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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 27;67(Pt 9):o2457. doi: 10.1107/S1600536811034520

2-(5-{6-[5-(Pyrazin-2-yl)-1H-1,2,4-triazol-3-yl]pyridin-2-yl}-1H-1,2,4-triazol-3-yl)pyrazine

Zhouqing Xu a, Yanchun Sun b, Qiang Wang a,*
PMCID: PMC3200783  PMID: 22064978

Abstract

In the title mol­ecule, C17H11N11, the five rings are almost coplanar [maxium deviation 0.1949 (1) Å]. The dihedral angles between the two pyrazine rings and the two triazole rings are 1.52 (4) and 2.51 (5)°, respectively. The central pyridine ring forms dihedral angles of 5.57 (1) and 1.71 (1)° with the two triazole rings. The crystal packing consists of a three-dimensional network structure generated by inter­molecular N—H⋯N hydrogen bonds. The crystal structure is further consolidated by π–π stacking [centroid-to-centroid distances 3.599 (10) and 4.769 (13) Å].

Related literature

For the applications of compounds containing triazole subunits, see: Zhang et al. (2010); Fischer (2007); Ouellette et al. (2007). For a recent study, see: Xu et al. (2011). For the synthesis, see: Browne (1975); Klingele & Brooker (2004). graphic file with name e-67-o2457-scheme1.jpg

Experimental

Crystal data

  • C17H11N11

  • M r = 369.37

  • Monoclinic, Inline graphic

  • a = 10.751 (2) Å

  • b = 13.721 (3) Å

  • c = 11.385 (2) Å

  • β = 102.57 (3)°

  • V = 1639.2 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 293 K

  • 0.20 × 0.20 × 0.20 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2003) T min = 0.905, T max = 1.000

  • 17628 measured reflections

  • 3204 independent reflections

  • 2896 reflections with I > 2σ(I)

  • R int = 0.048

Refinement

  • R[F 2 > 2σ(F 2)] = 0.064

  • wR(F 2) = 0.125

  • S = 1.22

  • 3204 reflections

  • 259 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.17 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: APEX2 (Bruker, 2003); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811034520/ng5216sup1.cif

e-67-o2457-sup1.cif (17.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034520/ng5216Isup2.hkl

e-67-o2457-Isup2.hkl (157.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811034520/ng5216Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N8—H34⋯N12i 0.96 (2) 1.92 (2) 2.817 (3) 155 (2)
N4—H35⋯N13ii 0.92 (2) 2.21 (2) 3.113 (3) 167 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the Natural Science Research Programme of the Education Department of Henan Province (grant No. 2011 A150015), the Henan Polytechnic University Foundation for Youth (grant No. P051102) and the Henan Polytechnic University Foundation for Doctoral Teachers (grant No. B2010-65). The authors thank Dr D. Zhao for assistance with the data analysis.

supplementary crystallographic information

Comment

Compounds containing triazole subunits have been intensively studied owing to diverse biological properties and also to the ease of complexation (Zhang et al., 2010; Fischer, 2007; Ouellette et al., 2007). In continuation with a recent study (Xu et al., 2011), we report the title compound (Scheme I), 2-(5-(6-(5-(pyrazin-2-yl)-1H-1,2,4-triazol-3-yl)pyridin-2-yl)-1H-1,2,4-triazol-3-yl)pyrazine.

The five rings are almost coplanar (maxium deviation = 0.1949 (1) Å). The dihedral angles between the two pyrazine rings and the two triazole rings are 1.52 (4) and 2.51 (5)°, respectively. The central pyridine ring forms dihedral angles of 5.57 (1) and 1.71 (1)° with the two triazole rings (Fig. 1). The crystal packing consists of a three-dimensional net structure generated by intermolecular N—H···N hydrogen bonds. The crystal structure is further consolidated by π–π stacking [centroid–centroid distances = 3.599 (10) and 4.769 (13) Å].

Experimental

2-(5-(6-(5-(pyrazin-2-yl)-1H-1,2,4-triazol-3-yl)pyridin-2-yl)-1H-1,2,4-triazol-3-yl)pyrazine was prepared according to Browne (1975) and Klingele & Brooker (2004). The crystals suitable for crystallographic analysis were grown by recrystallization from DMF and ethanol solution as colorless prism.

Refinement

N-bound H atoms were located in a difference map and refined freely. C-bound H atoms were positioned geometrically (C—H = 0.94 Å) and were constrained in a riding motion approximation with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

A partial packing diagram of the title compound. Hydrogen bonds are shown as dashed lines, viewed down the a axis.

Crystal data

C17H11N11 F(000) = 760
Mr = 369.37 Dx = 1.497 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4186 reflections
a = 10.751 (2) Å θ = 1.9–27.1°
b = 13.721 (3) Å µ = 0.10 mm1
c = 11.385 (2) Å T = 293 K
β = 102.57 (3)° Prism, colourless
V = 1639.2 (6) Å3 0.20 × 0.20 × 0.20 mm
Z = 4

Data collection

Bruker SMART APEX diffractometer 3204 independent reflections
Radiation source: fine-focus sealed tube 2896 reflections with I > 2σ(I)
graphite Rint = 0.048
ω scans θmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) h = −13→13
Tmin = 0.905, Tmax = 1.000 k = −16→16
17628 measured reflections l = −13→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125 H atoms treated by a mixture of independent and constrained refinement
S = 1.22 w = 1/[σ2(Fo2) + (0.042P)2 + 0.4894P] where P = (Fo2 + 2Fc2)/3
3204 reflections (Δ/σ)max < 0.001
259 parameters Δρmax = 0.17 e Å3
0 restraints Δρmin = −0.18 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N7 0.80331 (17) 0.04695 (12) 0.48120 (15) 0.0328 (4)
N3 0.65636 (17) 0.55996 (12) 0.51910 (15) 0.0338 (4)
N6 0.74831 (16) 0.30212 (12) 0.54161 (15) 0.0324 (4)
N1 0.67651 (19) 0.77043 (13) 0.71611 (16) 0.0429 (5)
N4 0.73685 (19) 0.56738 (13) 0.71244 (16) 0.0391 (5)
H35 0.764 (2) 0.5883 (17) 0.791 (2) 0.047*
N5 0.75302 (19) 0.47317 (13) 0.68211 (16) 0.0412 (5)
C19 0.9825 (2) −0.15553 (16) 0.66349 (19) 0.0382 (5)
H19 1.0142 −0.1196 0.7328 0.046*
C1 0.90635 (19) −0.10896 (14) 0.56482 (18) 0.0308 (5)
N9 0.91344 (18) 0.04313 (13) 0.67510 (16) 0.0401 (5)
C2 0.64501 (19) 0.72112 (15) 0.61304 (18) 0.0308 (5)
C3 0.6795 (2) 0.61778 (15) 0.61474 (18) 0.0311 (5)
N8 0.86523 (18) 0.13308 (13) 0.64512 (17) 0.0387 (5)
H34 0.887 (2) 0.1853 (17) 0.702 (2) 0.046*
C4 0.87349 (19) −0.00581 (14) 0.57292 (18) 0.0307 (5)
N13 0.86310 (17) −0.15592 (13) 0.46165 (16) 0.0365 (4)
N12 1.01117 (18) −0.24929 (13) 0.66175 (17) 0.0412 (5)
C7 0.6963 (2) 0.38491 (14) 0.48938 (18) 0.0311 (5)
C8 0.8012 (2) 0.13480 (15) 0.52990 (18) 0.0307 (5)
C9 0.7024 (2) 0.47236 (14) 0.56489 (18) 0.0318 (5)
C10 0.6893 (2) 0.22266 (16) 0.34824 (19) 0.0368 (5)
H10 0.6895 0.1666 0.3023 0.044*
C23 0.6418 (3) 0.86407 (17) 0.7106 (2) 0.0495 (6)
H23 0.6623 0.9015 0.7802 0.059*
C12 0.74258 (19) 0.22300 (14) 0.47064 (18) 0.0306 (5)
C18 0.8945 (2) −0.25062 (16) 0.4604 (2) 0.0406 (6)
H18 0.8673 −0.2861 0.3899 0.049*
N2 0.54644 (19) 0.85860 (14) 0.50318 (17) 0.0447 (5)
C13 0.9652 (2) −0.29676 (16) 0.5592 (2) 0.0410 (6)
H13 0.9816 −0.3631 0.5548 0.049*
C14 0.6359 (2) 0.30832 (16) 0.2967 (2) 0.0393 (5)
H14 0.5992 0.3110 0.2149 0.047*
C15 0.5771 (2) 0.90720 (17) 0.6064 (2) 0.0468 (6)
H15 0.5541 0.9724 0.6081 0.056*
C16 0.6376 (2) 0.38988 (15) 0.36799 (19) 0.0363 (5)
H16 0.5999 0.4476 0.3352 0.044*
C22 0.5812 (2) 0.76535 (16) 0.5078 (2) 0.0396 (5)
H22 0.5619 0.7285 0.4377 0.048*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N7 0.0419 (10) 0.0238 (9) 0.0304 (9) 0.0030 (8) 0.0026 (8) 0.0000 (7)
N3 0.0461 (11) 0.0226 (9) 0.0304 (9) 0.0026 (8) 0.0033 (8) −0.0003 (7)
N6 0.0418 (10) 0.0226 (9) 0.0314 (9) 0.0008 (8) 0.0049 (8) −0.0015 (7)
N1 0.0583 (12) 0.0295 (10) 0.0348 (10) 0.0045 (9) −0.0030 (9) −0.0043 (8)
N4 0.0593 (13) 0.0247 (10) 0.0288 (10) 0.0048 (9) −0.0001 (9) −0.0029 (8)
N5 0.0619 (13) 0.0242 (10) 0.0334 (10) 0.0060 (9) 0.0013 (9) −0.0006 (8)
C19 0.0474 (13) 0.0293 (12) 0.0336 (12) −0.0008 (10) −0.0007 (10) 0.0024 (9)
C1 0.0340 (11) 0.0257 (11) 0.0312 (11) −0.0026 (9) 0.0034 (9) −0.0002 (8)
N9 0.0505 (11) 0.0277 (10) 0.0363 (10) 0.0023 (8) −0.0033 (9) −0.0028 (8)
C2 0.0363 (11) 0.0246 (11) 0.0305 (11) 0.0020 (9) 0.0048 (9) 0.0004 (8)
C3 0.0376 (11) 0.0258 (11) 0.0281 (11) 0.0016 (9) 0.0032 (9) 0.0000 (8)
N8 0.0518 (12) 0.0241 (10) 0.0359 (11) 0.0015 (8) 0.0002 (9) −0.0050 (8)
C4 0.0373 (12) 0.0230 (10) 0.0300 (11) −0.0009 (9) 0.0032 (9) 0.0004 (8)
N13 0.0445 (11) 0.0278 (10) 0.0345 (10) 0.0011 (8) 0.0025 (8) −0.0006 (8)
N12 0.0453 (11) 0.0314 (11) 0.0427 (11) 0.0023 (9) 0.0003 (9) 0.0073 (9)
C7 0.0372 (11) 0.0244 (11) 0.0307 (11) −0.0010 (9) 0.0052 (9) 0.0010 (8)
C8 0.0367 (11) 0.0248 (10) 0.0299 (11) −0.0012 (9) 0.0056 (9) −0.0023 (8)
C9 0.0401 (12) 0.0230 (10) 0.0302 (11) 0.0009 (9) 0.0030 (9) 0.0005 (8)
C10 0.0468 (13) 0.0270 (12) 0.0355 (12) 0.0001 (10) 0.0068 (10) −0.0055 (9)
C23 0.0717 (17) 0.0291 (13) 0.0412 (13) 0.0063 (12) −0.0017 (12) −0.0085 (10)
C12 0.0358 (11) 0.0239 (11) 0.0317 (11) −0.0007 (9) 0.0065 (9) −0.0023 (8)
C18 0.0488 (13) 0.0291 (12) 0.0399 (13) 0.0030 (10) 0.0004 (11) −0.0065 (10)
N2 0.0603 (13) 0.0323 (11) 0.0390 (11) 0.0109 (9) 0.0051 (10) 0.0030 (8)
C13 0.0437 (13) 0.0267 (12) 0.0493 (14) 0.0019 (10) 0.0031 (11) 0.0021 (10)
C14 0.0501 (14) 0.0348 (13) 0.0297 (12) −0.0002 (10) 0.0018 (10) 0.0000 (9)
C15 0.0606 (16) 0.0272 (12) 0.0493 (14) 0.0089 (11) 0.0049 (12) −0.0014 (11)
C16 0.0470 (13) 0.0261 (11) 0.0333 (12) 0.0014 (10) 0.0031 (10) 0.0022 (9)
C22 0.0515 (14) 0.0296 (12) 0.0354 (12) 0.0064 (10) 0.0041 (11) −0.0025 (9)

Geometric parameters (Å, °)

N7—C8 1.329 (2) N8—H34 0.96 (2)
N7—C4 1.357 (3) N13—C18 1.343 (3)
N3—C3 1.326 (2) N12—C13 1.334 (3)
N3—C9 1.360 (2) C7—C16 1.390 (3)
N6—C7 1.346 (2) C7—C9 1.469 (3)
N6—C12 1.347 (2) C8—C12 1.460 (3)
N1—C2 1.333 (3) C10—C14 1.381 (3)
N1—C23 1.336 (3) C10—C12 1.387 (3)
N4—C3 1.340 (3) C10—H10 0.9300
N4—N5 1.359 (2) C23—C15 1.372 (3)
N4—H35 0.92 (2) C23—H23 0.9300
N5—C9 1.327 (3) C18—C13 1.368 (3)
C19—N12 1.324 (3) C18—H18 0.9300
C19—C1 1.393 (3) N2—C15 1.329 (3)
C19—H19 0.9300 N2—C22 1.331 (3)
C1—N13 1.332 (3) C13—H13 0.9300
C1—C4 1.467 (3) C14—C16 1.380 (3)
N9—C4 1.331 (3) C14—H14 0.9300
N9—N8 1.353 (2) C15—H15 0.9300
C2—C22 1.384 (3) C16—H16 0.9300
C2—C3 1.465 (3) C22—H22 0.9300
N8—C8 1.342 (3)
C8—N7—C4 102.71 (16) N7—C8—C12 127.14 (18)
C3—N3—C9 103.07 (16) N8—C8—C12 122.96 (18)
C7—N6—C12 117.06 (17) N5—C9—N3 114.43 (18)
C2—N1—C23 115.61 (19) N5—C9—C7 123.46 (18)
C3—N4—N5 109.94 (17) N3—C9—C7 122.10 (18)
C3—N4—H35 129.4 (15) C14—C10—C12 117.8 (2)
N5—N4—H35 120.7 (15) C14—C10—H10 121.1
C9—N5—N4 102.49 (17) C12—C10—H10 121.1
N12—C19—C1 122.1 (2) N1—C23—C15 122.6 (2)
N12—C19—H19 118.9 N1—C23—H23 118.7
C1—C19—H19 118.9 C15—C23—H23 118.7
N13—C1—C19 121.37 (19) N6—C12—C10 124.10 (19)
N13—C1—C4 118.67 (18) N6—C12—C8 115.60 (18)
C19—C1—C4 119.95 (18) C10—C12—C8 120.26 (18)
C4—N9—N8 101.92 (17) N13—C18—C13 122.4 (2)
N1—C2—C22 121.49 (19) N13—C18—H18 118.8
N1—C2—C3 117.69 (18) C13—C18—H18 118.8
C22—C2—C3 120.82 (18) C15—N2—C22 115.70 (19)
N3—C3—N4 110.06 (18) N12—C13—C18 121.8 (2)
N3—C3—C2 124.49 (18) N12—C13—H13 119.1
N4—C3—C2 125.44 (18) C18—C13—H13 119.1
C8—N8—N9 110.45 (17) C16—C14—C10 119.3 (2)
C8—N8—H34 129.9 (14) C16—C14—H14 120.4
N9—N8—H34 119.3 (14) C10—C14—H14 120.4
N9—C4—N7 115.03 (18) N2—C15—C23 122.0 (2)
N9—C4—C1 120.37 (18) N2—C15—H15 119.0
N7—C4—C1 124.60 (17) C23—C15—H15 119.0
C1—N13—C18 115.89 (18) C14—C16—C7 119.3 (2)
C19—N12—C13 116.37 (19) C14—C16—H16 120.3
N6—C7—C16 122.38 (19) C7—C16—H16 120.3
N6—C7—C9 118.00 (18) N2—C22—C2 122.5 (2)
C16—C7—C9 119.62 (18) N2—C22—H22 118.7
N7—C8—N8 109.88 (18) C2—C22—H22 118.7

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N8—H34···N12i 0.96 (2) 1.92 (2) 2.817 (3) 155 (2)
N4—H35···N13ii 0.92 (2) 2.21 (2) 3.113 (3) 167 (2)

Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) x, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG5216).

References

  1. Browne, E. J. (1975). Aust. J. Chem. 28, 2543–2546.
  2. Bruker (2001). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2003). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Fischer, G. (2007). Adv. Heterocycl. Chem. 95, 143–219.
  5. Klingele, H. M. & Brooker, S. (2004). Eur. J. Org. Chem. pp, 3422–3434.
  6. Ouellette, W., Hudson, B. S. & Zubieta, J. (2007). Inorg. Chem. 46, 4887–4904. [DOI] [PubMed]
  7. Sheldrick, G. M. (2003). SADABS University of Göttingen, Germany.
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  9. Xu, Z., Zhao, X. & Wang, Q. (2011). Acta Cryst. E67, o2037. [DOI] [PMC free article] [PubMed]
  10. Zhang, C.-H., Zhang, J.-J., Li, W. & Liu, B.-H. (2010). Z. Kristallogr. New Cryst. Struct. 225, 599–600.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811034520/ng5216sup1.cif

e-67-o2457-sup1.cif (17.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034520/ng5216Isup2.hkl

e-67-o2457-Isup2.hkl (157.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811034520/ng5216Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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