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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 27;67(Pt 9):o2500. doi: 10.1107/S1600536811034519

2,4-Diiodo-6-{[4-(morpholin-4-yl)phenyl]iminomethyl}phenol

K Manvizhi a, G Chakkaravarthi b,*, G Anbalagan c, G Rajagopal d,*
PMCID: PMC3200745  PMID: 22064908

Abstract

In the title compound, C17H16I2N2O2, the two aromatic rings are almost coplanar [dihedral angle 2.57 (15)°]. The morpholine ring adopts a chair conformation. The mol­ecular structure is stabilized by an O—H⋯N hydrogen bond and the crystal packing exhibits weak inter­molecular C—H⋯O and π–π [centroid-to-centroid distances 3.663 (3)-4.073 (3) Å] inter­actions.

Related literature

For the biological activity of morpholine derivatives, see: Lan et al. (2010); Raparti et al.(2009). For a related structure, see: Yang et al. (2011). For the definition of puckering parameters, see: Cremer & Pople (1975).graphic file with name e-67-o2500-scheme1.jpg

Experimental

Crystal data

  • C17H16I2N2O2

  • M r = 534.12

  • Monoclinic, Inline graphic

  • a = 26.4133 (16) Å

  • b = 7.6598 (4) Å

  • c = 18.0332 (11) Å

  • β = 91.417 (2)°

  • V = 3647.4 (4) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 3.46 mm−1

  • T = 295 K

  • 0.26 × 0.20 × 0.20 mm

Data collection

  • Bruker Kappa APEXII diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.467, T max = 0.545

  • 17839 measured reflections

  • 7647 independent reflections

  • 4855 reflections with I > 2σ(I)

  • R int = 0.023

Refinement

  • R[F 2 > 2σ(F 2)] = 0.056

  • wR(F 2) = 0.113

  • S = 1.16

  • 7647 reflections

  • 208 parameters

  • H-atom parameters constrained

  • Δρmax = 1.22 e Å−3

  • Δρmin = −1.72 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811034519/bt5621sup1.cif

e-67-o2500-sup1.cif (24KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034519/bt5621Isup2.hkl

e-67-o2500-Isup2.hkl (366.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811034519/bt5621Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2⋯N1 0.82 1.82 2.548 (5) 146
C6—H6⋯O1i 0.93 2.50 3.413 (5) 166

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors acknowledge the SAIF, IIT, Madras, for the data collection.

supplementary crystallographic information

Comment

Morpholine derivatives possess anticancer and antimicrobial (Lan et al., 2010; Raparti et al., 2009) activities. In the title compound, (I) (Fig. 1), The bond lengths C═N [1.282 (6)Å], C—I [C1—I1 = 2.092 (4) and C5—I2 = 2.097 (4) Å] are comparable with the literature values and the bond lengths of the morpholine ring are agree well with a reported related structure (Yang et al., 2011).

The mean planes of two benzene rings (C8–C13) and (C1–C6) are oriented at an angle of 2.57 (15)°. The morpholine ring adopts a chair conformation [Puckering parameters are Q = 0.544 (6)Å, θ = 170.8 (5)° and φ = 180 (4)° (Cremer & Pople, 1975) for the ring (O1/C15/C14/N2/C17/C16)].

The molecular structure is stabilized by O—H···N hydrogen bonding and the crystal packing exhibit weak intermolecular C—H···O (Fig. 2 and Table 1) and π–π [Cg2···Cg3(-x, -y, -z) distance of 3.663 (3)Å; Cg2···Cg3(-x, 1 - y, -z) distance of 4.074 (3)Å] interactions.

Experimental

An ethanolic solution (20 ml) of 4-(4-aminophenyl)morpholine (10 mmol) was magnetically stirred in a round bottom flask followed by drop wise addition of ethanolic solution of 3,5-diiodosalicylaldehyde (10 mmol). The reaction mixture was then refluxed for 3 h and upon cooling to 273 K, a red crystalline solid precipitates from the mixture. The solid which is separated out was filtered washed with ice cold ethanol and dried in vaccuo over anhydrous CaCl2. Single crystals suitable for the X-ray diffraction were obtained by slow evaporation of a solution of the title compound in methanol at room temperature. m.p. 443 K.

Refinement

All H atoms were positioned geometrically with C—H = 0.93–0.97 Å and O—H = 0.82 Å and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(O) and 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with atom labels and 30% probability displacement ellipsoids for non-H atoms.

Fig. 2.

Fig. 2.

The packing of the title compound, viewed down the c axis. Intermolecular hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted.

Crystal data

C17H16I2N2O2 F(000) = 2032
Mr = 534.12 Dx = 1.945 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 6743 reflections
a = 26.4133 (16) Å θ = 2.7–35.4°
b = 7.6598 (4) Å µ = 3.46 mm1
c = 18.0332 (11) Å T = 295 K
β = 91.417 (2)° Block, colourless
V = 3647.4 (4) Å3 0.26 × 0.20 × 0.20 mm
Z = 8

Data collection

Bruker Kappa APEXII diffractometer 7647 independent reflections
Radiation source: fine-focus sealed tube 4855 reflections with I > 2σ(I)
graphite Rint = 0.023
ω and φ scans θmax = 35.9°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −42→42
Tmin = 0.467, Tmax = 0.545 k = −5→12
17839 measured reflections l = −29→27

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113 H-atom parameters constrained
S = 1.16 w = 1/[σ2(Fo2) + (0.0134P)2 + 27.6528P] where P = (Fo2 + 2Fc2)/3
7647 reflections (Δ/σ)max < 0.001
208 parameters Δρmax = 1.22 e Å3
0 restraints Δρmin = −1.72 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
I1 0.198728 (14) −0.04313 (7) 0.01153 (2) 0.06368 (14)
I2 0.097444 (12) −0.01689 (5) 0.305807 (16) 0.04538 (10)
O1 −0.25208 (14) 0.6183 (6) −0.2595 (3) 0.0645 (11)
O2 0.09297 (14) 0.1239 (6) −0.03377 (17) 0.0567 (10)
H2 0.0683 0.1836 −0.0453 0.085*
N1 0.00453 (14) 0.2516 (5) −0.0214 (2) 0.0399 (9)
N2 −0.16015 (14) 0.5632 (5) −0.1763 (2) 0.0425 (9)
C1 0.13595 (16) 0.0208 (6) 0.0746 (2) 0.0369 (9)
C2 0.09350 (17) 0.0948 (6) 0.0387 (2) 0.0373 (9)
C3 0.05152 (15) 0.1370 (6) 0.0821 (2) 0.0335 (9)
C4 0.05340 (16) 0.1049 (6) 0.1581 (2) 0.0361 (9)
H4 0.0257 0.1332 0.1867 0.043*
C5 0.09549 (15) 0.0320 (6) 0.1913 (2) 0.0329 (9)
C6 0.13743 (15) −0.0108 (6) 0.1495 (2) 0.0337 (9)
H6 0.1660 −0.0601 0.1721 0.040*
C7 0.00713 (17) 0.2167 (6) 0.0481 (3) 0.0395 (10)
H7 −0.0203 0.2434 0.0775 0.047*
C8 −0.03754 (17) 0.3331 (6) −0.0573 (3) 0.0396 (10)
C9 −0.03566 (18) 0.3557 (7) −0.1329 (3) 0.0450 (11)
H9 −0.0070 0.3202 −0.1577 0.054*
C10 −0.07575 (19) 0.4305 (7) −0.1727 (3) 0.0462 (11)
H10 −0.0735 0.4440 −0.2238 0.055*
C11 −0.11929 (17) 0.4858 (6) −0.1375 (3) 0.0402 (10)
C12 −0.12009 (19) 0.4645 (8) −0.0609 (3) 0.0505 (13)
H12 −0.1483 0.5023 −0.0355 0.061*
C13 −0.0805 (2) 0.3894 (8) −0.0215 (3) 0.0520 (13)
H13 −0.0825 0.3762 0.0296 0.062*
C14 −0.1627 (2) 0.5380 (8) −0.2559 (3) 0.0591 (15)
H14A −0.1692 0.4159 −0.2668 0.071*
H14B −0.1305 0.5691 −0.2768 0.071*
C15 −0.2046 (2) 0.6497 (9) −0.2912 (4) 0.0682 (18)
H15A −0.1959 0.7720 −0.2852 0.082*
H15B −0.2069 0.6250 −0.3440 0.082*
C16 −0.2480 (2) 0.6635 (9) −0.1835 (4) 0.0655 (17)
H16A −0.2807 0.6489 −0.1611 0.079*
H16B −0.2385 0.7855 −0.1791 0.079*
C17 −0.20944 (19) 0.5535 (8) −0.1423 (3) 0.0573 (15)
H17A −0.2064 0.5932 −0.0913 0.069*
H17B −0.2208 0.4331 −0.1419 0.069*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
I1 0.04506 (19) 0.1026 (4) 0.04403 (18) 0.0186 (2) 0.01452 (14) −0.0004 (2)
I2 0.04006 (15) 0.0669 (2) 0.02930 (13) 0.00174 (15) 0.00371 (10) 0.00684 (14)
O1 0.0412 (19) 0.067 (3) 0.084 (3) −0.0058 (19) −0.0255 (19) 0.011 (2)
O2 0.059 (2) 0.086 (3) 0.0255 (15) 0.027 (2) 0.0000 (14) −0.0027 (17)
N1 0.0382 (19) 0.044 (2) 0.0372 (19) 0.0059 (17) −0.0102 (16) −0.0042 (17)
N2 0.0365 (19) 0.037 (2) 0.053 (2) −0.0016 (16) −0.0128 (17) 0.0076 (18)
C1 0.0314 (19) 0.050 (3) 0.0293 (18) 0.0038 (19) 0.0014 (15) −0.0053 (19)
C2 0.039 (2) 0.045 (3) 0.0277 (19) 0.000 (2) −0.0013 (16) −0.0041 (18)
C3 0.0301 (19) 0.038 (2) 0.0325 (19) 0.0010 (17) −0.0032 (16) −0.0035 (17)
C4 0.0287 (19) 0.044 (3) 0.035 (2) 0.0003 (18) 0.0036 (16) 0.0006 (19)
C5 0.0327 (19) 0.041 (2) 0.0249 (16) −0.0051 (18) 0.0025 (14) 0.0026 (17)
C6 0.0268 (17) 0.043 (2) 0.0316 (18) 0.0002 (17) −0.0023 (14) 0.0017 (18)
C7 0.031 (2) 0.043 (3) 0.044 (2) 0.0021 (19) −0.0029 (18) −0.004 (2)
C8 0.035 (2) 0.039 (2) 0.044 (2) 0.0025 (19) −0.0085 (18) −0.001 (2)
C9 0.039 (2) 0.051 (3) 0.046 (3) 0.008 (2) −0.004 (2) −0.002 (2)
C10 0.044 (3) 0.052 (3) 0.042 (2) 0.007 (2) −0.008 (2) 0.000 (2)
C11 0.034 (2) 0.034 (2) 0.052 (3) −0.0049 (18) −0.0112 (19) 0.004 (2)
C12 0.037 (2) 0.062 (3) 0.052 (3) 0.010 (2) −0.002 (2) 0.004 (3)
C13 0.046 (3) 0.069 (4) 0.042 (3) 0.010 (3) −0.002 (2) 0.006 (3)
C14 0.049 (3) 0.067 (4) 0.060 (3) 0.000 (3) −0.016 (3) 0.014 (3)
C15 0.056 (3) 0.075 (4) 0.072 (4) 0.003 (3) −0.024 (3) 0.019 (3)
C16 0.039 (3) 0.071 (4) 0.085 (5) 0.005 (3) −0.017 (3) 0.012 (4)
C17 0.037 (2) 0.062 (4) 0.073 (4) 0.003 (2) −0.010 (2) 0.011 (3)

Geometric parameters (Å, °)

I1—C1 2.092 (4) C8—C9 1.376 (7)
I2—C5 2.097 (4) C8—C13 1.387 (7)
O1—C15 1.412 (7) C9—C10 1.389 (6)
O1—C16 1.415 (8) C9—H9 0.9300
O2—C2 1.325 (5) C10—C11 1.393 (7)
O2—H2 0.8200 C10—H10 0.9300
N1—C7 1.282 (6) C11—C12 1.392 (7)
N1—C8 1.417 (6) C12—C13 1.376 (7)
N2—C11 1.403 (6) C12—H12 0.9300
N2—C14 1.447 (7) C13—H13 0.9300
N2—C17 1.455 (7) C14—C15 1.525 (7)
C1—C6 1.372 (6) C14—H14A 0.9700
C1—C2 1.401 (6) C14—H14B 0.9700
C2—C3 1.411 (6) C15—H15A 0.9700
C3—C4 1.393 (6) C15—H15B 0.9700
C3—C7 1.445 (6) C16—C17 1.504 (7)
C4—C5 1.369 (6) C16—H16A 0.9700
C4—H4 0.9300 C16—H16B 0.9700
C5—C6 1.394 (6) C17—H17A 0.9700
C6—H6 0.9300 C17—H17B 0.9700
C7—H7 0.9300
C15—O1—C16 107.7 (4) C11—C10—H10 119.4
C2—O2—H2 109.5 C12—C11—C10 116.7 (4)
C7—N1—C8 124.1 (4) C12—C11—N2 120.9 (5)
C11—N2—C14 117.0 (4) C10—C11—N2 122.3 (5)
C11—N2—C17 117.0 (4) C13—C12—C11 122.1 (5)
C14—N2—C17 113.0 (4) C13—C12—H12 118.9
C6—C1—C2 122.0 (4) C11—C12—H12 118.9
C6—C1—I1 119.4 (3) C12—C13—C8 120.7 (5)
C2—C1—I1 118.6 (3) C12—C13—H13 119.7
O2—C2—C1 120.9 (4) C8—C13—H13 119.7
O2—C2—C3 121.3 (4) N2—C14—C15 110.8 (5)
C1—C2—C3 117.8 (4) N2—C14—H14A 109.5
C4—C3—C2 119.8 (4) C15—C14—H14A 109.5
C4—C3—C7 120.1 (4) N2—C14—H14B 109.5
C2—C3—C7 120.2 (4) C15—C14—H14B 109.5
C5—C4—C3 120.8 (4) H14A—C14—H14B 108.1
C5—C4—H4 119.6 O1—C15—C14 112.2 (5)
C3—C4—H4 119.6 O1—C15—H15A 109.2
C4—C5—C6 120.5 (4) C14—C15—H15A 109.2
C4—C5—I2 120.2 (3) O1—C15—H15B 109.2
C6—C5—I2 119.3 (3) C14—C15—H15B 109.2
C1—C6—C5 119.2 (4) H15A—C15—H15B 107.9
C1—C6—H6 120.4 O1—C16—C17 112.1 (5)
C5—C6—H6 120.4 O1—C16—H16A 109.2
N1—C7—C3 121.7 (4) C17—C16—H16A 109.2
N1—C7—H7 119.1 O1—C16—H16B 109.2
C3—C7—H7 119.1 C17—C16—H16B 109.2
C9—C8—C13 118.1 (4) H16A—C16—H16B 107.9
C9—C8—N1 117.4 (4) N2—C17—C16 111.4 (5)
C13—C8—N1 124.4 (4) N2—C17—H17A 109.3
C8—C9—C10 121.3 (5) C16—C17—H17A 109.3
C8—C9—H9 119.4 N2—C17—H17B 109.3
C10—C9—H9 119.4 C16—C17—H17B 109.3
C9—C10—C11 121.1 (5) H17A—C17—H17B 108.0
C9—C10—H10 119.4
C6—C1—C2—O2 −179.9 (5) N1—C8—C9—C10 178.4 (5)
I1—C1—C2—O2 0.0 (7) C8—C9—C10—C11 0.1 (8)
C6—C1—C2—C3 0.1 (7) C9—C10—C11—C12 0.9 (8)
I1—C1—C2—C3 180.0 (3) C9—C10—C11—N2 179.4 (5)
O2—C2—C3—C4 −179.9 (5) C14—N2—C11—C12 −163.6 (5)
C1—C2—C3—C4 0.1 (7) C17—N2—C11—C12 −24.8 (7)
O2—C2—C3—C7 −1.2 (7) C14—N2—C11—C10 17.9 (7)
C1—C2—C3—C7 178.8 (4) C17—N2—C11—C10 156.7 (5)
C2—C3—C4—C5 −0.2 (7) C10—C11—C12—C13 −1.3 (8)
C7—C3—C4—C5 −178.9 (4) N2—C11—C12—C13 −179.9 (5)
C3—C4—C5—C6 0.2 (7) C11—C12—C13—C8 0.7 (9)
C3—C4—C5—I2 −179.6 (3) C9—C8—C13—C12 0.4 (8)
C2—C1—C6—C5 −0.1 (7) N1—C8—C13—C12 −178.8 (5)
I1—C1—C6—C5 180.0 (3) C11—N2—C14—C15 −172.1 (5)
C4—C5—C6—C1 −0.1 (7) C17—N2—C14—C15 47.5 (6)
I2—C5—C6—C1 179.8 (3) C16—O1—C15—C14 61.6 (7)
C8—N1—C7—C3 −178.5 (4) N2—C14—C15—O1 −55.3 (7)
C4—C3—C7—N1 178.5 (5) C15—O1—C16—C17 −61.9 (6)
C2—C3—C7—N1 −0.2 (7) C11—N2—C17—C16 171.5 (5)
C7—N1—C8—C9 −177.4 (5) C14—N2—C17—C16 −48.1 (7)
C7—N1—C8—C13 1.7 (8) O1—C16—C17—N2 55.7 (7)
C13—C8—C9—C10 −0.8 (8)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O2—H2···N1 0.82 1.82 2.548 (5) 146
C6—H6···O1i 0.93 2.50 3.413 (5) 166

Symmetry codes: (i) x+1/2, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5621).

References

  1. Bruker (2004). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
  3. Lan, P., Chen, W. N., Xiao, G. K., Sun, P. H. & Chen, W. M. (2010). Bioorg. Med. Chem. Lett. 20, 6764–6772. [DOI] [PubMed]
  4. Raparti, V., Chitre, T., Bothara, K., Kumar, V., Dangre, S., Khachane, C., Gore, S. & Deshmane, B. (2009). Eur. J. Med. Chem. 44, 3954–3960. [DOI] [PubMed]
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  8. Yang, L.-L., Zheng, R.-L., Li, G.-B., Sun, Q.-Z. & Xie, Y.-M. (2011). Acta Cryst. E67, o754. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811034519/bt5621sup1.cif

e-67-o2500-sup1.cif (24KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034519/bt5621Isup2.hkl

e-67-o2500-Isup2.hkl (366.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811034519/bt5621Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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