1 (3) | S1—C8—C9—C16 | −177.6 (3) |
| C8—S1—C11—C10 | 0.8 (3) | N1—C8—C9—C10 | −175.4 (3) |
| C8—S1—C11—C12 | −174.3 (3) | N1—C8—C9—C16 | 4.2 (5) |
| C8—N1—C7—C1 | −177.9 (3) | C8—C9—C10—C11 | −2.3 (4) |
| C7—N1—C8—S1 | 2.5 (5) | C8—C9—C10—C15 | 173.8 (3) |
| C7—N1—C8—C9 | −179.6 (3) | C16—C9—C10—C11 | 178.1 (3) |
| C6—C1—C2—C3 | −0.1 (5) | C16—C9—C10—C15 | −5.8 (5) |
| C7—C1—C2—C3 | −179.3 (3) | C9—C10—C11—S1 | 0.6 (4) |
| C2—C1—C6—C5 | 0.0 (5) | C9—C10—C11—C12 | 175.6 (3) |
| C7—C1—C6—C5 | 179.3 (3) | C15—C10—C11—S1 | −175.6 (2) |
| C2—C1—C7—N1 | 3.4 (5) | C15—C10—C11—C12 | −0.6 (5) |
| C6—C1—C7—N1 | −175.9 (3) | C9—C10—C15—C14 | −160.7 (3) |
| C1—C2—C3—C4 | 1.4 (5) | C11—C10—C15—C14 | 15.0 (5) |
| C2—C3—C4—Cl1 | 178.8 (3) | S1—C11—C12—C13 | −178.9 (3) |
| C2—C3—C4—C5 | −2.6 (5) | C10—C11—C12—C13 | 6.6 (5) |
| Cl1—C4—C5—C6 | −178.9 (3) | C11—C12—C13—C14 | −29.9 (6) |
| C3—C4—C5—C6 | 2.5 (5) | C12—C13—C14—C15 | 49.0 (7) |
| C4—C5—C6—C1 | −1.2 (5) | C13—C14—C15—C10 | −38.8 (6) |
Hydrogen-bond geometry (Å, °)
| Cg is the centroid of the C8–C11/S1 ring. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| C13—H13A···Cgi | 0.97 | 2.99 | 3.841 (6) | 147 |
Symmetry codes: (i) x+1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6331).
References
- Asiri, A. M., Khan, S. A. & Tahir, M. N. (2011). Acta Cryst. E67, o2162. [DOI] [PMC free article] [PubMed]
- Bruker (2005). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2009). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
- Flack, H. D. (1983). Acta Cryst. A39, 876–881.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811030704/hb6331sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030704/hb6331Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811030704/hb6331Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

