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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 11;67(Pt 9):o2286. doi: 10.1107/S1600536811031278

1,4-Bis(1H-benzimidazol-1-yl)benzene

Guo-Feng Sun a,*, Jian-Ping Hu a, Dian-Yong Tang a, Yuan-Qin Zhang a
PMCID: PMC3200633  PMID: 22058929

Abstract

In the title compound, C20H14N4, the dihedral angles between the central benzene ring and the pendant benzimidazole ring systems are 46.60 (15) and 47.89 (16)°. The dihedral angle between the benzimidazole ring systems is 85.62 (12)° and the N atoms lie to the same side of the mol­ecule. In the crystal, mol­ecules are linked by C—H⋯N inter­actions and weak aromatic π–π stacking [shortest centroid–centroid separation = 3.770 (2) Å] is observed.

Related literature

For background to benzimidazole derivatives as ligands in crystal engineering, see: Li et al. (2009); Vijayan et al. (2006).graphic file with name e-67-o2286-scheme1.jpg

Experimental

Crystal data

  • C20H14N4

  • M r = 310.35

  • Orthorhombic, Inline graphic

  • a = 9.5458 (19) Å

  • b = 20.499 (4) Å

  • c = 7.9283 (16) Å

  • V = 1551.4 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 293 K

  • 0.25 × 0.22 × 0.18 mm

Data collection

  • Rigaku Mercury CCD diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) T min = 0.980, T max = 0.985

  • 12744 measured reflections

  • 1479 independent reflections

  • 1298 reflections with I > 2σ(I)

  • R int = 0.075

Refinement

  • R[F 2 > 2σ(F 2)] = 0.051

  • wR(F 2) = 0.104

  • S = 1.17

  • 1479 reflections

  • 231 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.14 e Å−3

  • Δρmin = −0.16 e Å−3

Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811031278/hb6340sup1.cif

e-67-o2286-sup1.cif (19.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031278/hb6340Isup2.hkl

e-67-o2286-Isup2.hkl (73KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811031278/hb6340Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C1—H1⋯N4i 0.93 2.50 3.359 (5) 153
C6—H6⋯N4ii 0.93 2.56 3.447 (5) 159

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

In recent years, benzimidazole has been well used in crystal engineering, because they exhibit a strong networking ability (Vijayan et al., 2006). To our knowledge, the research on benzimidazole ligands bearing rigid spacers is still less developed (Li et al., 2009), and the title compound was well designed for building polymer architecture. We report here the structure and conformation of a rigid benzimidazole derivative, and further explore the ligand coordination. As shown in Fig. 1, the title compound is trans-conformation and tends to trans-coordination. The molecule has no inversion centre because two benzimidazole rings are not coplanar.

Experimental

The ligand 1,4-di(1H-benzimidazol-1-yl)benzene was prepared by a modified method (Li et al., 2009). A mixture of 1,4-dibromophenyl (3.72 g, 12.0 mmol), benzimidazole (4.25 g, 36.0 mmol), CuI (0.38 g, 2.0 mmol), 1,10-phenanthroline (0.72 g, 4.0 mmol), and Cs2CO3 (2.48 g, 18.0 mmol) was suspended in DMF (50 ml) and refluxed for 48 h to afford (I) as off-white powder, yield: 25% (based on 1,4-dibromophenyl), Mp: 291°C. Colourless blocks of (I) were obtained by recrystallizing from a mixed solvent of methanol and water (1:1).

Refinement

C-bound H atoms were positioned geometrically and refined in the riding-model approximation, with C—H = 0.93Å and Uiso(H) = 1.2Ueq. Anomalous dispersion was negligible and Friedel pairs were merged before refinement.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I). Displacement ellipsoids are drawn at the 30% probability level and H atoms are shown as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

The crystal packing for (I).

Crystal data

C20H14N4 Dx = 1.329 Mg m3
Mr = 310.35 Melting point: 564 K
Orthorhombic, Pna21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2n Cell parameters from 13068 reflections
a = 9.5458 (19) Å θ = 3.3–27.6°
b = 20.499 (4) Å µ = 0.08 mm1
c = 7.9283 (16) Å T = 293 K
V = 1551.4 (5) Å3 Block, colorless
Z = 4 0.25 × 0.22 × 0.18 mm
F(000) = 648

Data collection

Rigaku Mercury CCD diffractometer 1479 independent reflections
Radiation source: fine-focus sealed tube 1298 reflections with I > 2σ(I)
graphite Rint = 0.075
Detector resolution: 9 pixels mm-1 θmax = 25.0°, θmin = 3.5°
ω scans h = −11→11
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) k = −24→24
Tmin = 0.980, Tmax = 0.985 l = −9→9
12744 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104 H-atom parameters constrained
S = 1.17 w = 1/[σ2(Fo2) + (0.0488P)2 + 0.1271P] where P = (Fo2 + 2Fc2)/3
1479 reflections (Δ/σ)max < 0.001
231 parameters Δρmax = 0.14 e Å3
1 restraint Δρmin = −0.16 e Å3
0 constraints

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.2140 (3) 0.55131 (15) 0.6320 (4) 0.0462 (8)
N2 0.4461 (3) 0.53457 (14) 0.6010 (4) 0.0411 (8)
N3 0.9643 (3) 0.40659 (14) 0.6681 (4) 0.0383 (7)
N4 1.1632 (3) 0.37523 (15) 0.7980 (4) 0.0479 (9)
C1 0.3178 (4) 0.51125 (18) 0.6527 (5) 0.0452 (9)
H1 0.3065 0.4699 0.6993 0.043 (10)*
C2 0.2750 (3) 0.60700 (16) 0.5602 (4) 0.0361 (8)
C3 0.2141 (4) 0.66544 (17) 0.5108 (5) 0.0427 (9)
H3 0.1189 0.6729 0.5263 0.036 (9)*
C4 0.2986 (4) 0.71179 (17) 0.4385 (5) 0.0421 (9)
H4 0.2598 0.7513 0.4047 0.063 (13)*
C5 0.4412 (4) 0.70086 (17) 0.4146 (5) 0.0442 (10)
H5 0.4948 0.7331 0.3629 0.046 (11)*
C6 0.5059 (4) 0.64388 (17) 0.4649 (5) 0.0431 (9)
H6 0.6014 0.6371 0.4499 0.045 (10)*
C7 0.4197 (3) 0.59693 (16) 0.5399 (5) 0.0364 (8)
C8 0.5788 (3) 0.50222 (17) 0.6151 (4) 0.0379 (9)
C9 0.5905 (4) 0.43768 (17) 0.5667 (5) 0.0419 (9)
H9 0.5134 0.4158 0.5226 0.058 (12)*
C10 0.7177 (3) 0.40549 (17) 0.5842 (5) 0.0408 (9)
H10 0.7256 0.3618 0.5539 0.037 (9)*
C11 0.8327 (3) 0.43899 (17) 0.6469 (5) 0.0366 (8)
C12 0.8204 (4) 0.50358 (17) 0.6927 (5) 0.0421 (9)
H12 0.8982 0.5260 0.7330 0.047 (11)*
C13 0.6930 (4) 0.53532 (18) 0.6794 (5) 0.0455 (10)
H13 0.6843 0.5786 0.7130 0.037 (10)*
C14 1.0470 (4) 0.40901 (19) 0.8087 (5) 0.0443 (9)
H14 1.0229 0.4329 0.9042 0.046 (11)*
C15 1.0353 (3) 0.36720 (16) 0.5527 (5) 0.0391 (9)
C16 1.0063 (4) 0.3484 (2) 0.3891 (6) 0.0523 (11)
H16 0.9241 0.3610 0.3355 0.064 (13)*
C17 1.1043 (4) 0.3103 (2) 0.3088 (6) 0.0662 (12)
H17 1.0880 0.2971 0.1983 0.086 (16)*
C18 1.2279 (5) 0.2907 (2) 0.3899 (6) 0.0650 (13)
H18 1.2914 0.2644 0.3325 0.055 (12)*
C19 1.2571 (4) 0.30983 (19) 0.5533 (6) 0.0525 (10)
H19 1.3397 0.2973 0.6065 0.065 (13)*
C20 1.1584 (4) 0.34847 (17) 0.6357 (5) 0.0423 (9)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0327 (17) 0.0505 (18) 0.056 (2) 0.0003 (15) 0.0048 (16) 0.0058 (17)
N2 0.0318 (16) 0.0426 (18) 0.049 (2) 0.0027 (13) 0.0035 (15) 0.0057 (15)
N3 0.0292 (15) 0.0410 (16) 0.0448 (18) 0.0019 (13) −0.0052 (14) 0.0046 (16)
N4 0.040 (2) 0.058 (2) 0.046 (2) 0.0025 (16) −0.0089 (16) 0.0052 (18)
C1 0.041 (2) 0.038 (2) 0.057 (2) −0.0039 (17) 0.010 (2) 0.009 (2)
C2 0.0285 (17) 0.0417 (19) 0.038 (2) −0.0029 (16) 0.0033 (17) −0.0012 (17)
C3 0.034 (2) 0.047 (2) 0.047 (2) 0.0072 (17) 0.0010 (17) −0.0050 (19)
C4 0.039 (2) 0.0353 (18) 0.052 (2) 0.0059 (17) 0.0013 (19) 0.0000 (19)
C5 0.044 (2) 0.038 (2) 0.051 (2) −0.0019 (18) 0.0041 (19) 0.003 (2)
C6 0.031 (2) 0.047 (2) 0.052 (2) −0.0003 (17) 0.0011 (19) −0.0041 (19)
C7 0.0305 (18) 0.0354 (19) 0.043 (2) 0.0001 (15) 0.0014 (17) −0.0035 (19)
C8 0.0363 (19) 0.041 (2) 0.036 (2) 0.0057 (15) 0.0021 (16) 0.0033 (17)
C9 0.0316 (19) 0.042 (2) 0.052 (2) −0.0021 (16) −0.0049 (18) 0.0017 (19)
C10 0.039 (2) 0.038 (2) 0.046 (2) 0.0017 (17) −0.0042 (17) −0.0015 (18)
C11 0.0318 (19) 0.044 (2) 0.0339 (19) 0.0024 (15) −0.0022 (17) 0.0042 (18)
C12 0.034 (2) 0.043 (2) 0.049 (2) −0.0014 (17) −0.0066 (17) −0.0030 (19)
C13 0.044 (2) 0.039 (2) 0.054 (3) 0.0039 (17) −0.0021 (19) −0.0105 (19)
C14 0.039 (2) 0.053 (2) 0.041 (2) −0.0013 (19) −0.0063 (19) 0.001 (2)
C15 0.0338 (19) 0.0346 (18) 0.049 (2) 0.0030 (15) −0.0013 (18) 0.0040 (18)
C16 0.048 (2) 0.061 (3) 0.048 (2) 0.013 (2) −0.013 (2) −0.007 (2)
C17 0.064 (3) 0.079 (3) 0.056 (3) 0.024 (2) −0.004 (2) −0.015 (3)
C18 0.057 (3) 0.068 (3) 0.070 (3) 0.024 (2) 0.003 (2) −0.010 (3)
C19 0.042 (2) 0.056 (2) 0.060 (3) 0.011 (2) −0.005 (2) 0.006 (2)
C20 0.037 (2) 0.041 (2) 0.049 (2) 0.0012 (16) −0.0034 (19) 0.005 (2)

Geometric parameters (Å, °)

N1—C1 1.298 (5) C8—C13 1.381 (5)
N1—C2 1.402 (4) C8—C9 1.382 (5)
N2—C1 1.377 (4) C9—C10 1.389 (5)
N2—C7 1.390 (4) C9—H9 0.9300
N2—C8 1.434 (4) C10—C11 1.387 (5)
N3—C14 1.367 (4) C10—H10 0.9301
N3—C15 1.396 (5) C11—C12 1.378 (5)
N3—C11 1.431 (4) C12—C13 1.384 (5)
N4—C14 1.310 (4) C12—H12 0.9299
N4—C20 1.400 (5) C13—H13 0.9301
C1—H1 0.9301 C14—H14 0.9299
C2—C3 1.388 (5) C15—C16 1.381 (6)
C2—C7 1.406 (4) C15—C20 1.400 (5)
C3—C4 1.372 (5) C16—C17 1.374 (6)
C3—H3 0.9300 C16—H16 0.9299
C4—C5 1.393 (5) C17—C18 1.402 (6)
C4—H4 0.9299 C17—H17 0.9300
C5—C6 1.380 (5) C18—C19 1.382 (6)
C5—H5 0.9301 C18—H18 0.9300
C6—C7 1.399 (5) C19—C20 1.394 (5)
C6—H6 0.9300 C19—H19 0.9301
C1—N1—C2 104.4 (3) C10—C9—H9 120.0
C1—N2—C7 105.2 (3) C11—C10—C9 119.5 (3)
C1—N2—C8 127.0 (3) C11—C10—H10 120.3
C7—N2—C8 127.8 (3) C9—C10—H10 120.2
C14—N3—C15 106.0 (3) C12—C11—C10 120.2 (3)
C14—N3—C11 125.8 (3) C12—C11—N3 119.3 (3)
C15—N3—C11 128.2 (3) C10—C11—N3 120.5 (3)
C14—N4—C20 103.8 (3) C11—C12—C13 120.4 (3)
N1—C1—N2 115.0 (3) C11—C12—H12 119.8
N1—C1—H1 122.5 C13—C12—H12 119.8
N2—C1—H1 122.5 C8—C13—C12 119.4 (3)
C3—C2—N1 130.0 (3) C8—C13—H13 120.3
C3—C2—C7 120.4 (3) C12—C13—H13 120.3
N1—C2—C7 109.6 (3) N4—C14—N3 114.6 (4)
C4—C3—C2 118.0 (3) N4—C14—H14 122.7
C4—C3—H3 121.0 N3—C14—H14 122.7
C2—C3—H3 120.9 C16—C15—N3 132.8 (3)
C3—C4—C5 121.3 (3) C16—C15—C20 122.2 (4)
C3—C4—H4 119.3 N3—C15—C20 104.9 (3)
C5—C4—H4 119.4 C17—C16—C15 117.2 (4)
C6—C5—C4 122.3 (4) C17—C16—H16 121.4
C6—C5—H5 118.9 C15—C16—H16 121.4
C4—C5—H5 118.9 C16—C17—C18 121.5 (5)
C5—C6—C7 116.2 (3) C16—C17—H17 119.2
C5—C6—H6 121.9 C18—C17—H17 119.3
C7—C6—H6 121.9 C19—C18—C17 121.2 (4)
N2—C7—C6 132.4 (3) C19—C18—H18 119.4
N2—C7—C2 105.9 (3) C17—C18—H18 119.4
C6—C7—C2 121.7 (3) C18—C19—C20 117.7 (4)
C13—C8—C9 120.6 (3) C18—C19—H19 121.2
C13—C8—N2 119.9 (3) C20—C19—H19 121.1
C9—C8—N2 119.5 (3) C19—C20—N4 129.2 (3)
C8—C9—C10 119.8 (3) C19—C20—C15 120.2 (4)
C8—C9—H9 120.1 N4—C20—C15 110.6 (3)
C2—N1—C1—N2 −0.1 (4) C14—N3—C11—C12 46.4 (5)
C7—N2—C1—N1 −0.1 (5) C15—N3—C11—C12 −133.0 (4)
C8—N2—C1—N1 177.2 (4) C14—N3—C11—C10 −132.3 (4)
C1—N1—C2—C3 179.9 (4) C15—N3—C11—C10 48.3 (5)
C1—N1—C2—C7 0.2 (4) C10—C11—C12—C13 1.1 (6)
N1—C2—C3—C4 −178.1 (4) N3—C11—C12—C13 −177.6 (4)
C7—C2—C3—C4 1.5 (5) C9—C8—C13—C12 0.9 (6)
C2—C3—C4—C5 0.2 (6) N2—C8—C13—C12 179.9 (3)
C3—C4—C5—C6 −1.4 (6) C11—C12—C13—C8 −1.8 (6)
C4—C5—C6—C7 0.8 (6) C20—N4—C14—N3 0.6 (4)
C1—N2—C7—C6 −177.3 (4) C15—N3—C14—N4 −0.5 (4)
C8—N2—C7—C6 5.4 (7) C11—N3—C14—N4 −179.9 (3)
C1—N2—C7—C2 0.2 (4) C14—N3—C15—C16 −178.0 (4)
C8—N2—C7—C2 −177.1 (3) C11—N3—C15—C16 1.4 (6)
C5—C6—C7—N2 178.1 (4) C14—N3—C15—C20 0.1 (4)
C5—C6—C7—C2 1.0 (6) C11—N3—C15—C20 179.6 (3)
C3—C2—C7—N2 180.0 (3) N3—C15—C16—C17 177.6 (4)
N1—C2—C7—N2 −0.3 (4) C20—C15—C16—C17 −0.3 (6)
C3—C2—C7—C6 −2.2 (6) C15—C16—C17—C18 0.6 (7)
N1—C2—C7—C6 177.6 (4) C16—C17—C18—C19 −1.0 (7)
C1—N2—C8—C13 −131.9 (4) C17—C18—C19—C20 1.0 (6)
C7—N2—C8—C13 44.8 (5) C18—C19—C20—N4 −178.6 (4)
C1—N2—C8—C9 47.1 (5) C18—C19—C20—C15 −0.6 (5)
C7—N2—C8—C9 −136.2 (4) C14—N4—C20—C19 177.6 (4)
C13—C8—C9—C10 0.7 (6) C14—N4—C20—C15 −0.5 (4)
N2—C8—C9—C10 −178.3 (3) C16—C15—C20—C19 0.3 (5)
C8—C9—C10—C11 −1.4 (6) N3—C15—C20—C19 −178.1 (3)
C9—C10—C11—C12 0.5 (5) C16—C15—C20—N4 178.6 (4)
C9—C10—C11—N3 179.2 (3) N3—C15—C20—N4 0.3 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C1—H1···N4i 0.93 2.50 3.359 (5) 153
C6—H6···N4ii 0.93 2.56 3.447 (5) 159

Symmetry codes: (i) x−1, y, z; (ii) −x+2, −y+1, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6340).

References

  1. Li, Z. X., Xu, Y., Zuo, Y., Li, L., Pan, Q., Hu, T. L. & Bu, X. H. (2009). Cryst. Growth Des. 9, 3904–3909.
  2. Rigaku/MSC (2005). CrystalClear Rigaku/MSC Inc., The Woodlands, Texas, USA.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Vijayan, N., Bhagavannarayana, G., Balamurugan, N., Babu, R. R., Maurya, K. K., Gopalakrishnan, R. & Ramasamy, P. (2006). J. Cryst. Growth, 293, 318–323.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811031278/hb6340sup1.cif

e-67-o2286-sup1.cif (19.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031278/hb6340Isup2.hkl

e-67-o2286-Isup2.hkl (73KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811031278/hb6340Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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