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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 27;67(Pt 9):o2512. doi: 10.1107/S1600536811034507

Diphenyl [(S)-1-phenylpropanamido]­phosphate

Fahimeh Sabbaghi a,*, Mehrdad Pourayoubi b, Monireh Negari b, Marek Nečas c
PMCID: PMC3200690  PMID: 22064755

Abstract

The title compound, C21H22NO3P, was synthesized from the reaction of (C6H5O)2P(O)(Cl) and S-1-phenyl­propyl­amine (1:2 mole ratio) at 273 K, followed by removal of the S-1-phenyl­propyl­amine hydro­chloride by-product by dissolving in H2O. The P atom is located in a distorted tetra­hedral environment. The bond angles at the P atom vary from 99.51 (12) to 116.68 (12)°. The sp 2 character of the N atom is reflected by the C—N—P angle [120.9 (2)°]. The P=O group and the N—H unit adopt an anti orientation with respect to one another. In the crystal, adjacent mol­ecules are linked via N—H⋯O(P) hydrogen bonds into a one-dimensional arrangement running parallel to the a axis.

Related literature

For background literature on phospho­ramidates having a C(=O)NHP(=O) skeleton, and the hydrogen-bond patterns and strengths, see: Toghraee et al. (2011); Pourayoubi et al. (2011). For a related phospho­ramidate with a P(=O)(O)2(N) skeleton, and its bond lengths and angles, see: Pourayoubi et al. (2010).graphic file with name e-67-o2512-scheme1.jpg

Experimental

Crystal data

  • C21H22NO3P

  • M r = 367.37

  • Orthorhombic, Inline graphic

  • a = 5.4853 (3) Å

  • b = 8.1450 (11) Å

  • c = 41.162 (4) Å

  • V = 1839.0 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.17 mm−1

  • T = 120 K

  • 0.40 × 0.20 × 0.20 mm

Data collection

  • Oxford Diffraction Xcalibur diffractometer with a Sapphire2 (large Be window) detector

  • Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) T min = 0.981, T max = 1.000

  • 4914 measured reflections

  • 3000 independent reflections

  • 2404 reflections with I > 2σ(I)

  • R int = 0.029

Refinement

  • R[F 2 > 2σ(F 2)] = 0.052

  • wR(F 2) = 0.089

  • S = 1.07

  • 3000 reflections

  • 239 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.41 e Å−3

  • Δρmin = −0.42 e Å−3

  • Absolute structure: Flack (1983), 1052 Friedel pairs

  • Flack parameter: −0.09 (14)

Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell refinement: CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: enCIFer (Allen et al., 2004).

Supplementary Material

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536811034507/dn2713sup1.cif

e-67-o2512-sup1.cif (25.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034507/dn2713Isup2.hkl

e-67-o2512-Isup2.hkl (147.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O3i 0.84 (1) 2.25 (1) 3.077 (3) 167 (3)

Symmetry code: (i) Inline graphic.

Acknowledgments

Support of this investigation by Islamic Azad University, Zanjan Branch, and Ferdowsi University of Mashhad is gratefully acknowledged.

supplementary crystallographic information

Comment

In recently published papers concerning phosphoramidate compounds having a C(═O)NHP(═O)(N)2 skeleton, the hydrogen bonds pattern (Toghraee et al., 2011) and strengths (Pourayoubi et al., 2011) were analyzed. In our continuing interest, we collected the structural data related to a new compound with a P(═O)(O)2(N) skeleton belonging to the phosphoramide family.

The molecular structure of the title compound is given in Fig. 1. The P═O, P—O and P—N bond lengths and the C—N—P and C—O—P angles are standard for this category of phosphoramidate compounds (Pourayoubi et al., 2010).

In the crystal structure, molecules are linked via N—H···O(P) hydrogen bonds into extended chains running parallel to the a axis (Table 1, Fig. 2).

Experimental

To a solution of (C6H5O)2P(O)Cl in chloroform, a solution of S-1-phenylpropylamine (1:2 mole ratio) in chloroform was added at 273 K. After 4 h of stirring, the solvent was removed and the obtained solid was washed with distilled water. Single crystals were obtained from a solution of the title compound in CHCl3/n-C7H16 after slow evaporation at room temperature.

Refinement

All carbon bound H atoms were placed at calculated positions and treated as riding with their Uiso set to either 1.2Ueq or 1.5Ueq (methyl) of the respective carrier atoms; in addition, the methyl H atoms were allowed to rotate about the C—C bond. Nitrogen bound H atom was located in a difference Fourier map and its coordinates were refined using restraint on the N—H distance (0.85 (1) Å) with Uiso = 1.5Ueq(N).

Figures

Fig. 1.

Fig. 1.

An ORTEP style plot and atom labeling scheme for the title compound. Displacement ellipsoids are given at 50% probability level and H atoms are drawn as small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

Part of the crystal packing of the title compound with the hydrogen bonds shown as dotted lines (the C—H hydrogen atoms are omitted for clarity).

Crystal data

C21H22NO3P F(000) = 776
Mr = 367.37 Dx = 1.327 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 1550 reflections
a = 5.4853 (3) Å θ = 3.2–27.6°
b = 8.1450 (11) Å µ = 0.17 mm1
c = 41.162 (4) Å T = 120 K
V = 1839.0 (3) Å3 Plate, colorless
Z = 4 0.40 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire2 (large Be window) detector 3000 independent reflections
Radiation source: Enhance (Mo) X-ray Source 2404 reflections with I > 2σ(I)
graphite Rint = 0.029
Detector resolution: 8.4353 pixels mm-1 θmax = 25.0°, θmin = 3.2°
ω scan h = −5→6
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) k = −9→5
Tmin = 0.981, Tmax = 1.000 l = −48→48
4914 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.089 w = 1/[σ2(Fo2) + (0.0325P)2 + 0.0316P] where P = (Fo2 + 2Fc2)/3
S = 1.07 (Δ/σ)max < 0.001
3000 reflections Δρmax = 0.41 e Å3
239 parameters Δρmin = −0.42 e Å3
1 restraint Absolute structure: Flack (1983), 1052 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: −0.09 (14)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
P1 1.02848 (15) 0.21930 (11) 0.13952 (2) 0.0144 (2)
O1 1.0319 (4) 0.2594 (3) 0.10191 (4) 0.0190 (6)
O2 0.9231 (4) 0.3876 (2) 0.15288 (5) 0.0159 (5)
O3 1.2652 (4) 0.1671 (2) 0.15233 (5) 0.0168 (6)
N1 0.8109 (5) 0.0886 (3) 0.14460 (7) 0.0122 (6)
H1 0.664 (2) 0.118 (3) 0.1438 (7) 0.018*
C1 1.2275 (6) 0.3148 (4) 0.08300 (8) 0.0138 (8)
C2 1.4066 (6) 0.4158 (4) 0.09534 (8) 0.0175 (8)
H2A 1.4062 0.4477 0.1175 0.021*
C3 1.5882 (6) 0.4694 (4) 0.07423 (8) 0.0193 (9)
H3B 1.7151 0.5378 0.0822 0.023*
C4 1.5863 (7) 0.4244 (4) 0.04181 (9) 0.0237 (9)
H4A 1.7092 0.4635 0.0275 0.028*
C5 1.4054 (6) 0.3227 (4) 0.03045 (8) 0.0239 (9)
H5A 1.4044 0.2909 0.0082 0.029*
C6 1.2250 (6) 0.2665 (4) 0.05106 (7) 0.0186 (8)
H6A 1.1010 0.1954 0.0432 0.022*
C7 0.8931 (6) 0.4166 (4) 0.18657 (8) 0.0147 (8)
C8 1.0704 (7) 0.5046 (4) 0.20239 (8) 0.0232 (9)
H8A 1.2141 0.5378 0.1913 0.028*
C9 1.0358 (7) 0.5446 (4) 0.23511 (8) 0.0270 (9)
H9A 1.1575 0.6045 0.2465 0.032*
C10 0.8268 (7) 0.4975 (4) 0.25076 (9) 0.0277 (10)
H10A 0.8030 0.5250 0.2730 0.033*
C11 0.6510 (7) 0.4101 (4) 0.23415 (8) 0.0220 (9)
H11A 0.5062 0.3777 0.2451 0.026*
C12 0.6827 (6) 0.3689 (4) 0.20180 (8) 0.0170 (8)
H12A 0.5611 0.3090 0.1904 0.020*
C13 0.6168 (7) −0.1630 (4) 0.18811 (7) 0.0273 (10)
H13A 0.4918 −0.2374 0.1966 0.041*
H13B 0.5715 −0.0493 0.1930 0.041*
H13C 0.7740 −0.1882 0.1983 0.041*
C14 0.6370 (6) −0.1851 (4) 0.15156 (7) 0.0213 (9)
H14A 0.4814 −0.1515 0.1413 0.026*
H14B 0.6628 −0.3028 0.1467 0.026*
C15 0.8451 (6) −0.0856 (4) 0.13654 (7) 0.0130 (7)
H15A 1.0005 −0.1226 0.1469 0.016*
C16 0.8667 (6) −0.1162 (4) 0.10011 (8) 0.0131 (8)
C17 1.0577 (6) −0.2086 (4) 0.08788 (7) 0.0175 (8)
H17A 1.1767 −0.2512 0.1024 0.021*
C18 1.0790 (6) −0.2405 (4) 0.05478 (8) 0.0211 (9)
H18A 1.2099 −0.3055 0.0468 0.025*
C19 0.9076 (6) −0.1766 (4) 0.03360 (8) 0.0213 (9)
H19A 0.9221 −0.1965 0.0109 0.026*
C20 0.7162 (7) −0.0845 (4) 0.04518 (8) 0.0211 (9)
H20A 0.5981 −0.0413 0.0306 0.025*
C21 0.6966 (6) −0.0549 (4) 0.07836 (8) 0.0178 (9)
H21A 0.5640 0.0086 0.0863 0.021*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
P1 0.0134 (4) 0.0160 (4) 0.0139 (5) −0.0003 (4) −0.0006 (4) −0.0004 (4)
O1 0.0146 (12) 0.0300 (15) 0.0122 (11) −0.0012 (13) 0.0002 (10) 0.0020 (10)
O2 0.0200 (13) 0.0115 (12) 0.0163 (12) 0.0000 (11) −0.0005 (11) −0.0006 (10)
O3 0.0136 (12) 0.0178 (13) 0.0191 (13) −0.0002 (11) −0.0008 (10) −0.0001 (11)
N1 0.0132 (14) 0.0114 (15) 0.0119 (16) 0.0030 (13) −0.0001 (14) −0.0015 (13)
C1 0.0098 (18) 0.013 (2) 0.018 (2) 0.0016 (16) 0.0051 (14) 0.0038 (16)
C2 0.0175 (19) 0.0173 (18) 0.018 (2) 0.0038 (17) 0.0013 (16) −0.0023 (16)
C3 0.0152 (19) 0.0126 (19) 0.030 (2) −0.0028 (17) −0.0017 (17) 0.0017 (17)
C4 0.020 (2) 0.022 (2) 0.029 (2) 0.0019 (18) 0.0120 (18) 0.0046 (19)
C5 0.028 (2) 0.031 (2) 0.0119 (19) 0.0009 (19) 0.0064 (16) −0.0006 (17)
C6 0.0222 (19) 0.018 (2) 0.0157 (19) −0.0053 (18) −0.0017 (16) 0.0002 (16)
C7 0.0164 (19) 0.0115 (18) 0.0162 (19) 0.0029 (17) −0.0031 (16) −0.0003 (16)
C8 0.019 (2) 0.0183 (19) 0.032 (2) −0.0011 (19) 0.0001 (19) −0.0022 (17)
C9 0.027 (2) 0.025 (2) 0.029 (2) 0.000 (2) −0.009 (2) −0.0110 (18)
C10 0.036 (3) 0.030 (2) 0.017 (2) 0.010 (2) −0.007 (2) −0.0079 (19)
C11 0.024 (2) 0.027 (2) 0.015 (2) 0.003 (2) 0.0002 (17) 0.0016 (18)
C12 0.0167 (19) 0.016 (2) 0.019 (2) −0.0012 (17) −0.0067 (16) −0.0012 (16)
C13 0.037 (2) 0.025 (2) 0.020 (2) −0.0053 (19) 0.0051 (18) 0.0021 (18)
C14 0.028 (2) 0.0157 (19) 0.020 (2) −0.0020 (17) −0.0016 (16) −0.0034 (17)
C15 0.0115 (16) 0.0149 (18) 0.0128 (18) 0.0017 (15) −0.0032 (16) 0.0010 (17)
C16 0.0141 (18) 0.0083 (18) 0.017 (2) −0.0031 (16) −0.0005 (15) −0.0012 (15)
C17 0.0180 (18) 0.0196 (18) 0.0148 (18) −0.0021 (19) −0.0024 (15) −0.0027 (17)
C18 0.019 (2) 0.019 (2) 0.025 (2) −0.0018 (18) 0.0042 (16) −0.0069 (17)
C19 0.033 (2) 0.021 (2) 0.0102 (18) −0.0100 (18) 0.0022 (16) −0.0018 (16)
C20 0.029 (2) 0.020 (2) 0.014 (2) −0.0004 (19) −0.0041 (18) 0.0012 (17)
C21 0.021 (2) 0.016 (2) 0.016 (2) 0.0027 (17) −0.0030 (17) −0.0042 (16)

Geometric parameters (Å, °)

P1—O3 1.465 (2) C10—C11 1.380 (5)
P1—O1 1.582 (2) C10—H10A 0.9500
P1—O2 1.586 (2) C11—C12 1.384 (4)
P1—N1 1.613 (3) C11—H11A 0.9500
O1—C1 1.400 (3) C12—H12A 0.9500
O2—C7 1.417 (4) C13—C14 1.519 (4)
N1—C15 1.469 (4) C13—H13A 0.9800
N1—H1 0.838 (10) C13—H13B 0.9800
C1—C6 1.372 (4) C13—H13C 0.9800
C1—C2 1.378 (4) C14—C15 1.530 (4)
C2—C3 1.392 (4) C14—H14A 0.9900
C2—H2A 0.9500 C14—H14B 0.9900
C3—C4 1.384 (4) C15—C16 1.525 (4)
C3—H3B 0.9500 C15—H15A 1.0000
C4—C5 1.374 (4) C16—C17 1.385 (4)
C4—H4A 0.9500 C16—C21 1.386 (4)
C5—C6 1.382 (4) C17—C18 1.392 (4)
C5—H5A 0.9500 C17—H17A 0.9500
C6—H6A 0.9500 C18—C19 1.384 (4)
C7—C12 1.370 (4) C18—H18A 0.9500
C7—C8 1.373 (4) C19—C20 1.376 (5)
C8—C9 1.398 (4) C19—H19A 0.9500
C8—H8A 0.9500 C20—C21 1.391 (4)
C9—C10 1.370 (5) C20—H20A 0.9500
C9—H9A 0.9500 C21—H21A 0.9500
O3—P1—O1 113.67 (13) C10—C11—H11A 119.5
O3—P1—O2 116.68 (12) C12—C11—H11A 119.5
O1—P1—O2 99.51 (12) C7—C12—C11 118.5 (3)
O3—P1—N1 114.72 (13) C7—C12—H12A 120.7
O1—P1—N1 105.78 (13) C11—C12—H12A 120.7
O2—P1—N1 104.81 (13) C14—C13—H13A 109.5
C1—O1—P1 128.3 (2) C14—C13—H13B 109.5
C7—O2—P1 121.73 (19) H13A—C13—H13B 109.5
C15—N1—P1 120.9 (2) C14—C13—H13C 109.5
C15—N1—H1 113 (2) H13A—C13—H13C 109.5
P1—N1—H1 121 (2) H13B—C13—H13C 109.5
C6—C1—C2 122.1 (3) C13—C14—C15 113.1 (3)
C6—C1—O1 115.6 (3) C13—C14—H14A 109.0
C2—C1—O1 122.3 (3) C15—C14—H14A 109.0
C1—C2—C3 117.9 (3) C13—C14—H14B 109.0
C1—C2—H2A 121.1 C15—C14—H14B 109.0
C3—C2—H2A 121.1 H14A—C14—H14B 107.8
C4—C3—C2 120.9 (3) N1—C15—C16 113.0 (3)
C4—C3—H3B 119.6 N1—C15—C14 109.0 (3)
C2—C3—H3B 119.6 C16—C15—C14 111.6 (3)
C5—C4—C3 119.6 (3) N1—C15—H15A 107.7
C5—C4—H4A 120.2 C16—C15—H15A 107.7
C3—C4—H4A 120.2 C14—C15—H15A 107.7
C4—C5—C6 120.5 (3) C17—C16—C21 118.0 (3)
C4—C5—H5A 119.7 C17—C16—C15 120.3 (3)
C6—C5—H5A 119.7 C21—C16—C15 121.6 (3)
C1—C6—C5 119.1 (3) C16—C17—C18 121.4 (3)
C1—C6—H6A 120.5 C16—C17—H17A 119.3
C5—C6—H6A 120.5 C18—C17—H17A 119.3
C12—C7—C8 121.9 (3) C19—C18—C17 119.3 (3)
C12—C7—O2 119.9 (3) C19—C18—H18A 120.3
C8—C7—O2 118.0 (3) C17—C18—H18A 120.3
C7—C8—C9 118.8 (4) C20—C19—C18 120.4 (3)
C7—C8—H8A 120.6 C20—C19—H19A 119.8
C9—C8—H8A 120.6 C18—C19—H19A 119.8
C10—C9—C8 120.1 (4) C19—C20—C21 119.6 (3)
C10—C9—H9A 120.0 C19—C20—H20A 120.2
C8—C9—H9A 120.0 C21—C20—H20A 120.2
C9—C10—C11 119.7 (3) C16—C21—C20 121.3 (3)
C9—C10—H10A 120.1 C16—C21—H21A 119.3
C11—C10—H10A 120.1 C20—C21—H21A 119.3
C10—C11—C12 120.9 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···O3i 0.84 (1) 2.25 (1) 3.077 (3) 167 (3)

Symmetry codes: (i) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: DN2713).

References

  1. Allen, F. H., Johnson, O., Shields, G. P., Smith, B. R. & Towler, M. (2004). J. Appl. Cryst. 37, 335–338.
  2. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  3. Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
  4. Oxford Diffraction (2009). CrysAlis CCD and CrysAlis RED Oxford Diffraction Ltd, Yarnton, England.
  5. Pourayoubi, M., Eshtiagh-Hosseini, H., Zargaran, P. & Divjakovic, V. (2010). Acta Cryst. E66, o204. [DOI] [PMC free article] [PubMed]
  6. Pourayoubi, M., Tarahhomi, A., Saneei, A., Rheingold, A. L. & Golen, J. A. (2011). Acta Cryst. C67, o265–o272. [DOI] [PubMed]
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Toghraee, M., Pourayoubi, M. & Divjakovic, V. (2011). Polyhedron, 30, 1680–1690.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536811034507/dn2713sup1.cif

e-67-o2512-sup1.cif (25.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034507/dn2713Isup2.hkl

e-67-o2512-Isup2.hkl (147.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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