Abstract
In the title molecule, C11H13ClN2O2, the morpholine ring has a chair conformation. In the crystal, molecules are linked into chains along [100] by N—H⋯O hydrogen bonds.
Related literature
For the applications of morpholine compounds, see: Arrieta et al. (2007 ▶). For related structures, see: Li (2011a
▶,b
▶).
Experimental
Crystal data
C11H13ClN2O2
M r = 240.68
Orthorhombic,
a = 9.3359 (19) Å
b = 11.105 (2) Å
c = 22.426 (5) Å
V = 2325.0 (8) Å3
Z = 8
Mo Kα radiation
μ = 0.32 mm−1
T = 293 K
0.26 × 0.19 × 0.18 mm
Data collection
Bruker SMART CCD diffractometer
20865 measured reflections
2660 independent reflections
2081 reflections with I > 2σ(I)
R int = 0.059
Refinement
R[F 2 > 2σ(F 2)] = 0.044
wR(F 2) = 0.124
S = 1.07
2660 reflections
149 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.40 e Å−3
Δρmin = −0.29 e Å−3
Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811034611/lh5309sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034611/lh5309Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811034611/lh5309Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H1N⋯O2i | 0.838 (19) | 2.114 (19) | 2.9226 (19) | 162.2 (19) |
Symmetry code: (i)
.
supplementary crystallographic information
Comment
Morpholine compounds are an important intermediate reagent in organic synthesis (Arrieta et al., 2007). As part of our search for new carboxamide compounds (Li, 2011a,b) we have determined the crystal structure of the title compound containing a morpholine ring. The molecular structure of the title compound is shown in Fig. 1. The morpholine ring (N1/C1/C2/C3/C4/O1) is in a chair conformation. In the crystal, molecules are linked into chains along [100] by N—H···O hydrogen bonds.
Experimental
A mixture of morpholine (0.1 mol), and (4-chlorophenyl)carbamic chloride (0.1 mol) was stirred in refluxing ethanol (20 ml) for 4 h to afford the title compound (0.065 mol, yield 65%). Colourless blocks of the title compound were obtained by recrystallization from ethanol at room temperature.
Refinement
H atoms were fixed geometrically and allowed to ride on their attached atoms, with C—H distances = 0.93–0.97 Å and with Uiso(H) = 1.2Ueq(C). The H atom bonded to N2 was refined independently with an isotropic displacement parameter.
Figures
Fig. 1.
The molecular structure of the title compound showing 30% probability displacement ellipsoids.
Crystal data
| C11H13ClN2O2 | F(000) = 1008 |
| Mr = 240.68 | Dx = 1.375 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 2081 reflections |
| a = 9.3359 (19) Å | θ = 2.6–27.4° |
| b = 11.105 (2) Å | µ = 0.32 mm−1 |
| c = 22.426 (5) Å | T = 293 K |
| V = 2325.0 (8) Å3 | Block, colorless |
| Z = 8 | 0.26 × 0.19 × 0.18 mm |
Data collection
| Bruker SMART CCD diffractometer | 2081 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.059 |
| graphite | θmax = 27.5°, θmin = 3.0° |
| φ and ω scans | h = −11→12 |
| 20865 measured reflections | k = −14→14 |
| 2660 independent reflections | l = −29→29 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.0583P)2 + 0.5192P] where P = (Fo2 + 2Fc2)/3 |
| 2660 reflections | (Δ/σ)max < 0.001 |
| 149 parameters | Δρmax = 0.40 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.12457 (6) | 0.60377 (5) | 0.44436 (2) | 0.0656 (2) | |
| O1 | 0.41840 (19) | 0.16232 (19) | 0.04233 (6) | 0.0854 (6) | |
| O2 | 0.14298 (12) | 0.24548 (12) | 0.21323 (5) | 0.0505 (3) | |
| N1 | 0.34301 (15) | 0.19345 (14) | 0.16222 (6) | 0.0473 (4) | |
| N2 | 0.35998 (15) | 0.31812 (13) | 0.24422 (6) | 0.0407 (3) | |
| C1 | 0.2740 (3) | 0.1513 (3) | 0.06064 (9) | 0.0782 (7) | |
| H1A | 0.2252 | 0.0940 | 0.0351 | 0.094* | |
| H1B | 0.2264 | 0.2285 | 0.0567 | 0.094* | |
| C2 | 0.2651 (2) | 0.1097 (2) | 0.12415 (8) | 0.0598 (5) | |
| H2B | 0.1657 | 0.1058 | 0.1365 | 0.072* | |
| H2C | 0.3061 | 0.0298 | 0.1277 | 0.072* | |
| C3 | 0.48960 (18) | 0.21365 (17) | 0.14282 (7) | 0.0477 (4) | |
| H3A | 0.5456 | 0.1411 | 0.1489 | 0.057* | |
| H3B | 0.5322 | 0.2777 | 0.1663 | 0.057* | |
| C4 | 0.4918 (2) | 0.2472 (2) | 0.07824 (9) | 0.0695 (6) | |
| H4A | 0.4477 | 0.3257 | 0.0733 | 0.083* | |
| H4B | 0.5903 | 0.2531 | 0.0649 | 0.083* | |
| C5 | 0.27454 (16) | 0.25192 (14) | 0.20668 (7) | 0.0377 (3) | |
| C6 | 0.30274 (16) | 0.38724 (13) | 0.29171 (7) | 0.0370 (3) | |
| C7 | 0.36139 (17) | 0.37550 (15) | 0.34817 (7) | 0.0416 (4) | |
| H7A | 0.4372 | 0.3226 | 0.3545 | 0.050* | |
| C8 | 0.30729 (19) | 0.44249 (15) | 0.39539 (7) | 0.0452 (4) | |
| H8A | 0.3465 | 0.4350 | 0.4333 | 0.054* | |
| C9 | 0.19474 (19) | 0.52025 (14) | 0.38526 (7) | 0.0450 (4) | |
| C10 | 0.13723 (18) | 0.53487 (15) | 0.32897 (8) | 0.0459 (4) | |
| H10A | 0.0626 | 0.5888 | 0.3226 | 0.055* | |
| C11 | 0.19215 (18) | 0.46827 (14) | 0.28228 (7) | 0.0426 (4) | |
| H11A | 0.1546 | 0.4779 | 0.2442 | 0.051* | |
| H1N | 0.445 (2) | 0.2955 (18) | 0.2483 (9) | 0.052 (5)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0811 (4) | 0.0609 (3) | 0.0549 (3) | 0.0125 (2) | 0.0184 (2) | −0.0133 (2) |
| O1 | 0.0807 (11) | 0.1309 (16) | 0.0446 (7) | −0.0306 (11) | 0.0110 (8) | −0.0221 (8) |
| O2 | 0.0341 (6) | 0.0664 (8) | 0.0511 (7) | −0.0016 (5) | 0.0026 (5) | −0.0106 (5) |
| N1 | 0.0405 (7) | 0.0582 (9) | 0.0432 (7) | −0.0077 (6) | 0.0057 (6) | −0.0150 (6) |
| N2 | 0.0347 (7) | 0.0469 (8) | 0.0404 (7) | 0.0043 (6) | 0.0000 (6) | −0.0087 (6) |
| C1 | 0.0687 (14) | 0.115 (2) | 0.0509 (12) | −0.0185 (14) | −0.0091 (11) | −0.0168 (12) |
| C2 | 0.0559 (11) | 0.0712 (13) | 0.0522 (10) | −0.0190 (9) | 0.0065 (9) | −0.0229 (9) |
| C3 | 0.0364 (8) | 0.0592 (10) | 0.0475 (9) | 0.0008 (7) | 0.0050 (7) | −0.0114 (8) |
| C4 | 0.0668 (13) | 0.0873 (16) | 0.0543 (11) | −0.0210 (12) | 0.0089 (11) | −0.0037 (10) |
| C5 | 0.0346 (8) | 0.0410 (8) | 0.0375 (8) | 0.0013 (6) | 0.0002 (6) | 0.0008 (6) |
| C6 | 0.0376 (8) | 0.0342 (8) | 0.0391 (8) | −0.0014 (6) | 0.0045 (6) | −0.0013 (6) |
| C7 | 0.0441 (9) | 0.0378 (8) | 0.0429 (9) | 0.0044 (6) | −0.0011 (7) | −0.0006 (6) |
| C8 | 0.0537 (10) | 0.0437 (9) | 0.0383 (8) | −0.0004 (7) | 0.0031 (7) | 0.0000 (7) |
| C9 | 0.0537 (9) | 0.0356 (8) | 0.0457 (9) | −0.0019 (7) | 0.0134 (8) | −0.0036 (6) |
| C10 | 0.0488 (9) | 0.0354 (8) | 0.0534 (10) | 0.0062 (7) | 0.0072 (8) | 0.0019 (7) |
| C11 | 0.0475 (9) | 0.0380 (8) | 0.0422 (8) | 0.0033 (7) | 0.0007 (7) | 0.0035 (6) |
Geometric parameters (Å, °)
| Cl1—C9 | 1.7452 (16) | C3—C4 | 1.496 (3) |
| O1—C1 | 1.415 (3) | C3—H3A | 0.9700 |
| O1—C4 | 1.417 (3) | C3—H3B | 0.9700 |
| O2—C5 | 1.2390 (19) | C4—H4A | 0.9700 |
| N1—C5 | 1.351 (2) | C4—H4B | 0.9700 |
| N1—C3 | 1.453 (2) | C6—C7 | 1.385 (2) |
| N1—C2 | 1.457 (2) | C6—C11 | 1.386 (2) |
| N2—C5 | 1.373 (2) | C7—C8 | 1.389 (2) |
| N2—C6 | 1.4175 (19) | C7—H7A | 0.9300 |
| N2—H1N | 0.84 (2) | C8—C9 | 1.379 (2) |
| C1—C2 | 1.499 (3) | C8—H8A | 0.9300 |
| C1—H1A | 0.9700 | C9—C10 | 1.381 (3) |
| C1—H1B | 0.9700 | C10—C11 | 1.381 (2) |
| C2—H2B | 0.9700 | C10—H10A | 0.9300 |
| C2—H2C | 0.9700 | C11—H11A | 0.9300 |
| C1—O1—C4 | 110.71 (16) | O1—C4—H4A | 109.2 |
| C5—N1—C3 | 126.33 (14) | C3—C4—H4A | 109.2 |
| C5—N1—C2 | 120.22 (14) | O1—C4—H4B | 109.2 |
| C3—N1—C2 | 113.14 (13) | C3—C4—H4B | 109.2 |
| C5—N2—C6 | 122.11 (14) | H4A—C4—H4B | 107.9 |
| C5—N2—H1N | 117.2 (13) | O2—C5—N1 | 121.93 (14) |
| C6—N2—H1N | 116.0 (13) | O2—C5—N2 | 122.28 (14) |
| O1—C1—C2 | 110.80 (19) | N1—C5—N2 | 115.78 (13) |
| O1—C1—H1A | 109.5 | C7—C6—C11 | 119.67 (15) |
| C2—C1—H1A | 109.5 | C7—C6—N2 | 119.12 (14) |
| O1—C1—H1B | 109.5 | C11—C6—N2 | 121.19 (14) |
| C2—C1—H1B | 109.5 | C6—C7—C8 | 120.16 (15) |
| H1A—C1—H1B | 108.1 | C6—C7—H7A | 119.9 |
| N1—C2—C1 | 109.42 (17) | C8—C7—H7A | 119.9 |
| N1—C2—H2B | 109.8 | C9—C8—C7 | 119.14 (16) |
| C1—C2—H2B | 109.8 | C9—C8—H8A | 120.4 |
| N1—C2—H2C | 109.8 | C7—C8—H8A | 120.4 |
| C1—C2—H2C | 109.8 | C8—C9—C10 | 121.34 (15) |
| H2B—C2—H2C | 108.2 | C8—C9—Cl1 | 119.59 (14) |
| N1—C3—C4 | 109.94 (15) | C10—C9—Cl1 | 119.06 (14) |
| N1—C3—H3A | 109.7 | C11—C10—C9 | 119.06 (16) |
| C4—C3—H3A | 109.7 | C11—C10—H10A | 120.5 |
| N1—C3—H3B | 109.7 | C9—C10—H10A | 120.5 |
| C4—C3—H3B | 109.7 | C10—C11—C6 | 120.59 (16) |
| H3A—C3—H3B | 108.2 | C10—C11—H11A | 119.7 |
| O1—C4—C3 | 112.21 (18) | C6—C11—H11A | 119.7 |
| C4—O1—C1—C2 | −60.2 (3) | C6—N2—C5—N1 | 177.97 (15) |
| C5—N1—C2—C1 | 120.4 (2) | C5—N2—C6—C7 | 130.52 (17) |
| C3—N1—C2—C1 | −53.6 (2) | C5—N2—C6—C11 | −51.2 (2) |
| O1—C1—C2—N1 | 57.1 (3) | C11—C6—C7—C8 | 1.6 (2) |
| C5—N1—C3—C4 | −121.82 (19) | N2—C6—C7—C8 | 179.86 (15) |
| C2—N1—C3—C4 | 51.7 (2) | C6—C7—C8—C9 | 0.1 (2) |
| C1—O1—C4—C3 | 58.8 (3) | C7—C8—C9—C10 | −1.6 (3) |
| N1—C3—C4—O1 | −53.6 (2) | C7—C8—C9—Cl1 | 179.34 (13) |
| C3—N1—C5—O2 | 166.36 (17) | C8—C9—C10—C11 | 1.3 (3) |
| C2—N1—C5—O2 | −6.8 (3) | Cl1—C9—C10—C11 | −179.61 (13) |
| C3—N1—C5—N2 | −14.0 (2) | C9—C10—C11—C6 | 0.4 (3) |
| C2—N1—C5—N2 | 172.86 (16) | C7—C6—C11—C10 | −1.8 (2) |
| C6—N2—C5—O2 | −2.4 (2) | N2—C6—C11—C10 | 179.88 (15) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H1N···O2i | 0.838 (19) | 2.114 (19) | 2.9226 (19) | 162.2 (19) |
Symmetry codes: (i) x+1/2, y, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5309).
References
- Arrieta, A., Otaegui, D., Zubia, A., Cossío, F. P., Díaz-Ortiz, A., Hoz, A., Herrero, A., Prieto, P., Foces-Foces, C., Pizarro, J. L. & Arriortua, M. I. (2007). J. Org. Chem. 72, 4313–4322. [DOI] [PubMed]
- Bruker (1997). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Li, Y.-F. (2011a). Acta Cryst. E67, o1796. [DOI] [PMC free article] [PubMed]
- Li, Y.-F. (2011b). Acta Cryst. E67, o1792. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811034611/lh5309sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034611/lh5309Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811034611/lh5309Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

