Abstract
In the title compound, C17H16I2N2O2, the two aromatic rings are almost coplanar [dihedral angle 2.57 (15)°]. The morpholine ring adopts a chair conformation. The molecular structure is stabilized by an O—H⋯N hydrogen bond and the crystal packing exhibits weak intermolecular C—H⋯O and π–π [centroid-to-centroid distances 3.663 (3)-4.073 (3) Å] interactions.
Related literature
For the biological activity of morpholine derivatives, see: Lan et al. (2010 ▶); Raparti et al.(2009 ▶). For a related structure, see: Yang et al. (2011 ▶). For the definition of puckering parameters, see: Cremer & Pople (1975 ▶).
Experimental
Crystal data
C17H16I2N2O2
M r = 534.12
Monoclinic,
a = 26.4133 (16) Å
b = 7.6598 (4) Å
c = 18.0332 (11) Å
β = 91.417 (2)°
V = 3647.4 (4) Å3
Z = 8
Mo Kα radiation
μ = 3.46 mm−1
T = 295 K
0.26 × 0.20 × 0.20 mm
Data collection
Bruker Kappa APEXII diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.467, T max = 0.545
17839 measured reflections
7647 independent reflections
4855 reflections with I > 2σ(I)
R int = 0.023
Refinement
R[F 2 > 2σ(F 2)] = 0.056
wR(F 2) = 0.113
S = 1.16
7647 reflections
208 parameters
H-atom parameters constrained
Δρmax = 1.22 e Å−3
Δρmin = −1.72 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811034519/bt5621sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034519/bt5621Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811034519/bt5621Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O2—H2⋯N1 | 0.82 | 1.82 | 2.548 (5) | 146 |
| C6—H6⋯O1i | 0.93 | 2.50 | 3.413 (5) | 166 |
Symmetry code: (i)
.
Acknowledgments
The authors acknowledge the SAIF, IIT, Madras, for the data collection.
supplementary crystallographic information
Comment
Morpholine derivatives possess anticancer and antimicrobial (Lan et al., 2010; Raparti et al., 2009) activities. In the title compound, (I) (Fig. 1), The bond lengths C═N [1.282 (6)Å], C—I [C1—I1 = 2.092 (4) and C5—I2 = 2.097 (4) Å] are comparable with the literature values and the bond lengths of the morpholine ring are agree well with a reported related structure (Yang et al., 2011).
The mean planes of two benzene rings (C8–C13) and (C1–C6) are oriented at an angle of 2.57 (15)°. The morpholine ring adopts a chair conformation [Puckering parameters are Q = 0.544 (6)Å, θ = 170.8 (5)° and φ = 180 (4)° (Cremer & Pople, 1975) for the ring (O1/C15/C14/N2/C17/C16)].
The molecular structure is stabilized by O—H···N hydrogen bonding and the crystal packing exhibit weak intermolecular C—H···O (Fig. 2 and Table 1) and π–π [Cg2···Cg3(-x, -y, -z) distance of 3.663 (3)Å; Cg2···Cg3(-x, 1 - y, -z) distance of 4.074 (3)Å] interactions.
Experimental
An ethanolic solution (20 ml) of 4-(4-aminophenyl)morpholine (10 mmol) was magnetically stirred in a round bottom flask followed by drop wise addition of ethanolic solution of 3,5-diiodosalicylaldehyde (10 mmol). The reaction mixture was then refluxed for 3 h and upon cooling to 273 K, a red crystalline solid precipitates from the mixture. The solid which is separated out was filtered washed with ice cold ethanol and dried in vaccuo over anhydrous CaCl2. Single crystals suitable for the X-ray diffraction were obtained by slow evaporation of a solution of the title compound in methanol at room temperature. m.p. 443 K.
Refinement
All H atoms were positioned geometrically with C—H = 0.93–0.97 Å and O—H = 0.82 Å and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(O) and 1.2Ueq(C).
Figures
Fig. 1.
The molecular structure of the title compound, with atom labels and 30% probability displacement ellipsoids for non-H atoms.
Fig. 2.
The packing of the title compound, viewed down the c axis. Intermolecular hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted.
Crystal data
| C17H16I2N2O2 | F(000) = 2032 |
| Mr = 534.12 | Dx = 1.945 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 6743 reflections |
| a = 26.4133 (16) Å | θ = 2.7–35.4° |
| b = 7.6598 (4) Å | µ = 3.46 mm−1 |
| c = 18.0332 (11) Å | T = 295 K |
| β = 91.417 (2)° | Block, colourless |
| V = 3647.4 (4) Å3 | 0.26 × 0.20 × 0.20 mm |
| Z = 8 |
Data collection
| Bruker Kappa APEXII diffractometer | 7647 independent reflections |
| Radiation source: fine-focus sealed tube | 4855 reflections with I > 2σ(I) |
| graphite | Rint = 0.023 |
| ω and φ scans | θmax = 35.9°, θmin = 2.3° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −42→42 |
| Tmin = 0.467, Tmax = 0.545 | k = −5→12 |
| 17839 measured reflections | l = −29→27 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.113 | H-atom parameters constrained |
| S = 1.16 | w = 1/[σ2(Fo2) + (0.0134P)2 + 27.6528P] where P = (Fo2 + 2Fc2)/3 |
| 7647 reflections | (Δ/σ)max < 0.001 |
| 208 parameters | Δρmax = 1.22 e Å−3 |
| 0 restraints | Δρmin = −1.72 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| I1 | 0.198728 (14) | −0.04313 (7) | 0.01153 (2) | 0.06368 (14) | |
| I2 | 0.097444 (12) | −0.01689 (5) | 0.305807 (16) | 0.04538 (10) | |
| O1 | −0.25208 (14) | 0.6183 (6) | −0.2595 (3) | 0.0645 (11) | |
| O2 | 0.09297 (14) | 0.1239 (6) | −0.03377 (17) | 0.0567 (10) | |
| H2 | 0.0683 | 0.1836 | −0.0453 | 0.085* | |
| N1 | 0.00453 (14) | 0.2516 (5) | −0.0214 (2) | 0.0399 (9) | |
| N2 | −0.16015 (14) | 0.5632 (5) | −0.1763 (2) | 0.0425 (9) | |
| C1 | 0.13595 (16) | 0.0208 (6) | 0.0746 (2) | 0.0369 (9) | |
| C2 | 0.09350 (17) | 0.0948 (6) | 0.0387 (2) | 0.0373 (9) | |
| C3 | 0.05152 (15) | 0.1370 (6) | 0.0821 (2) | 0.0335 (9) | |
| C4 | 0.05340 (16) | 0.1049 (6) | 0.1581 (2) | 0.0361 (9) | |
| H4 | 0.0257 | 0.1332 | 0.1867 | 0.043* | |
| C5 | 0.09549 (15) | 0.0320 (6) | 0.1913 (2) | 0.0329 (9) | |
| C6 | 0.13743 (15) | −0.0108 (6) | 0.1495 (2) | 0.0337 (9) | |
| H6 | 0.1660 | −0.0601 | 0.1721 | 0.040* | |
| C7 | 0.00713 (17) | 0.2167 (6) | 0.0481 (3) | 0.0395 (10) | |
| H7 | −0.0203 | 0.2434 | 0.0775 | 0.047* | |
| C8 | −0.03754 (17) | 0.3331 (6) | −0.0573 (3) | 0.0396 (10) | |
| C9 | −0.03566 (18) | 0.3557 (7) | −0.1329 (3) | 0.0450 (11) | |
| H9 | −0.0070 | 0.3202 | −0.1577 | 0.054* | |
| C10 | −0.07575 (19) | 0.4305 (7) | −0.1727 (3) | 0.0462 (11) | |
| H10 | −0.0735 | 0.4440 | −0.2238 | 0.055* | |
| C11 | −0.11929 (17) | 0.4858 (6) | −0.1375 (3) | 0.0402 (10) | |
| C12 | −0.12009 (19) | 0.4645 (8) | −0.0609 (3) | 0.0505 (13) | |
| H12 | −0.1483 | 0.5023 | −0.0355 | 0.061* | |
| C13 | −0.0805 (2) | 0.3894 (8) | −0.0215 (3) | 0.0520 (13) | |
| H13 | −0.0825 | 0.3762 | 0.0296 | 0.062* | |
| C14 | −0.1627 (2) | 0.5380 (8) | −0.2559 (3) | 0.0591 (15) | |
| H14A | −0.1692 | 0.4159 | −0.2668 | 0.071* | |
| H14B | −0.1305 | 0.5691 | −0.2768 | 0.071* | |
| C15 | −0.2046 (2) | 0.6497 (9) | −0.2912 (4) | 0.0682 (18) | |
| H15A | −0.1959 | 0.7720 | −0.2852 | 0.082* | |
| H15B | −0.2069 | 0.6250 | −0.3440 | 0.082* | |
| C16 | −0.2480 (2) | 0.6635 (9) | −0.1835 (4) | 0.0655 (17) | |
| H16A | −0.2807 | 0.6489 | −0.1611 | 0.079* | |
| H16B | −0.2385 | 0.7855 | −0.1791 | 0.079* | |
| C17 | −0.20944 (19) | 0.5535 (8) | −0.1423 (3) | 0.0573 (15) | |
| H17A | −0.2064 | 0.5932 | −0.0913 | 0.069* | |
| H17B | −0.2208 | 0.4331 | −0.1419 | 0.069* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| I1 | 0.04506 (19) | 0.1026 (4) | 0.04403 (18) | 0.0186 (2) | 0.01452 (14) | −0.0004 (2) |
| I2 | 0.04006 (15) | 0.0669 (2) | 0.02930 (13) | 0.00174 (15) | 0.00371 (10) | 0.00684 (14) |
| O1 | 0.0412 (19) | 0.067 (3) | 0.084 (3) | −0.0058 (19) | −0.0255 (19) | 0.011 (2) |
| O2 | 0.059 (2) | 0.086 (3) | 0.0255 (15) | 0.027 (2) | 0.0000 (14) | −0.0027 (17) |
| N1 | 0.0382 (19) | 0.044 (2) | 0.0372 (19) | 0.0059 (17) | −0.0102 (16) | −0.0042 (17) |
| N2 | 0.0365 (19) | 0.037 (2) | 0.053 (2) | −0.0016 (16) | −0.0128 (17) | 0.0076 (18) |
| C1 | 0.0314 (19) | 0.050 (3) | 0.0293 (18) | 0.0038 (19) | 0.0014 (15) | −0.0053 (19) |
| C2 | 0.039 (2) | 0.045 (3) | 0.0277 (19) | 0.000 (2) | −0.0013 (16) | −0.0041 (18) |
| C3 | 0.0301 (19) | 0.038 (2) | 0.0325 (19) | 0.0010 (17) | −0.0032 (16) | −0.0035 (17) |
| C4 | 0.0287 (19) | 0.044 (3) | 0.035 (2) | 0.0003 (18) | 0.0036 (16) | 0.0006 (19) |
| C5 | 0.0327 (19) | 0.041 (2) | 0.0249 (16) | −0.0051 (18) | 0.0025 (14) | 0.0026 (17) |
| C6 | 0.0268 (17) | 0.043 (2) | 0.0316 (18) | 0.0002 (17) | −0.0023 (14) | 0.0017 (18) |
| C7 | 0.031 (2) | 0.043 (3) | 0.044 (2) | 0.0021 (19) | −0.0029 (18) | −0.004 (2) |
| C8 | 0.035 (2) | 0.039 (2) | 0.044 (2) | 0.0025 (19) | −0.0085 (18) | −0.001 (2) |
| C9 | 0.039 (2) | 0.051 (3) | 0.046 (3) | 0.008 (2) | −0.004 (2) | −0.002 (2) |
| C10 | 0.044 (3) | 0.052 (3) | 0.042 (2) | 0.007 (2) | −0.008 (2) | 0.000 (2) |
| C11 | 0.034 (2) | 0.034 (2) | 0.052 (3) | −0.0049 (18) | −0.0112 (19) | 0.004 (2) |
| C12 | 0.037 (2) | 0.062 (3) | 0.052 (3) | 0.010 (2) | −0.002 (2) | 0.004 (3) |
| C13 | 0.046 (3) | 0.069 (4) | 0.042 (3) | 0.010 (3) | −0.002 (2) | 0.006 (3) |
| C14 | 0.049 (3) | 0.067 (4) | 0.060 (3) | 0.000 (3) | −0.016 (3) | 0.014 (3) |
| C15 | 0.056 (3) | 0.075 (4) | 0.072 (4) | 0.003 (3) | −0.024 (3) | 0.019 (3) |
| C16 | 0.039 (3) | 0.071 (4) | 0.085 (5) | 0.005 (3) | −0.017 (3) | 0.012 (4) |
| C17 | 0.037 (2) | 0.062 (4) | 0.073 (4) | 0.003 (2) | −0.010 (2) | 0.011 (3) |
Geometric parameters (Å, °)
| I1—C1 | 2.092 (4) | C8—C9 | 1.376 (7) |
| I2—C5 | 2.097 (4) | C8—C13 | 1.387 (7) |
| O1—C15 | 1.412 (7) | C9—C10 | 1.389 (6) |
| O1—C16 | 1.415 (8) | C9—H9 | 0.9300 |
| O2—C2 | 1.325 (5) | C10—C11 | 1.393 (7) |
| O2—H2 | 0.8200 | C10—H10 | 0.9300 |
| N1—C7 | 1.282 (6) | C11—C12 | 1.392 (7) |
| N1—C8 | 1.417 (6) | C12—C13 | 1.376 (7) |
| N2—C11 | 1.403 (6) | C12—H12 | 0.9300 |
| N2—C14 | 1.447 (7) | C13—H13 | 0.9300 |
| N2—C17 | 1.455 (7) | C14—C15 | 1.525 (7) |
| C1—C6 | 1.372 (6) | C14—H14A | 0.9700 |
| C1—C2 | 1.401 (6) | C14—H14B | 0.9700 |
| C2—C3 | 1.411 (6) | C15—H15A | 0.9700 |
| C3—C4 | 1.393 (6) | C15—H15B | 0.9700 |
| C3—C7 | 1.445 (6) | C16—C17 | 1.504 (7) |
| C4—C5 | 1.369 (6) | C16—H16A | 0.9700 |
| C4—H4 | 0.9300 | C16—H16B | 0.9700 |
| C5—C6 | 1.394 (6) | C17—H17A | 0.9700 |
| C6—H6 | 0.9300 | C17—H17B | 0.9700 |
| C7—H7 | 0.9300 | ||
| C15—O1—C16 | 107.7 (4) | C11—C10—H10 | 119.4 |
| C2—O2—H2 | 109.5 | C12—C11—C10 | 116.7 (4) |
| C7—N1—C8 | 124.1 (4) | C12—C11—N2 | 120.9 (5) |
| C11—N2—C14 | 117.0 (4) | C10—C11—N2 | 122.3 (5) |
| C11—N2—C17 | 117.0 (4) | C13—C12—C11 | 122.1 (5) |
| C14—N2—C17 | 113.0 (4) | C13—C12—H12 | 118.9 |
| C6—C1—C2 | 122.0 (4) | C11—C12—H12 | 118.9 |
| C6—C1—I1 | 119.4 (3) | C12—C13—C8 | 120.7 (5) |
| C2—C1—I1 | 118.6 (3) | C12—C13—H13 | 119.7 |
| O2—C2—C1 | 120.9 (4) | C8—C13—H13 | 119.7 |
| O2—C2—C3 | 121.3 (4) | N2—C14—C15 | 110.8 (5) |
| C1—C2—C3 | 117.8 (4) | N2—C14—H14A | 109.5 |
| C4—C3—C2 | 119.8 (4) | C15—C14—H14A | 109.5 |
| C4—C3—C7 | 120.1 (4) | N2—C14—H14B | 109.5 |
| C2—C3—C7 | 120.2 (4) | C15—C14—H14B | 109.5 |
| C5—C4—C3 | 120.8 (4) | H14A—C14—H14B | 108.1 |
| C5—C4—H4 | 119.6 | O1—C15—C14 | 112.2 (5) |
| C3—C4—H4 | 119.6 | O1—C15—H15A | 109.2 |
| C4—C5—C6 | 120.5 (4) | C14—C15—H15A | 109.2 |
| C4—C5—I2 | 120.2 (3) | O1—C15—H15B | 109.2 |
| C6—C5—I2 | 119.3 (3) | C14—C15—H15B | 109.2 |
| C1—C6—C5 | 119.2 (4) | H15A—C15—H15B | 107.9 |
| C1—C6—H6 | 120.4 | O1—C16—C17 | 112.1 (5) |
| C5—C6—H6 | 120.4 | O1—C16—H16A | 109.2 |
| N1—C7—C3 | 121.7 (4) | C17—C16—H16A | 109.2 |
| N1—C7—H7 | 119.1 | O1—C16—H16B | 109.2 |
| C3—C7—H7 | 119.1 | C17—C16—H16B | 109.2 |
| C9—C8—C13 | 118.1 (4) | H16A—C16—H16B | 107.9 |
| C9—C8—N1 | 117.4 (4) | N2—C17—C16 | 111.4 (5) |
| C13—C8—N1 | 124.4 (4) | N2—C17—H17A | 109.3 |
| C8—C9—C10 | 121.3 (5) | C16—C17—H17A | 109.3 |
| C8—C9—H9 | 119.4 | N2—C17—H17B | 109.3 |
| C10—C9—H9 | 119.4 | C16—C17—H17B | 109.3 |
| C9—C10—C11 | 121.1 (5) | H17A—C17—H17B | 108.0 |
| C9—C10—H10 | 119.4 | ||
| C6—C1—C2—O2 | −179.9 (5) | N1—C8—C9—C10 | 178.4 (5) |
| I1—C1—C2—O2 | 0.0 (7) | C8—C9—C10—C11 | 0.1 (8) |
| C6—C1—C2—C3 | 0.1 (7) | C9—C10—C11—C12 | 0.9 (8) |
| I1—C1—C2—C3 | 180.0 (3) | C9—C10—C11—N2 | 179.4 (5) |
| O2—C2—C3—C4 | −179.9 (5) | C14—N2—C11—C12 | −163.6 (5) |
| C1—C2—C3—C4 | 0.1 (7) | C17—N2—C11—C12 | −24.8 (7) |
| O2—C2—C3—C7 | −1.2 (7) | C14—N2—C11—C10 | 17.9 (7) |
| C1—C2—C3—C7 | 178.8 (4) | C17—N2—C11—C10 | 156.7 (5) |
| C2—C3—C4—C5 | −0.2 (7) | C10—C11—C12—C13 | −1.3 (8) |
| C7—C3—C4—C5 | −178.9 (4) | N2—C11—C12—C13 | −179.9 (5) |
| C3—C4—C5—C6 | 0.2 (7) | C11—C12—C13—C8 | 0.7 (9) |
| C3—C4—C5—I2 | −179.6 (3) | C9—C8—C13—C12 | 0.4 (8) |
| C2—C1—C6—C5 | −0.1 (7) | N1—C8—C13—C12 | −178.8 (5) |
| I1—C1—C6—C5 | 180.0 (3) | C11—N2—C14—C15 | −172.1 (5) |
| C4—C5—C6—C1 | −0.1 (7) | C17—N2—C14—C15 | 47.5 (6) |
| I2—C5—C6—C1 | 179.8 (3) | C16—O1—C15—C14 | 61.6 (7) |
| C8—N1—C7—C3 | −178.5 (4) | N2—C14—C15—O1 | −55.3 (7) |
| C4—C3—C7—N1 | 178.5 (5) | C15—O1—C16—C17 | −61.9 (6) |
| C2—C3—C7—N1 | −0.2 (7) | C11—N2—C17—C16 | 171.5 (5) |
| C7—N1—C8—C9 | −177.4 (5) | C14—N2—C17—C16 | −48.1 (7) |
| C7—N1—C8—C13 | 1.7 (8) | O1—C16—C17—N2 | 55.7 (7) |
| C13—C8—C9—C10 | −0.8 (8) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O2—H2···N1 | 0.82 | 1.82 | 2.548 (5) | 146 |
| C6—H6···O1i | 0.93 | 2.50 | 3.413 (5) | 166 |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5621).
References
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- Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
- Lan, P., Chen, W. N., Xiao, G. K., Sun, P. H. & Chen, W. M. (2010). Bioorg. Med. Chem. Lett. 20, 6764–6772. [DOI] [PubMed]
- Raparti, V., Chitre, T., Bothara, K., Kumar, V., Dangre, S., Khachane, C., Gore, S. & Deshmane, B. (2009). Eur. J. Med. Chem. 44, 3954–3960. [DOI] [PubMed]
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811034519/bt5621sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034519/bt5621Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811034519/bt5621Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


