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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 27;67(Pt 9):o2439. doi: 10.1107/S1600536811033204

N,N′-Dibenzyl-N′′-(2-chloro­acet­yl)-N,N′-dimethyl­phospho­ric triamide

Mehrdad Pourayoubi a,*, Mojtaba Keikha a, Marek Nečas b
PMCID: PMC3200640  PMID: 22059012

Abstract

In the title mol­ecule, C18H23ClN3O2P, the P atom is bonded in a distorted tetra­hedral environment. The P=O and N—H groups are syn with respect to each other. The angles at the tertiary N atoms confirm their sp 2 character. In the crystal, pairs of inter­molecular P=O⋯H—N hydrogen bonds form centrosymmetric dimers.

Related literature

For background to compounds having a C(=O)NHP(=O) skeleton, see: Toghraee et al. (2011); Pourayoubi et al. (2011).graphic file with name e-67-o2439-scheme1.jpg

Experimental

Crystal data

  • C18H23ClN3O2P

  • M r = 379.81

  • Triclinic, Inline graphic

  • a = 9.5891 (8) Å

  • b = 9.9259 (7) Å

  • c = 10.2543 (8) Å

  • α = 89.509 (6)°

  • β = 74.945 (7)°

  • γ = 79.921 (6)°

  • V = 927.27 (12) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.31 mm−1

  • T = 120 K

  • 0.40 × 0.40 × 0.20 mm

Data collection

  • Oxford Diffraction Xcalibur Sapphire2 diffractometer

  • Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) T min = 0.983, T max = 1.000

  • 5838 measured reflections

  • 3253 independent reflections

  • 2594 reflections with I > 2σ(I)

  • R int = 0.016

Refinement

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.083

  • S = 1.06

  • 3253 reflections

  • 232 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.25 e Å−3

  • Δρmin = −0.37 e Å−3

Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell refinement: CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: enCIFer (Allen et al., 2004).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033204/lh5303sup1.cif

e-67-o2439-sup1.cif (27KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033204/lh5303Isup2.hkl

e-67-o2439-Isup2.hkl (159.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯O1i 0.773 (18) 2.037 (19) 2.795 (2) 167.1 (19)

Symmetry code: (i) Inline graphic.

Acknowledgments

Support of this investigation by Ferdowsi University of Mashhad is gratefully acknowledged.

supplementary crystallographic information

Comment

The structure determination of the title compound was performed as part of a project in our laboratory on the synthesis of new phosphoramidates with formula RC(O)NHP(O)[NR'R"]2 (Toghraee et al., 2011). The molecular structure of the title compound is shown in Fig. 1. The P1—N2 and P1—N3 bonds are shorter than the P1—N1 bond. The sp2 character of the tertiary N atoms is indicated by the angles around N2 and N3. The C1—N1—P1 angle is the most distorted from the expected 120° (in terms of sp2 hybridization). The P═O bond length is standard for this type of phosphoramidate compounds (Pourayoubi et al., 2011). The hydrogen atom of the C(═O)NHP(═O) group is involved in an intermolecular –P═O···H—N– hydrogen bond (Table 1). Pair of this type of hydrogen bond forms centrosymmetric dimer which is the usual H-bond pattern for compounds with the general formula RC(O)NHP(O)[NR'R"]2, where R' and R" ≠ H, in the case of syn orientation of P═O versus N—H (Toghraee et al., 2011).

Experimental

Synthesis of CH2ClC(O)NHP(O)Cl2: The reaction of phosphorus pentachloride (20 mmol) and 2-chloroacetamide (20 mmol) in dry benzene (40 ml) at 353 K (3 h) and then the treatment of formic acid 85% (20 mmol) at room temperature leads to the formation of CH2ClC(O)NHP(O)Cl2 as solid product.

Synthesis of title compound: To a solution of (3.47 mmol) CH2ClC(O)NHP(O)Cl2 in CHCl3 (25 ml), a solution of N-methylbenzylamine (13.88 mmol) in CHCl3 (5 ml) was added dropwise at 273 K. After 6 h of stirring, the solvent was evaporated in vacuum. The solid was washed with distilled water. Single crystals were obtained from a solution of the title compound in chloroform and n-heptane after slow evaporation at room temperature. IR (KBr, cm-1): 3116, 2920, 1728, 1494, 1341, 1193, 1011, 949, 867, 800, 743, 695.

Refinement

All carbon bound H atoms were placed in calculated positions and were refined as riding with their Uiso set to either 1.2Ueq or 1.5Ueq (methyl) of the respective carrier atoms. The N bound H atom was located in a difference Fourier map and refined isotropically.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with ellipsoids shown at the 50% probability level.

Crystal data

C18H23ClN3O2P Z = 2
Mr = 379.81 F(000) = 400
Triclinic, P1 Dx = 1.360 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 9.5891 (8) Å Cell parameters from 3547 reflections
b = 9.9259 (7) Å θ = 3.1–27.6°
c = 10.2543 (8) Å µ = 0.31 mm1
α = 89.509 (6)° T = 120 K
β = 74.945 (7)° Plate, colorless
γ = 79.921 (6)° 0.40 × 0.40 × 0.20 mm
V = 927.27 (12) Å3

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer 3253 independent reflections
Radiation source: Enhance (Mo) X-ray Source 2594 reflections with I > 2σ(I)
graphite Rint = 0.016
Detector resolution: 8.4353 pixels mm-1 θmax = 25.0°, θmin = 3.1°
ω scans h = −11→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) k = −11→10
Tmin = 0.983, Tmax = 1.000 l = −12→11
5838 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0449P)2 + 0.0312P] where P = (Fo2 + 2Fc2)/3
3253 reflections (Δ/σ)max < 0.001
232 parameters Δρmax = 0.25 e Å3
0 restraints Δρmin = −0.37 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.35277 (5) 0.03423 (5) 0.36846 (5) 0.02726 (14)
P1 0.73295 (5) 0.38427 (4) 0.38957 (5) 0.01865 (13)
O1 0.68787 (12) 0.51744 (12) 0.46676 (12) 0.0219 (3)
O2 0.64902 (13) 0.10825 (13) 0.30353 (13) 0.0287 (3)
N1 0.58216 (17) 0.31087 (16) 0.42742 (16) 0.0201 (4)
N2 0.78048 (15) 0.38421 (15) 0.22483 (14) 0.0219 (3)
N3 0.87044 (15) 0.29050 (14) 0.43213 (15) 0.0216 (3)
C1 0.55954 (19) 0.18865 (18) 0.38376 (18) 0.0205 (4)
C2 0.40604 (18) 0.16286 (18) 0.45401 (18) 0.0217 (4)
H2A 0.3347 0.2491 0.4595 0.026*
H2B 0.4035 0.1350 0.5474 0.026*
C3 0.9309 (2) 0.3970 (2) 0.15080 (19) 0.0318 (5)
H3A 0.9552 0.3517 0.0611 0.048*
H3B 0.9999 0.3536 0.2009 0.048*
H3C 0.9378 0.4941 0.1410 0.048*
C4 0.6704 (2) 0.42144 (19) 0.14777 (19) 0.0275 (5)
H4A 0.5718 0.4206 0.2087 0.033*
H4B 0.6879 0.3508 0.0750 0.033*
C5 0.67105 (19) 0.55997 (18) 0.08528 (18) 0.0220 (4)
C6 0.6768 (2) 0.5718 (2) −0.05137 (19) 0.0279 (4)
H6A 0.6827 0.4925 −0.1052 0.033*
C7 0.6740 (2) 0.6988 (2) −0.1093 (2) 0.0298 (5)
H7A 0.6778 0.7057 −0.2026 0.036*
C8 0.6658 (2) 0.8148 (2) −0.0331 (2) 0.0292 (5)
H8A 0.6639 0.9014 −0.0735 0.035*
C9 0.6604 (2) 0.80430 (19) 0.1031 (2) 0.0292 (5)
H9A 0.6551 0.8838 0.1564 0.035*
C10 0.6627 (2) 0.67757 (19) 0.16120 (19) 0.0256 (4)
H10A 0.6585 0.6711 0.2546 0.031*
C11 0.9385 (2) 0.15360 (18) 0.37333 (19) 0.0292 (5)
H11A 1.0446 0.1490 0.3388 0.044*
H11B 0.8972 0.1342 0.2990 0.044*
H11C 0.9193 0.0858 0.4427 0.044*
C12 0.9306 (2) 0.33736 (19) 0.53760 (19) 0.0259 (4)
H12A 0.8888 0.4355 0.5596 0.031*
H12B 1.0381 0.3295 0.5013 0.031*
C13 0.90090 (19) 0.25971 (17) 0.66624 (18) 0.0224 (4)
C14 0.7603 (2) 0.23941 (18) 0.73019 (19) 0.0250 (4)
H14A 0.6822 0.2705 0.6901 0.030*
C15 0.7324 (2) 0.1745 (2) 0.85159 (19) 0.0296 (5)
H15A 0.6353 0.1621 0.8946 0.035*
C16 0.8448 (2) 0.12755 (19) 0.9108 (2) 0.0318 (5)
H16A 0.8254 0.0829 0.9943 0.038*
C17 0.9843 (2) 0.1458 (2) 0.8484 (2) 0.0369 (5)
H17A 1.0621 0.1133 0.8884 0.044*
C18 1.0130 (2) 0.2115 (2) 0.7269 (2) 0.0316 (5)
H18A 1.1103 0.2237 0.6846 0.038*
H1N 0.512 (2) 0.359 (2) 0.4672 (18) 0.022 (6)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0285 (3) 0.0242 (3) 0.0337 (3) −0.0101 (2) −0.0129 (2) 0.0023 (2)
P1 0.0146 (2) 0.0162 (2) 0.0238 (3) −0.00197 (18) −0.00340 (19) 0.00312 (19)
O1 0.0177 (6) 0.0183 (7) 0.0288 (7) −0.0027 (5) −0.0051 (5) 0.0008 (5)
O2 0.0228 (7) 0.0233 (7) 0.0354 (8) −0.0023 (6) −0.0007 (6) −0.0064 (6)
N1 0.0138 (8) 0.0174 (8) 0.0251 (9) −0.0002 (7) −0.0001 (7) −0.0008 (7)
N2 0.0179 (8) 0.0227 (8) 0.0231 (9) −0.0024 (6) −0.0027 (7) 0.0048 (7)
N3 0.0183 (8) 0.0197 (8) 0.0257 (9) 0.0001 (6) −0.0065 (7) 0.0025 (7)
C1 0.0223 (10) 0.0184 (9) 0.0220 (10) −0.0026 (8) −0.0089 (8) 0.0037 (8)
C2 0.0212 (9) 0.0183 (9) 0.0262 (10) −0.0055 (8) −0.0058 (8) −0.0006 (8)
C3 0.0243 (10) 0.0355 (12) 0.0280 (11) −0.0028 (9) 0.0045 (9) 0.0054 (9)
C4 0.0355 (11) 0.0262 (11) 0.0250 (11) −0.0104 (9) −0.0123 (9) 0.0041 (8)
C5 0.0189 (9) 0.0246 (10) 0.0247 (10) −0.0065 (8) −0.0079 (8) 0.0055 (8)
C6 0.0298 (11) 0.0282 (11) 0.0286 (11) −0.0089 (9) −0.0105 (9) 0.0022 (9)
C7 0.0293 (11) 0.0388 (12) 0.0250 (11) −0.0118 (9) −0.0102 (9) 0.0123 (9)
C8 0.0244 (10) 0.0255 (11) 0.0408 (12) −0.0080 (8) −0.0122 (9) 0.0145 (9)
C9 0.0256 (10) 0.0230 (10) 0.0394 (12) −0.0051 (8) −0.0089 (9) 0.0007 (9)
C10 0.0265 (10) 0.0292 (11) 0.0228 (10) −0.0071 (8) −0.0083 (8) 0.0046 (8)
C11 0.0225 (10) 0.0228 (10) 0.0387 (12) 0.0046 (8) −0.0074 (9) 0.0007 (9)
C12 0.0184 (9) 0.0256 (10) 0.0366 (12) −0.0074 (8) −0.0099 (9) 0.0056 (9)
C13 0.0228 (9) 0.0163 (9) 0.0299 (11) −0.0035 (8) −0.0100 (8) −0.0027 (8)
C14 0.0232 (10) 0.0232 (10) 0.0320 (11) −0.0049 (8) −0.0125 (9) 0.0010 (9)
C15 0.0289 (11) 0.0309 (11) 0.0315 (12) −0.0121 (9) −0.0079 (9) 0.0009 (9)
C16 0.0416 (12) 0.0290 (11) 0.0285 (11) −0.0089 (9) −0.0140 (10) 0.0039 (9)
C17 0.0339 (12) 0.0396 (13) 0.0404 (13) 0.0013 (10) −0.0205 (10) 0.0046 (10)
C18 0.0217 (10) 0.0382 (12) 0.0363 (12) −0.0041 (9) −0.0109 (9) 0.0037 (10)

Geometric parameters (Å, °)

Cl1—C2 1.7723 (17) C7—C8 1.376 (3)
P1—O1 1.4836 (12) C7—H7A 0.9500
P1—N3 1.6302 (14) C8—C9 1.388 (3)
P1—N2 1.6313 (15) C8—H8A 0.9500
P1—N1 1.6866 (15) C9—C10 1.387 (3)
O2—C1 1.206 (2) C9—H9A 0.9500
N1—C1 1.368 (2) C10—H10A 0.9500
N1—H1N 0.773 (18) C11—H11A 0.9800
N2—C3 1.472 (2) C11—H11B 0.9800
N2—C4 1.472 (2) C11—H11C 0.9800
N3—C11 1.461 (2) C12—C13 1.510 (2)
N3—C12 1.465 (2) C12—H12A 0.9900
C1—C2 1.526 (2) C12—H12B 0.9900
C2—H2A 0.9900 C13—C14 1.386 (2)
C2—H2B 0.9900 C13—C18 1.390 (3)
C3—H3A 0.9800 C14—C15 1.382 (2)
C3—H3B 0.9800 C14—H14A 0.9500
C3—H3C 0.9800 C15—C16 1.381 (3)
C4—C5 1.512 (2) C15—H15A 0.9500
C4—H4A 0.9900 C16—C17 1.367 (3)
C4—H4B 0.9900 C16—H16A 0.9500
C5—C10 1.388 (2) C17—C18 1.387 (3)
C5—C6 1.393 (2) C17—H17A 0.9500
C6—C7 1.388 (3) C18—H18A 0.9500
C6—H6A 0.9500
O1—P1—N3 110.79 (7) C8—C7—C6 120.72 (18)
O1—P1—N2 118.78 (7) C8—C7—H7A 119.6
N3—P1—N2 105.79 (8) C6—C7—H7A 119.6
O1—P1—N1 105.09 (7) C7—C8—C9 119.47 (17)
N3—P1—N1 111.96 (8) C7—C8—H8A 120.3
N2—P1—N1 104.33 (8) C9—C8—H8A 120.3
C1—N1—P1 130.67 (14) C10—C9—C8 119.86 (18)
C1—N1—H1N 114.7 (14) C10—C9—H9A 120.1
P1—N1—H1N 113.9 (14) C8—C9—H9A 120.1
C3—N2—C4 114.46 (15) C9—C10—C5 121.12 (18)
C3—N2—P1 120.68 (13) C9—C10—H10A 119.4
C4—N2—P1 121.30 (12) C5—C10—H10A 119.4
C11—N3—C12 115.28 (14) N3—C11—H11A 109.5
C11—N3—P1 123.34 (12) N3—C11—H11B 109.5
C12—N3—P1 121.34 (12) H11A—C11—H11B 109.5
O2—C1—N1 125.44 (16) N3—C11—H11C 109.5
O2—C1—C2 123.36 (15) H11A—C11—H11C 109.5
N1—C1—C2 111.16 (15) H11B—C11—H11C 109.5
C1—C2—Cl1 112.44 (12) N3—C12—C13 114.54 (14)
C1—C2—H2A 109.1 N3—C12—H12A 108.6
Cl1—C2—H2A 109.1 C13—C12—H12A 108.6
C1—C2—H2B 109.1 N3—C12—H12B 108.6
Cl1—C2—H2B 109.1 C13—C12—H12B 108.6
H2A—C2—H2B 107.8 H12A—C12—H12B 107.6
N2—C3—H3A 109.5 C14—C13—C18 118.12 (18)
N2—C3—H3B 109.5 C14—C13—C12 121.04 (16)
H3A—C3—H3B 109.5 C18—C13—C12 120.79 (16)
N2—C3—H3C 109.5 C15—C14—C13 120.82 (17)
H3A—C3—H3C 109.5 C15—C14—H14A 119.6
H3B—C3—H3C 109.5 C13—C14—H14A 119.6
N2—C4—C5 114.34 (14) C16—C15—C14 120.40 (18)
N2—C4—H4A 108.7 C16—C15—H15A 119.8
C5—C4—H4A 108.7 C14—C15—H15A 119.8
N2—C4—H4B 108.7 C17—C16—C15 119.44 (19)
C5—C4—H4B 108.7 C17—C16—H16A 120.3
H4A—C4—H4B 107.6 C15—C16—H16A 120.3
C10—C5—C6 118.48 (16) C16—C17—C18 120.46 (18)
C10—C5—C4 121.77 (16) C16—C17—H17A 119.8
C6—C5—C4 119.73 (17) C18—C17—H17A 119.8
C7—C6—C5 120.34 (18) C17—C18—C13 120.75 (18)
C7—C6—H6A 119.8 C17—C18—H18A 119.6
C5—C6—H6A 119.8 C13—C18—H18A 119.6
O1—P1—N1—C1 178.95 (16) N2—C4—C5—C6 129.08 (17)
N3—P1—N1—C1 −60.70 (18) C10—C5—C6—C7 −0.1 (3)
N2—P1—N1—C1 53.24 (18) C4—C5—C6—C7 178.50 (17)
O1—P1—N2—C3 83.81 (15) C5—C6—C7—C8 0.1 (3)
N3—P1—N2—C3 −41.38 (15) C6—C7—C8—C9 0.0 (3)
N1—P1—N2—C3 −159.63 (13) C7—C8—C9—C10 −0.3 (3)
O1—P1—N2—C4 −73.72 (15) C8—C9—C10—C5 0.3 (3)
N3—P1—N2—C4 161.09 (13) C6—C5—C10—C9 −0.1 (3)
N1—P1—N2—C4 42.84 (15) C4—C5—C10—C9 −178.68 (17)
O1—P1—N3—C11 179.82 (13) C11—N3—C12—C13 −67.5 (2)
N2—P1—N3—C11 −50.20 (15) P1—N3—C12—C13 110.20 (16)
N1—P1—N3—C11 62.85 (15) N3—C12—C13—C14 −50.5 (2)
O1—P1—N3—C12 2.28 (15) N3—C12—C13—C18 132.22 (18)
N2—P1—N3—C12 132.27 (13) C18—C13—C14—C15 0.8 (3)
N1—P1—N3—C12 −114.68 (13) C12—C13—C14—C15 −176.61 (16)
P1—N1—C1—O2 −1.4 (3) C13—C14—C15—C16 −0.6 (3)
P1—N1—C1—C2 176.42 (13) C14—C15—C16—C17 0.0 (3)
O2—C1—C2—Cl1 −19.1 (2) C15—C16—C17—C18 0.3 (3)
N1—C1—C2—Cl1 162.99 (12) C16—C17—C18—C13 −0.1 (3)
C3—N2—C4—C5 −51.7 (2) C14—C13—C18—C17 −0.4 (3)
P1—N2—C4—C5 107.18 (16) C12—C13—C18—C17 176.96 (18)
N2—C4—C5—C10 −52.4 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1N···O1i 0.773 (18) 2.037 (19) 2.795 (2) 167.1 (19)

Symmetry codes: (i) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5303).

References

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  3. Oxford Diffraction (2009). CrysAlis CCD and CrysAlis RED Oxford Diffraction Ltd, Yarnton, England.
  4. Pourayoubi, M., Tarahhomi, A., Saneei, A., Rheingold, A. L. & Golen, J. A. (2011). Acta Cryst. C67, o265–o272. [DOI] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033204/lh5303sup1.cif

e-67-o2439-sup1.cif (27KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033204/lh5303Isup2.hkl

e-67-o2439-Isup2.hkl (159.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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