Abstract
In the title compound, C13H18N2O4S, the piperazine ring adopts a chair conformation. The dihedral angle between the least-squares planes through the piperazine and benzene rings is 73.23 (10)°. In the crystal, there are no classical hydrogen bonds but stabilization is provided by weak C—H⋯π interactions.
Related literature
For the biological activity of piperazine derivatives, see: Emami et al. (2006 ▶); Foroumadi et al. (2007 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).
Experimental
Crystal data
C13H18N2O4S
M r = 298.35
Monoclinic,
a = 6.1433 (5) Å
b = 20.5966 (17) Å
c = 12.5626 (8) Å
β = 114.026 (3)°
V = 1451.84 (19) Å3
Z = 4
Mo Kα radiation
μ = 0.24 mm−1
T = 296 K
0.58 × 0.38 × 0.17 mm
Data collection
Bruker APEXII DUO CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.875, T max = 0.961
16507 measured reflections
4255 independent reflections
3400 reflections with I > 2σ(I)
R int = 0.023
Refinement
R[F 2 > 2σ(F 2)] = 0.048
wR(F 2) = 0.158
S = 1.04
4255 reflections
182 parameters
H-atom parameters constrained
Δρmax = 0.60 e Å−3
Δρmin = −0.30 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033162/tk2781sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033162/tk2781Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811033162/tk2781Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the C1–C6 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C13—H13A⋯Cg1i | 0.96 | 2.97 | 3.900 (4) | 165 |
Symmetry code: (i)
.
Acknowledgments
NM gratefully acknowledges funding from the Malaysian Ministry of Science, Technology and Innovation, through the Malaysian Institute of Pharmaceutical and Nutraceutical R&D Initiative Grant (grant No. 09-05-IFN-MEB 004 and 304/PFARMASI/650512/I121). HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for the Research University Grant No. 1001/PFIZIK/811160. MH also thanks Universiti Sains Malaysia for a post-doctoral research fellowship.
supplementary crystallographic information
Comment
Piperazine derivatives are used as antibiotic drugs, e.g. Norfloxacin, Ciprofloxacin, Enoxacin, Ofloxacin and Levofloxacine (Emami et al., 2006; Foroumadi et al., 2007). Due to the biological importance of piperazine, herein, we present the crystal and molecular structure of the title compound, (I).
The piperazine (N1–N2/C7–C10) ring in (I), Fig. 1, adopts a chair conformation [puckering parameters: Q = 0.5682 (18) Å, θ = 2.56 (17) ° and φ = 349 (4) ° (Cremer & Pople, 1975)] with atoms N1 and C9 deviating by 0.253 (1) and 0.223 (2) Å from the least-squares plane defined by the remaining atoms (N2/C7,C8/C10) in the ring. The dihedral angle between the piperazine (N1–N2/C7–C10) ring and the benzene (C1–C6) ring is 73.23 (10) °.
In the crystal structure (Fig. 2), there are no classical hydrogen bonds but stabilization is provided by weak C—H···π interactions (Table 1).
Experimental
In a round bottom flask, 25ml of toluene was mixed with benzenesulfonyl chloride (0.01 mol, 1.0 g) with stirring. Ethyl-1-piperazine-carboxylate (0.01 mol, 1.7ml) dissolved in toluene was then added drop wise. The reaction mixture was refluxed for 30 min. The yellow precipitate formed was washed with alkaline water. The precipitate was then dissolved in methanol at room temperature. After few days, yellow crystals were formed by slow evaporation.
Refinement
All hydrogen atoms were positioned geometrically [C–H = 0.93–0.97 Å] and were refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating group model was applied to the methyl group.
Figures
Fig. 1.
The molecular structure of (I), showing the atom labelling scheme and 50% probability displacement ellipsoids.
Fig. 2.
A view of the crystal packing in (I).
Crystal data
| C13H18N2O4S | F(000) = 632 |
| Mr = 298.35 | Dx = 1.365 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 5957 reflections |
| a = 6.1433 (5) Å | θ = 2.7–29.7° |
| b = 20.5966 (17) Å | µ = 0.24 mm−1 |
| c = 12.5626 (8) Å | T = 296 K |
| β = 114.026 (3)° | Block, yellow |
| V = 1451.84 (19) Å3 | 0.58 × 0.38 × 0.17 mm |
| Z = 4 |
Data collection
| Bruker APEXII DUO CCD area-detector diffractometer | 4255 independent reflections |
| Radiation source: fine-focus sealed tube | 3400 reflections with I > 2σ(I) |
| graphite | Rint = 0.023 |
| φ and ω scans | θmax = 30.1°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −8→8 |
| Tmin = 0.875, Tmax = 0.961 | k = −29→24 |
| 16507 measured reflections | l = −17→17 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.158 | H-atom parameters constrained |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0887P)2 + 0.3986P] where P = (Fo2 + 2Fc2)/3 |
| 4255 reflections | (Δ/σ)max = 0.001 |
| 182 parameters | Δρmax = 0.60 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
Special details
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.36299 (7) | −0.120155 (19) | 0.94030 (3) | 0.03858 (14) | |
| O1 | 0.3060 (3) | −0.12052 (6) | 1.04000 (10) | 0.0517 (3) | |
| O2 | 0.6074 (2) | −0.12032 (7) | 0.95617 (12) | 0.0547 (3) | |
| O3 | −0.1090 (3) | 0.07756 (8) | 0.52229 (12) | 0.0659 (4) | |
| O4 | −0.3840 (2) | 0.07205 (8) | 0.59831 (12) | 0.0605 (4) | |
| N1 | 0.2424 (2) | −0.05482 (6) | 0.86538 (10) | 0.0346 (3) | |
| N2 | −0.0094 (2) | 0.04239 (7) | 0.70682 (12) | 0.0412 (3) | |
| C1 | 0.0247 (4) | −0.21553 (9) | 0.86231 (18) | 0.0544 (4) | |
| H1A | −0.0323 | −0.1999 | 0.9156 | 0.065* | |
| C2 | −0.0839 (4) | −0.26783 (11) | 0.7902 (2) | 0.0749 (7) | |
| H2A | −0.2149 | −0.2877 | 0.7957 | 0.090* | |
| C3 | −0.0001 (5) | −0.29053 (11) | 0.7108 (2) | 0.0813 (8) | |
| H3A | −0.0749 | −0.3255 | 0.6630 | 0.098* | |
| C4 | 0.1924 (5) | −0.26197 (12) | 0.7021 (2) | 0.0785 (7) | |
| H4A | 0.2477 | −0.2776 | 0.6482 | 0.094* | |
| C5 | 0.3063 (4) | −0.20992 (11) | 0.77261 (18) | 0.0595 (5) | |
| H5A | 0.4375 | −0.1905 | 0.7666 | 0.071* | |
| C6 | 0.2208 (3) | −0.18732 (8) | 0.85247 (14) | 0.0421 (3) | |
| C7 | −0.0086 (3) | −0.04191 (8) | 0.84341 (13) | 0.0376 (3) | |
| H7A | −0.0340 | −0.0501 | 0.9135 | 0.045* | |
| H7B | −0.1126 | −0.0704 | 0.7824 | 0.045* | |
| C8 | −0.0652 (3) | 0.02844 (8) | 0.80650 (14) | 0.0406 (3) | |
| H8A | −0.2328 | 0.0367 | 0.7862 | 0.049* | |
| H8B | 0.0271 | 0.0567 | 0.8708 | 0.049* | |
| C9 | 0.2364 (3) | 0.02842 (9) | 0.72652 (16) | 0.0472 (4) | |
| H9A | 0.3431 | 0.0565 | 0.7873 | 0.057* | |
| H9B | 0.2594 | 0.0367 | 0.6558 | 0.057* | |
| C10 | 0.2931 (3) | −0.04207 (9) | 0.76225 (14) | 0.0423 (3) | |
| H10A | 0.1969 | −0.0703 | 0.6987 | 0.051* | |
| H10B | 0.4597 | −0.0508 | 0.7804 | 0.051* | |
| C11 | −0.1625 (3) | 0.06530 (8) | 0.60275 (14) | 0.0436 (4) | |
| C12 | −0.5669 (4) | 0.09306 (12) | 0.48616 (18) | 0.0637 (5) | |
| H12A | −0.5300 | 0.0763 | 0.4233 | 0.076* | |
| H12C | −0.7206 | 0.0759 | 0.4769 | 0.076* | |
| C13 | −0.5775 (7) | 0.16308 (16) | 0.4804 (3) | 0.1174 (13) | |
| H13A | −0.6971 | 0.1763 | 0.4064 | 0.176* | |
| H13B | −0.4254 | 0.1799 | 0.4891 | 0.176* | |
| H13C | −0.6170 | 0.1795 | 0.5418 | 0.176* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0397 (2) | 0.0421 (2) | 0.0286 (2) | 0.00210 (13) | 0.00853 (15) | 0.00111 (13) |
| O1 | 0.0710 (9) | 0.0526 (7) | 0.0297 (6) | 0.0009 (6) | 0.0187 (6) | 0.0025 (5) |
| O2 | 0.0368 (6) | 0.0628 (8) | 0.0521 (8) | 0.0056 (5) | 0.0053 (5) | 0.0070 (6) |
| O3 | 0.0668 (9) | 0.0926 (11) | 0.0443 (7) | 0.0176 (8) | 0.0288 (6) | 0.0217 (7) |
| O4 | 0.0449 (7) | 0.0863 (10) | 0.0481 (7) | 0.0147 (6) | 0.0167 (6) | 0.0204 (7) |
| N1 | 0.0342 (6) | 0.0394 (6) | 0.0305 (6) | 0.0018 (5) | 0.0136 (5) | 0.0023 (5) |
| N2 | 0.0382 (6) | 0.0502 (7) | 0.0376 (6) | 0.0057 (5) | 0.0179 (5) | 0.0107 (6) |
| C1 | 0.0568 (10) | 0.0465 (9) | 0.0550 (10) | −0.0022 (8) | 0.0178 (8) | 0.0017 (8) |
| C2 | 0.0690 (14) | 0.0462 (11) | 0.0853 (17) | −0.0098 (9) | 0.0065 (12) | 0.0024 (11) |
| C3 | 0.0979 (19) | 0.0399 (10) | 0.0691 (15) | 0.0061 (11) | −0.0039 (13) | −0.0143 (10) |
| C4 | 0.1010 (19) | 0.0625 (14) | 0.0608 (13) | 0.0193 (13) | 0.0213 (13) | −0.0212 (11) |
| C5 | 0.0699 (12) | 0.0580 (11) | 0.0521 (10) | 0.0106 (9) | 0.0262 (9) | −0.0092 (9) |
| C6 | 0.0470 (8) | 0.0366 (8) | 0.0374 (7) | 0.0065 (6) | 0.0119 (6) | 0.0000 (6) |
| C7 | 0.0366 (7) | 0.0439 (8) | 0.0364 (7) | 0.0003 (6) | 0.0192 (6) | 0.0037 (6) |
| C8 | 0.0435 (7) | 0.0449 (8) | 0.0373 (7) | 0.0074 (6) | 0.0205 (6) | 0.0040 (6) |
| C9 | 0.0376 (7) | 0.0587 (10) | 0.0494 (9) | 0.0020 (7) | 0.0220 (7) | 0.0164 (8) |
| C10 | 0.0380 (7) | 0.0556 (9) | 0.0386 (8) | 0.0075 (6) | 0.0210 (6) | 0.0076 (7) |
| C11 | 0.0455 (8) | 0.0477 (9) | 0.0375 (8) | 0.0038 (6) | 0.0169 (6) | 0.0053 (6) |
| C12 | 0.0510 (10) | 0.0811 (15) | 0.0494 (10) | 0.0032 (10) | 0.0104 (8) | 0.0043 (10) |
| C13 | 0.131 (3) | 0.077 (2) | 0.101 (2) | 0.0254 (18) | 0.003 (2) | 0.0136 (17) |
Geometric parameters (Å, °)
| S1—O1 | 1.4312 (13) | C4—H4A | 0.9300 |
| S1—O2 | 1.4320 (14) | C5—C6 | 1.389 (2) |
| S1—N1 | 1.6365 (13) | C5—H5A | 0.9300 |
| S1—C6 | 1.7634 (17) | C7—C8 | 1.518 (2) |
| O3—C11 | 1.210 (2) | C7—H7A | 0.9700 |
| O4—C11 | 1.346 (2) | C7—H7B | 0.9700 |
| O4—C12 | 1.465 (2) | C8—H8A | 0.9700 |
| N1—C10 | 1.4745 (18) | C8—H8B | 0.9700 |
| N1—C7 | 1.4755 (18) | C9—C10 | 1.518 (2) |
| N2—C11 | 1.347 (2) | C9—H9A | 0.9700 |
| N2—C8 | 1.4554 (19) | C9—H9B | 0.9700 |
| N2—C9 | 1.455 (2) | C10—H10A | 0.9700 |
| C1—C6 | 1.387 (3) | C10—H10B | 0.9700 |
| C1—C2 | 1.391 (3) | C12—C13 | 1.444 (4) |
| C1—H1A | 0.9300 | C12—H12A | 0.9700 |
| C2—C3 | 1.377 (4) | C12—H12C | 0.9700 |
| C2—H2A | 0.9300 | C13—H13A | 0.9600 |
| C3—C4 | 1.365 (4) | C13—H13B | 0.9600 |
| C3—H3A | 0.9300 | C13—H13C | 0.9600 |
| C4—C5 | 1.385 (3) | ||
| O1—S1—O2 | 119.62 (9) | C8—C7—H7B | 109.9 |
| O1—S1—N1 | 107.02 (7) | H7A—C7—H7B | 108.3 |
| O2—S1—N1 | 106.60 (7) | N2—C8—C7 | 110.26 (12) |
| O1—S1—C6 | 107.94 (8) | N2—C8—H8A | 109.6 |
| O2—S1—C6 | 108.04 (8) | C7—C8—H8A | 109.6 |
| N1—S1—C6 | 107.00 (7) | N2—C8—H8B | 109.6 |
| C11—O4—C12 | 115.91 (15) | C7—C8—H8B | 109.6 |
| C10—N1—C7 | 112.47 (11) | H8A—C8—H8B | 108.1 |
| C10—N1—S1 | 116.33 (10) | N2—C9—C10 | 109.69 (13) |
| C7—N1—S1 | 116.73 (10) | N2—C9—H9A | 109.7 |
| C11—N2—C8 | 126.01 (13) | C10—C9—H9A | 109.7 |
| C11—N2—C9 | 120.02 (13) | N2—C9—H9B | 109.7 |
| C8—N2—C9 | 113.96 (12) | C10—C9—H9B | 109.7 |
| C6—C1—C2 | 118.1 (2) | H9A—C9—H9B | 108.2 |
| C6—C1—H1A | 121.0 | N1—C10—C9 | 108.96 (13) |
| C2—C1—H1A | 121.0 | N1—C10—H10A | 109.9 |
| C3—C2—C1 | 120.9 (2) | C9—C10—H10A | 109.9 |
| C3—C2—H2A | 119.6 | N1—C10—H10B | 109.9 |
| C1—C2—H2A | 119.6 | C9—C10—H10B | 109.9 |
| C4—C3—C2 | 120.2 (2) | H10A—C10—H10B | 108.3 |
| C4—C3—H3A | 119.9 | O3—C11—O4 | 123.90 (15) |
| C2—C3—H3A | 119.9 | O3—C11—N2 | 124.31 (16) |
| C3—C4—C5 | 120.7 (2) | O4—C11—N2 | 111.78 (14) |
| C3—C4—H4A | 119.6 | C13—C12—O4 | 110.2 (2) |
| C5—C4—H4A | 119.6 | C13—C12—H12A | 109.6 |
| C4—C5—C6 | 118.7 (2) | O4—C12—H12A | 109.6 |
| C4—C5—H5A | 120.7 | C13—C12—H12C | 109.6 |
| C6—C5—H5A | 120.7 | O4—C12—H12C | 109.6 |
| C1—C6—C5 | 121.44 (18) | H12A—C12—H12C | 108.1 |
| C1—C6—S1 | 119.99 (14) | C12—C13—H13A | 109.5 |
| C5—C6—S1 | 118.55 (15) | C12—C13—H13B | 109.5 |
| N1—C7—C8 | 108.73 (12) | H13A—C13—H13B | 109.5 |
| N1—C7—H7A | 109.9 | C12—C13—H13C | 109.5 |
| C8—C7—H7A | 109.9 | H13A—C13—H13C | 109.5 |
| N1—C7—H7B | 109.9 | H13B—C13—H13C | 109.5 |
| O1—S1—N1—C10 | 175.82 (11) | N1—S1—C6—C5 | 85.65 (15) |
| O2—S1—N1—C10 | 46.71 (13) | C10—N1—C7—C8 | −58.52 (17) |
| C6—S1—N1—C10 | −68.69 (13) | S1—N1—C7—C8 | 163.26 (10) |
| O1—S1—N1—C7 | −47.57 (12) | C11—N2—C8—C7 | 122.68 (18) |
| O2—S1—N1—C7 | −176.67 (11) | C9—N2—C8—C7 | −56.43 (18) |
| C6—S1—N1—C7 | 67.92 (12) | N1—C7—C8—N2 | 55.05 (16) |
| C6—C1—C2—C3 | −0.5 (3) | C11—N2—C9—C10 | −122.59 (17) |
| C1—C2—C3—C4 | 0.2 (4) | C8—N2—C9—C10 | 56.58 (19) |
| C2—C3—C4—C5 | 0.0 (4) | C7—N1—C10—C9 | 59.10 (17) |
| C3—C4—C5—C6 | 0.0 (3) | S1—N1—C10—C9 | −162.49 (11) |
| C2—C1—C6—C5 | 0.5 (3) | N2—C9—C10—N1 | −55.79 (18) |
| C2—C1—C6—S1 | 179.12 (15) | C12—O4—C11—O3 | 2.6 (3) |
| C4—C5—C6—C1 | −0.3 (3) | C12—O4—C11—N2 | −176.51 (17) |
| C4—C5—C6—S1 | −178.91 (16) | C8—N2—C11—O3 | 178.53 (18) |
| O1—S1—C6—C1 | 21.89 (16) | C9—N2—C11—O3 | −2.4 (3) |
| O2—S1—C6—C1 | 152.57 (14) | C8—N2—C11—O4 | −2.4 (2) |
| N1—S1—C6—C1 | −92.99 (15) | C9—N2—C11—O4 | 176.66 (15) |
| O1—S1—C6—C5 | −159.47 (14) | C11—O4—C12—C13 | −88.6 (3) |
| O2—S1—C6—C5 | −28.79 (17) |
Hydrogen-bond geometry (Å, °)
| Cg1 is the centroid of the C1–C6 ring. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| C13—H13A···Cg1i | 0.96 | 2.97 | 3.900 (4) | 165 |
Symmetry codes: (i) −x−1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2781).
References
- Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
- Emami, S., Shafiee, A. & Foroumadi, A. (2006). Mini Rev. Med. Chem. 6, 375–386. [DOI] [PubMed]
- Foroumadi, A., Emami, S., Mansouri, S., Javidnia, A., Saeid-Adeli, N., Shirazi, F. H. & Shafiee, A. (2007). Eur. J. Med. Chem. 42, 985–992. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033162/tk2781sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033162/tk2781Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811033162/tk2781Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


