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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 17;67(Pt 9):m1263. doi: 10.1107/S1600536811032697

catena-Poly[[bis­(nitrato-κO)cadmium]bis­[μ-1,4-bis­(pyridin-3-yl­meth­oxy)benzene-κ2 N:N′]]

Shuang Zhang a, Ying-Hui Yu a,b, Ying Liu b, Guang-Feng Hou a,b, Jin-Sheng Gao a,b,*
PMCID: PMC3200741  PMID: 22064823

Abstract

In the title compound, [Cd(NO3)2(C18H16N2O2)2]n, the six-coordinated CdII ion is located on an inversion center and has a distorted octa­hedral environment defined by four N atoms from four 1,4-bis­(pyridin-3-ylmeth­oxy)benzene ligands and two O atoms from two nitrate anions. The ligands link the CdII ions into a ribbon-like structure running along [201]. One O atom of the nitrate anion is disordered over two positions with site-occupancy factors of 0.59 (2) and 0.41 (2).

Related literature

For the synthesis and background to metal complexes with pyridyl-based aromatic ligands, see: Liu et al. (2010a ,b ). For isotypic compounds, see: Liu et al. (2011); Zou et al. (2011).graphic file with name e-67-m1263-scheme1.jpg

Experimental

Crystal data

  • [Cd(NO3)2(C18H16N2O2)2]

  • M r = 821.08

  • Monoclinic, Inline graphic

  • a = 8.4034 (17) Å

  • b = 16.914 (3) Å

  • c = 13.436 (5) Å

  • β = 114.23 (2)°

  • V = 1741.5 (8) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.70 mm−1

  • T = 293 K

  • 0.20 × 0.19 × 0.17 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.871, T max = 0.890

  • 16413 measured reflections

  • 3952 independent reflections

  • 3277 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.077

  • S = 1.08

  • 3952 reflections

  • 251 parameters

  • 12 restraints

  • H-atom parameters constrained

  • Δρmax = 0.45 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811032697/hy2453sup1.cif

e-67-m1263-sup1.cif (24.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811032697/hy2453Isup2.hkl

e-67-m1263-Isup2.hkl (193.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Cd1—N1 2.3793 (17)
Cd1—N2i 2.3064 (17)
Cd1—O3 2.3778 (17)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank the Project of Innovation Service Platform of Heilongjiang Province (PG09J001) and Heilongjiang University for supporting this work.

supplementary crystallographic information

Comment

The bridging compounds with rigid and flexible pyridyl-containing bidentate or multidentate organic spacers have assembled numerous interesting topology structures by coordination with metals and intermolecular supramolecular interactions. Our group focused attention on study of flexible pyridyl-based aromatic ligands, and obtained some isolated molecules, chain, two- and three-dimensional network structures (Liu et al., 2010a, b). Herein, as a continuing work for pyridyl ligands, we report the synthesis and crystal structure of the title compound, which is a isostructural compound of our previous reports (Liu et al., 2011; Zou et al., 2011).

In the title compound, the CdII ion lies on an inversion center and is six-coordinated in a distorted octahedral geometry defined by four N atoms of the pyridine derivatives and two O atoms of the nitrate anions (Fig. 1, Table 1). One O atom of the nitrate anion has a badly thermal ellipsoid, which is split over two positions with site-occupancy factors of 0.59 (2) and 0.41 (2). In the crystal, ribbon-like structures along [2 0 1] are built up by the N-heterocyclic ligands linking the CdII ions (Fig. 2).

Experimental

The 1,4-bis(pyridin-3-ylmethoxy)benzene ligand was synthesized as the reference method (Liu et al., 2010a). A mixture of 1,4-dihydroxybenzene (1.10 g, 10 mmol), 3-chloromethylpyridine hydrochloride (3.28 g, 20 mmol) and NaOH (1.60 g, 40 mmol) in acetonitrile (50 ml) was refluxed under nitrogen with stirring for 24 h. After cooling to room temperature, the solution was filtered and the residue was washed with acetonitrile for several times. The mixed filtrate was dropped into a 300 ml water solution, giving a powder crude product. A total of 2.51 g (yield 86%) pure product was obtained by recrystallizing from a mixed solution of 10 ml water and 10 ml methanol. The title compound was synthesized by the reaction of 1,4-bis(pyridin-3-ylmethoxy)benzene (0.29 g, 1.0 mmol) and Cd(NO3)2.4H2O (0.31 g, 1.0 mmol) in a mixed solution of 5 ml water and 5 ml methanol. The mixture was filtered after stirring for about 1 h. The filtate was allowed to stand for 4 d under room temperature to give block-like colorless crystals suitable for X-ray analysis.

Refinement

O5 atom of nitrate is disordered over two positions and the site-occupancy factors were refined to 0.41 (2) for O5 and 0.59 (2) for O5'. The command "isor 0.005 O5 O5" was used to restrain ADP. H atoms bound to C atoms were placed in calculated positions and treated as riding on their parent atoms, with C—H = 0.93 (aromatic) and 0.97 (methylene) Å and with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The structure of the title compound, showing displacement ellipsoids at the 50% probability level. H atoms and disordered O5' atom have been omitted for clarity. [Symmetry codes: (i) -2+x, y, -1+z; (ii) -x, 1-y, -z; (iii) 2-x, 1-y, 1-z; (iv) 2+x, y, 1+z.]

Fig. 2.

Fig. 2.

A packing view of the title compound, showing the ribbon-like structure along [2 0 1].

Crystal data

[Cd(NO3)2(C18H16N2O2)2] F(000) = 836
Mr = 821.08 Dx = 1.566 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 14136 reflections
a = 8.4034 (17) Å θ = 3.3–27.5°
b = 16.914 (3) Å µ = 0.70 mm1
c = 13.436 (5) Å T = 293 K
β = 114.23 (2)° Block, colorless
V = 1741.5 (8) Å3 0.20 × 0.19 × 0.17 mm
Z = 2

Data collection

Rigaku R-AXIS RAPID diffractometer 3952 independent reflections
Radiation source: rotation anode 3277 reflections with I > 2σ(I)
graphite Rint = 0.028
ω scan θmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) h = −8→10
Tmin = 0.871, Tmax = 0.890 k = −21→21
16413 measured reflections l = −17→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0425P)2 + 0.3288P] where P = (Fo2 + 2Fc2)/3
3952 reflections (Δ/σ)max = 0.001
251 parameters Δρmax = 0.45 e Å3
12 restraints Δρmin = −0.30 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Cd1 1.0000 0.5000 0.5000 0.04071 (9)
O1 0.18190 (19) 0.65049 (9) 0.17002 (17) 0.0667 (5)
O2 −0.52415 (19) 0.61347 (9) −0.08007 (16) 0.0643 (5)
O3 1.2330 (2) 0.56597 (9) 0.47758 (15) 0.0567 (4)
O4 1.2207 (3) 0.68782 (11) 0.51540 (19) 0.0791 (6)
O5 1.4627 (9) 0.6264 (6) 0.5848 (14) 0.079 (3) 0.41 (2)
O5' 1.4608 (7) 0.6401 (4) 0.5304 (12) 0.087 (2) 0.59 (2)
N1 0.7748 (2) 0.58067 (10) 0.37477 (14) 0.0411 (4)
N2 −0.9888 (2) 0.57398 (9) −0.35307 (13) 0.0370 (3)
N3 1.3053 (2) 0.62879 (10) 0.51369 (16) 0.0463 (4)
C1 0.8208 (3) 0.63692 (13) 0.32227 (18) 0.0446 (5)
H1 0.9391 0.6463 0.3424 0.054*
C2 0.7023 (3) 0.68165 (14) 0.23999 (18) 0.0469 (5)
H2 0.7401 0.7213 0.2069 0.056*
C3 0.5261 (3) 0.66720 (12) 0.20688 (17) 0.0429 (5)
H3 0.4436 0.6966 0.1509 0.052*
C4 0.4750 (2) 0.60814 (12) 0.25868 (17) 0.0388 (4)
C5 0.6032 (2) 0.56757 (12) 0.34290 (17) 0.0418 (4)
H5 0.5687 0.5291 0.3795 0.050*
C6 0.2865 (3) 0.58475 (13) 0.2223 (2) 0.0509 (6)
H6A 0.2595 0.5404 0.1722 0.061*
H6B 0.2640 0.5691 0.2848 0.061*
C7 0.0068 (2) 0.63792 (12) 0.10806 (19) 0.0442 (5)
C8 −0.0774 (3) 0.56579 (13) 0.0975 (2) 0.0517 (6)
H8 −0.0150 0.5214 0.1336 0.062*
C9 −0.2549 (3) 0.56010 (13) 0.0329 (2) 0.0507 (6)
H9 −0.3113 0.5117 0.0251 0.061*
C10 −0.3483 (2) 0.62632 (12) −0.01978 (18) 0.0433 (5)
C11 −0.2652 (2) 0.69830 (11) −0.00903 (17) 0.0402 (4)
H11 −0.3282 0.7428 −0.0441 0.048*
C12 −0.0864 (2) 0.70393 (12) 0.05461 (18) 0.0415 (4)
H12 −0.0297 0.7521 0.0612 0.050*
C13 −0.6311 (3) 0.67955 (12) −0.12538 (19) 0.0476 (5)
H13A −0.5876 0.7096 −0.1704 0.057*
H13B −0.6339 0.7137 −0.0681 0.057*
C14 −0.8113 (2) 0.64770 (11) −0.19354 (16) 0.0376 (4)
C15 −0.9549 (3) 0.66096 (13) −0.17100 (19) 0.0472 (5)
H15 −0.9444 0.6897 −0.1096 0.057*
C16 −1.1153 (3) 0.63084 (13) −0.2412 (2) 0.0484 (5)
H16 −1.2136 0.6390 −0.2272 0.058*
C17 −1.1282 (2) 0.58893 (11) −0.33157 (18) 0.0409 (4)
H17 −1.2369 0.5703 −0.3794 0.049*
C18 −0.8348 (2) 0.60285 (12) −0.28455 (16) 0.0385 (4)
H18 −0.7377 0.5922 −0.2989 0.046*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cd1 0.02736 (11) 0.04911 (14) 0.03548 (12) 0.00624 (8) 0.00257 (8) −0.00838 (8)
O1 0.0250 (7) 0.0479 (8) 0.1035 (15) 0.0012 (6) 0.0023 (8) 0.0162 (9)
O2 0.0304 (8) 0.0442 (8) 0.0853 (13) −0.0014 (6) −0.0098 (8) 0.0059 (8)
O3 0.0497 (9) 0.0542 (9) 0.0639 (11) −0.0053 (7) 0.0210 (8) −0.0034 (8)
O4 0.0698 (12) 0.0553 (10) 0.1048 (17) 0.0078 (9) 0.0284 (12) −0.0021 (10)
O5 0.036 (3) 0.091 (4) 0.090 (5) −0.005 (2) 0.005 (3) −0.006 (3)
O5' 0.0406 (19) 0.095 (3) 0.120 (5) −0.0096 (17) 0.029 (3) 0.005 (3)
N1 0.0270 (8) 0.0488 (9) 0.0400 (9) 0.0048 (7) 0.0061 (7) −0.0008 (7)
N2 0.0265 (7) 0.0418 (8) 0.0360 (9) 0.0024 (6) 0.0060 (6) −0.0032 (7)
N3 0.0334 (9) 0.0447 (10) 0.0595 (12) 0.0035 (8) 0.0179 (8) 0.0089 (8)
C1 0.0283 (9) 0.0557 (12) 0.0463 (12) −0.0028 (9) 0.0117 (9) −0.0069 (9)
C2 0.0390 (11) 0.0551 (12) 0.0461 (12) −0.0068 (9) 0.0170 (9) 0.0028 (9)
C3 0.0364 (10) 0.0489 (11) 0.0354 (10) 0.0022 (9) 0.0065 (8) 0.0043 (8)
C4 0.0269 (9) 0.0439 (10) 0.0389 (11) 0.0026 (8) 0.0066 (8) 0.0017 (8)
C5 0.0280 (9) 0.0469 (11) 0.0442 (11) 0.0037 (8) 0.0083 (8) 0.0063 (9)
C6 0.0262 (9) 0.0529 (12) 0.0623 (15) 0.0023 (9) 0.0066 (9) 0.0142 (10)
C7 0.0232 (9) 0.0484 (11) 0.0541 (13) 0.0008 (8) 0.0087 (9) 0.0058 (9)
C8 0.0315 (10) 0.0429 (11) 0.0677 (15) 0.0043 (9) 0.0071 (10) 0.0130 (10)
C9 0.0322 (10) 0.0402 (10) 0.0659 (15) −0.0028 (8) 0.0061 (10) 0.0039 (10)
C10 0.0274 (9) 0.0447 (11) 0.0460 (12) 0.0002 (8) 0.0031 (8) −0.0001 (8)
C11 0.0315 (9) 0.0398 (10) 0.0415 (11) 0.0046 (8) 0.0072 (8) 0.0059 (8)
C12 0.0301 (9) 0.0402 (10) 0.0493 (12) −0.0015 (8) 0.0115 (9) 0.0046 (8)
C13 0.0339 (10) 0.0446 (11) 0.0478 (12) 0.0030 (9) 0.0000 (9) −0.0073 (9)
C14 0.0300 (9) 0.0370 (9) 0.0362 (10) 0.0034 (7) 0.0038 (8) −0.0026 (7)
C15 0.0460 (12) 0.0458 (11) 0.0478 (12) 0.0039 (9) 0.0172 (10) −0.0121 (9)
C16 0.0339 (10) 0.0489 (11) 0.0660 (15) 0.0039 (9) 0.0241 (10) −0.0066 (10)
C17 0.0252 (9) 0.0385 (10) 0.0518 (12) 0.0006 (7) 0.0085 (8) −0.0002 (8)
C18 0.0260 (9) 0.0474 (10) 0.0372 (10) 0.0017 (8) 0.0079 (8) −0.0048 (8)

Geometric parameters (Å, °)

Cd1—N1 2.3793 (17) C5—H5 0.9300
Cd1—N2i 2.3064 (17) C6—H6A 0.9700
Cd1—O3 2.3778 (17) C6—H6B 0.9700
O1—C7 1.378 (2) C7—C12 1.383 (3)
O1—C6 1.413 (3) C7—C8 1.388 (3)
O2—C10 1.380 (2) C8—C9 1.388 (3)
O2—C13 1.407 (2) C8—H8 0.9300
O3—N3 1.221 (2) C9—C10 1.384 (3)
O4—N3 1.231 (3) C9—H9 0.9300
O5—O5' 0.761 (9) C10—C11 1.382 (3)
O5—N3 1.275 (7) C11—C12 1.394 (3)
O5'—N3 1.246 (5) C11—H11 0.9300
N1—C1 1.333 (3) C12—H12 0.9300
N1—C5 1.344 (2) C13—C14 1.511 (3)
N2—C18 1.335 (2) C13—H13A 0.9700
N2—C17 1.341 (3) C13—H13B 0.9700
C1—C2 1.372 (3) C14—C15 1.378 (3)
C1—H1 0.9300 C14—C18 1.383 (3)
C2—C3 1.381 (3) C15—C16 1.387 (3)
C2—H2 0.9300 C15—H15 0.9300
C3—C4 1.383 (3) C16—C17 1.371 (3)
C3—H3 0.9300 C16—H16 0.9300
C4—C5 1.382 (3) C17—H17 0.9300
C4—C6 1.506 (3) C18—H18 0.9300
N2ii—Cd1—N2i 180.000 (1) O1—C6—H6A 110.1
N2ii—Cd1—O3iii 96.17 (6) C4—C6—H6A 110.1
N2i—Cd1—O3iii 83.83 (6) O1—C6—H6B 110.1
N2ii—Cd1—O3 83.83 (6) C4—C6—H6B 110.1
N2i—Cd1—O3 96.17 (6) H6A—C6—H6B 108.4
O3iii—Cd1—O3 180.00 (7) O1—C7—C12 115.21 (18)
N2ii—Cd1—N1 87.97 (6) O1—C7—C8 124.79 (18)
N2i—Cd1—N1 92.03 (6) C12—C7—C8 120.00 (18)
O3iii—Cd1—N1 84.33 (6) C9—C8—C7 119.80 (19)
O3—Cd1—N1 95.67 (6) C9—C8—H8 120.1
N2ii—Cd1—N1iii 92.03 (6) C7—C8—H8 120.1
N2i—Cd1—N1iii 87.97 (6) C10—C9—C8 120.14 (19)
O3iii—Cd1—N1iii 95.67 (6) C10—C9—H9 119.9
O3—Cd1—N1iii 84.33 (6) C8—C9—H9 119.9
N1—Cd1—N1iii 180.0 O2—C10—C11 125.03 (18)
C7—O1—C6 118.12 (16) O2—C10—C9 114.74 (18)
C10—O2—C13 117.98 (16) C11—C10—C9 120.22 (18)
N3—O3—Cd1 131.24 (14) C10—C11—C12 119.73 (18)
C1—N1—C5 117.12 (17) C10—C11—H11 120.1
C1—N1—Cd1 117.65 (13) C12—C11—H11 120.1
C5—N1—Cd1 124.68 (14) C7—C12—C11 120.10 (18)
C18—N2—C17 117.90 (17) C7—C12—H12 120.0
C18—N2—Cd1iv 118.42 (13) C11—C12—H12 120.0
C17—N2—Cd1iv 123.67 (13) O2—C13—C14 106.41 (16)
O3—N3—O4 121.06 (19) O2—C13—H13A 110.4
O3—N3—O5' 121.2 (3) C14—C13—H13A 110.4
O4—N3—O5' 116.3 (3) O2—C13—H13B 110.4
O3—N3—O5 117.6 (5) C14—C13—H13B 110.4
O4—N3—O5 116.2 (4) H13A—C13—H13B 108.6
N1—C1—C2 123.18 (19) C15—C14—C18 117.61 (18)
N1—C1—H1 118.4 C15—C14—C13 123.97 (19)
C2—C1—H1 118.4 C18—C14—C13 118.41 (19)
C1—C2—C3 119.3 (2) C14—C15—C16 119.0 (2)
C1—C2—H2 120.3 C14—C15—H15 120.5
C3—C2—H2 120.3 C16—C15—H15 120.5
C2—C3—C4 118.61 (19) C17—C16—C15 119.6 (2)
C2—C3—H3 120.7 C17—C16—H16 120.2
C4—C3—H3 120.7 C15—C16—H16 120.2
C5—C4—C3 118.17 (18) N2—C17—C16 121.99 (18)
C5—C4—C6 119.84 (19) N2—C17—H17 119.0
C3—C4—C6 121.92 (18) C16—C17—H17 119.0
N1—C5—C4 123.56 (19) N2—C18—C14 123.82 (18)
N1—C5—H5 118.2 N2—C18—H18 118.1
C4—C5—H5 118.2 C14—C18—H18 118.1
O1—C6—C4 108.15 (17)

Symmetry codes: (i) x+2, y, z+1; (ii) −x, −y+1, −z; (iii) −x+2, −y+1, −z+1; (iv) x−2, y, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2453).

References

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  2. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  3. Liu, Y., Yan, P.-F., Yu, Y.-H., Hou, G.-F. & Gao, J.-S. (2010a). Cryst. Growth Des. 10, 1559–1568.
  4. Liu, Y., Yan, P.-F., Yu, Y.-H., Hou, G.-F. & Gao, J.-S. (2010b). Inorg. Chem. Commun. 13, 630–632.
  5. Liu, Y., Zhang, H.-S., Hou, G.-F. & Gao, J.-S. (2011). Acta Cryst. E67, m789. [DOI] [PMC free article] [PubMed]
  6. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
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  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811032697/hy2453sup1.cif

e-67-m1263-sup1.cif (24.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811032697/hy2453Isup2.hkl

e-67-m1263-Isup2.hkl (193.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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