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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 27;67(Pt 9):o2433. doi: 10.1107/S1600536811033009

3-(1,3-Dithio­lan-2-yl­idene)-1-(4-meth­oxy­phen­yl)pyridine-2,4(1H,3H)-dione

Yan-Chun Ma a,*, Jin-Long Song b
PMCID: PMC3200629  PMID: 22064441

Abstract

In the title compound, C15H13NO3S2, the dithiol­ane ring adopts a twisted conformation. The mol­ecule exhibits a V-shaped conformation, with a dihedral angle of 79.05 (7)° between the benzene ring and the pyridine ring. In the crystal, C—H⋯O inter­actions are observed.

Related literature

For the synthesis, see: Li et al. (2008). For background to N-substituted pyridine compounds and their potential use in medicinal chemistry, see: Kim et al. (2008); Zhu et al. (2006)graphic file with name e-67-o2433-scheme1.jpg

Experimental

Crystal data

  • C15H13NO3S2

  • M r = 319.40

  • Monoclinic, Inline graphic

  • a = 5.322 (2) Å

  • b = 27.521 (11) Å

  • c = 10.065 (4) Å

  • β = 100.831 (5)°

  • V = 1448.0 (10) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.38 mm−1

  • T = 293 K

  • 0.35 × 0.29 × 0.28 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2002) T min = 0.892, T max = 0.912

  • 12346 measured reflections

  • 2905 independent reflections

  • 1973 reflections with I > 2σ(I)

  • R int = 0.053

Refinement

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.121

  • S = 1.08

  • 2905 reflections

  • 190 parameters

  • H-atom parameters constrained

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: APEX2 (Bruker, 2002); cell refinement: SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033009/ff2024sup1.cif

e-67-o2433-sup1.cif (15.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033009/ff2024Isup2.hkl

e-67-o2433-Isup2.hkl (142.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811033009/ff2024Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C8—H8⋯O2i 0.93 2.42 3.259 (3) 150

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank the Educational Institute of Jilin Province for supporting this work.

supplementary crystallographic information

Comment

Among the richness of heterocyclic compounds, N-substituted pyridone compounds (Zhu et al., 2006) have attracted an intense interest due to their potential for medicinal chemistry (Kim et al., 2008). Recently, a large number of N-substituted pyridone compounds have been prepared (Li et al., 2008). As a contribution to this field, the structure of the title crystal is presented here. The molecular structure of the title compound, together with the atom-numbering scheme, is illustrated in Fig.1. Selected bond lengths and angles are given in Table 1. The molecule exhibits a V-shaped conformation in the crystal with a dihedral angle of 79.05 (7)° between the benzene ring and the pyridine ring. The dithiolane ring has a twisted conformation.

Experimental

The title compound was synthesized according to the literature (Li et al., 2008). It was dissolved in ethyl acetate at room temperature and hexane was added. The solution was kept at room temperature in a sealed flask for a few days to give single crystals suitable for single-crystal X-ray analysis.

Refinement

All H atoms bound to C atoms were generated geometrically and refined as riding atoms with C—H= 0.93Å for aromatic H , 0.96Å for CH3 groups, 0.97Å for CH2 groups, and with Uiso(H) = 1.5Ueq(C) for CH3 groups and Uiso(H) = 1.2Ueq(C) for all the other groups.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound with displacement ellipsoids drawn at the 30% probability level for non-H atoms.

Crystal data

C15H13NO3S2 Z = 4
Mr = 319.40 F(000) = 664
Monoclinic, P21/n Dx = 1.453 Mg m3
Hall symbol: -p 2yn Mo Kα radiation, λ = 0.71073 Å
a = 5.322 (2) Å θ = 2.7–27.1°
b = 27.521 (11) Å µ = 0.38 mm1
c = 10.065 (4) Å T = 293 K
β = 100.831 (5)° Block, yellow
V = 1448.0 (10) Å3 0.35 × 0.29 × 0.28 mm

Data collection

Bruker APEXII CCD diffractometer 2905 independent reflections
Radiation source: fine-focus sealed tube 1973 reflections with I > 2σ(I)
graphite Rint = 0.053
ω scans θmax = 26.2°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2002) h = −6→6
Tmin = 0.892, Tmax = 0.912 k = −34→33
12346 measured reflections l = −12→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0581P)2] where P = (Fo2 + 2Fc2)/3
2905 reflections (Δ/σ)max < 0.001
190 parameters Δρmax = 0.43 e Å3
0 restraints Δρmin = −0.30 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S2 0.24453 (13) 0.13081 (2) 1.20138 (7) 0.0510 (2)
S1 0.45027 (15) 0.05404 (2) 1.05151 (8) 0.0620 (3)
N1 0.6394 (4) 0.23410 (7) 0.9727 (2) 0.0462 (5)
O2 0.3943 (3) 0.21607 (6) 1.12752 (18) 0.0595 (5)
O1 0.7470 (4) 0.09067 (7) 0.89857 (19) 0.0670 (5)
O3 0.5220 (4) 0.43233 (7) 1.0589 (2) 0.0736 (6)
C13 0.4297 (4) 0.11562 (9) 1.0831 (2) 0.0418 (6)
C11 0.5545 (4) 0.14965 (8) 1.0179 (2) 0.0419 (6)
C4 0.6118 (5) 0.28548 (8) 0.9964 (2) 0.0452 (6)
C12 0.5218 (4) 0.20108 (8) 1.0456 (2) 0.0436 (6)
C5 0.3930 (5) 0.30960 (10) 0.9369 (3) 0.0586 (7)
H5 0.2618 0.2929 0.8811 0.070*
C6 0.3694 (5) 0.35832 (10) 0.9602 (3) 0.0629 (8)
H6 0.2219 0.3747 0.9197 0.075*
C3 0.8034 (5) 0.31005 (9) 1.0787 (2) 0.0516 (6)
H3 0.9504 0.2936 1.1193 0.062*
C7 0.5642 (5) 0.38348 (9) 1.0438 (3) 0.0528 (6)
C10 0.7144 (5) 0.13424 (10) 0.9219 (2) 0.0484 (6)
C8 0.7884 (5) 0.21885 (10) 0.8818 (2) 0.0522 (7)
H8 0.8649 0.2423 0.8362 0.063*
C9 0.8276 (5) 0.17249 (10) 0.8563 (3) 0.0525 (6)
H9 0.9309 0.1646 0.7944 0.063*
C2 0.7809 (5) 0.35902 (9) 1.1022 (3) 0.0566 (7)
H2 0.9130 0.3755 1.1578 0.068*
C14 0.2073 (6) 0.03558 (11) 1.1426 (4) 0.0849 (10)
H14A 0.0436 0.0341 1.0811 0.102*
H14B 0.2466 0.0034 1.1800 0.102*
C15 0.1914 (7) 0.06899 (10) 1.2493 (4) 0.0856 (11)
H15A 0.3178 0.0604 1.3284 0.103*
H15B 0.0236 0.0665 1.2733 0.103*
C1 0.7075 (8) 0.45886 (12) 1.1489 (4) 0.1129 (14)
H1A 0.6552 0.4922 1.1501 0.169*
H1B 0.8688 0.4570 1.1197 0.169*
H1C 0.7246 0.4454 1.2382 0.169*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S2 0.0644 (4) 0.0431 (4) 0.0516 (4) −0.0063 (3) 0.0267 (3) −0.0052 (3)
S1 0.0783 (5) 0.0396 (4) 0.0762 (5) 0.0019 (3) 0.0355 (4) −0.0043 (3)
N1 0.0534 (12) 0.0425 (12) 0.0455 (12) −0.0073 (9) 0.0167 (10) −0.0016 (9)
O2 0.0830 (13) 0.0423 (10) 0.0643 (12) −0.0049 (9) 0.0424 (11) −0.0071 (8)
O1 0.0835 (14) 0.0528 (12) 0.0735 (13) 0.0071 (10) 0.0375 (11) −0.0083 (10)
O3 0.0977 (16) 0.0497 (12) 0.0752 (14) 0.0139 (11) 0.0208 (12) 0.0030 (10)
C13 0.0456 (14) 0.0412 (13) 0.0390 (13) 0.0025 (10) 0.0093 (10) −0.0032 (10)
C11 0.0436 (13) 0.0427 (13) 0.0409 (14) 0.0002 (11) 0.0112 (11) −0.0011 (11)
C4 0.0471 (14) 0.0448 (15) 0.0462 (14) −0.0043 (11) 0.0152 (11) 0.0055 (11)
C12 0.0495 (14) 0.0439 (14) 0.0389 (13) −0.0055 (11) 0.0126 (11) −0.0008 (11)
C5 0.0442 (15) 0.0590 (18) 0.0696 (18) −0.0090 (13) 0.0031 (13) 0.0087 (14)
C6 0.0475 (16) 0.0624 (18) 0.079 (2) 0.0068 (14) 0.0109 (14) 0.0181 (16)
C3 0.0512 (15) 0.0476 (16) 0.0530 (16) 0.0020 (12) 0.0020 (12) 0.0010 (12)
C7 0.0675 (18) 0.0476 (15) 0.0478 (15) 0.0033 (14) 0.0220 (13) 0.0053 (12)
C10 0.0489 (15) 0.0541 (17) 0.0440 (15) 0.0022 (12) 0.0136 (11) −0.0026 (12)
C8 0.0502 (15) 0.0654 (18) 0.0446 (15) −0.0103 (13) 0.0179 (12) 0.0012 (13)
C9 0.0538 (15) 0.0616 (17) 0.0471 (15) −0.0036 (13) 0.0224 (12) −0.0070 (13)
C2 0.0629 (17) 0.0517 (17) 0.0518 (16) −0.0027 (13) 0.0017 (13) −0.0031 (13)
C14 0.111 (3) 0.0483 (17) 0.110 (3) −0.0121 (17) 0.058 (2) −0.0059 (18)
C15 0.126 (3) 0.0514 (18) 0.096 (2) −0.0232 (18) 0.065 (2) −0.0066 (17)
C1 0.166 (4) 0.060 (2) 0.101 (3) 0.015 (2) −0.005 (3) −0.026 (2)

Geometric parameters (Å, °)

S2—C13 1.733 (2) C6—C7 1.391 (4)
S2—C15 1.805 (3) C6—H6 0.9300
S1—C13 1.732 (3) C3—C2 1.377 (3)
S1—C14 1.793 (3) C3—H3 0.9300
N1—C8 1.384 (3) C7—C2 1.369 (3)
N1—C12 1.389 (3) C10—C9 1.434 (3)
N1—C4 1.446 (3) C8—C9 1.326 (3)
O2—C12 1.233 (3) C8—H8 0.9300
O1—C10 1.240 (3) C9—H9 0.9300
O3—C7 1.376 (3) C2—H2 0.9300
O3—C1 1.412 (4) C14—C15 1.429 (4)
C13—C11 1.383 (3) C14—H14A 0.9700
C11—C12 1.459 (3) C14—H14B 0.9700
C11—C10 1.466 (3) C15—H15A 0.9700
C4—C3 1.366 (3) C15—H15B 0.9700
C4—C5 1.376 (3) C1—H1A 0.9600
C5—C6 1.371 (4) C1—H1B 0.9600
C5—H5 0.9300 C1—H1C 0.9600
C13—S2—C15 95.41 (12) O1—C10—C9 122.5 (2)
C13—S1—C14 96.14 (12) O1—C10—C11 121.6 (2)
C8—N1—C12 121.5 (2) C9—C10—C11 116.0 (2)
C8—N1—C4 119.61 (19) C9—C8—N1 123.4 (2)
C12—N1—C4 118.88 (19) C9—C8—H8 118.3
C7—O3—C1 117.8 (2) N1—C8—H8 118.3
C11—C13—S1 121.55 (18) C8—C9—C10 121.5 (2)
C11—C13—S2 123.24 (18) C8—C9—H9 119.3
S1—C13—S2 115.21 (13) C10—C9—H9 119.3
C13—C11—C12 118.8 (2) C7—C2—C3 120.0 (2)
C13—C11—C10 120.5 (2) C7—C2—H2 120.0
C12—C11—C10 120.8 (2) C3—C2—H2 120.0
C3—C4—C5 120.0 (2) C15—C14—S1 110.6 (2)
C3—C4—N1 119.8 (2) C15—C14—H14A 109.5
C5—C4—N1 120.3 (2) S1—C14—H14A 109.5
O2—C12—N1 119.6 (2) C15—C14—H14B 109.5
O2—C12—C11 123.5 (2) S1—C14—H14B 109.5
N1—C12—C11 116.9 (2) H14A—C14—H14B 108.1
C6—C5—C4 119.6 (2) C14—C15—S2 111.8 (2)
C6—C5—H5 120.2 C14—C15—H15A 109.3
C4—C5—H5 120.2 S2—C15—H15A 109.3
C5—C6—C7 120.6 (2) C14—C15—H15B 109.3
C5—C6—H6 119.7 S2—C15—H15B 109.3
C7—C6—H6 119.7 H15A—C15—H15B 107.9
C4—C3—C2 120.6 (2) O3—C1—H1A 109.5
C4—C3—H3 119.7 O3—C1—H1B 109.5
C2—C3—H3 119.7 H1A—C1—H1B 109.5
C2—C7—O3 125.1 (3) O3—C1—H1C 109.5
C2—C7—C6 119.2 (2) H1A—C1—H1C 109.5
O3—C7—C6 115.8 (2) H1B—C1—H1C 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C8—H8···O2i 0.93 2.42 3.259 (3) 150
C14—H14a···O1ii 0.97 2.685 3.475 (4) 139
C14—H14b···O1iii 0.97 2.709 3.513 (4) 141

Symmetry codes: (i) x+1/2, −y+1/2, z−1/2; (ii) x−1, y, z; (iii) −x+1, −y, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FF2024).

References

  1. Bruker (2002). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Kim, K. S., Zhang, L., Schmidt, R., Cai, Z. W., Wei, D., Williams, D. K., Lombardo, L. J., Trainor, G. L., Xie, D., Zhang, Y., An, Y., Sack, J. S., Tokarski, J. S., Darienzo, C., Kamath, A., Marathe, P., Zhang, Y., Lippy, J., Jeyaseelan, R. S., Wautlet, B., Henley, B., Gullo-Brown, J., Manne, V., Hunt, J. T., Fargnoli, J. & Borzilleri, R. M. (2008). J. Med. Chem. 51, 5330–5341. [DOI] [PubMed]
  3. Li, Y.-H., Li, W.-L., Zhang, R., Zhou, Y. & Dong, D.-W. (2008). Synthesis, 21, 3411–3414.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Zhu, T., Yan, Z., Chucholowski, A., Webb, T. R. & Li, R.-S. (2006). J. Comb. Chem. 8, 401–409. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033009/ff2024sup1.cif

e-67-o2433-sup1.cif (15.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033009/ff2024Isup2.hkl

e-67-o2433-Isup2.hkl (142.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811033009/ff2024Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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