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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 11;67(Pt 9):m1227–m1228. doi: 10.1107/S1600536811031771

Bis{4-bromo-2-[(2-hy­droxy­eth­yl)imino­meth­yl]phenolato}nickel(II) monohydrate

Chen-Yi Wang a,*, Jing-Fen Li a, Ping Wang b, Cai-Jun Yuan a
PMCID: PMC3200792  PMID: 22058854

Abstract

The title mononuclear nickel complex, [Ni(C9H9BrNO2)2]·H2O, was obtained by the reaction of 5-bromo­salicyl­aldehyde, 2-amino­ethanol and nickel nitrate in methanol. The NiII atom is six-coordinated by two phenolate O, two imine N and two hy­droxy O atoms from two crystallographically different Schiff base ligands, forming an octa­hedral geometry. In the crystal, mol­ecules are linked by inter­molecular O—H⋯O and O—H⋯Br hydrogen bonds, forming a three-dimensional network.

Related literature

For urease inhibitors, see: Wang (2009); Wang & Ye (2011). For related nickel(II) complexes, see: Arıcı et al. (2005); Liu et al. (2006); Li & Wang (2007); Ali et al. (2006).graphic file with name e-67-m1227-scheme1.jpg

Experimental

Crystal data

  • [Ni(C9H9BrNO2)2]·H2O

  • M r = 562.89

  • Orthorhombic, Inline graphic

  • a = 9.835 (3) Å

  • b = 12.851 (2) Å

  • c = 16.226 (3) Å

  • V = 2050.8 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 4.87 mm−1

  • T = 298 K

  • 0.21 × 0.20 × 0.20 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.428, T max = 0.442

  • 13318 measured reflections

  • 4474 independent reflections

  • 2310 reflections with I > 2σ(I)

  • R int = 0.099

Refinement

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.128

  • S = 1.02

  • 4474 reflections

  • 259 parameters

  • 3 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.60 e Å−3

  • Δρmin = −0.95 e Å−3

  • Absolute structure: Flack (1983), 1930 Friedel pairs

  • Flack parameter: 0.013 (19)

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031771/ci5196sup1.cif

e-67-m1227-sup1.cif (19KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031771/ci5196Isup2.hkl

e-67-m1227-Isup2.hkl (219.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Ni1—N1 1.976 (7)
Ni1—N2 1.981 (7)
Ni1—O1 2.008 (6)
Ni1—O3 2.014 (6)
Ni1—O2 2.132 (5)
Ni1—O4 2.160 (6)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H5B⋯O1 0.85 (1) 2.22 (7) 2.898 (8) 136 (8)
O5—H5A⋯Br2i 0.85 (1) 2.92 (5) 3.666 (9) 146 (8)
O4—H4A⋯Br1ii 0.93 2.90 3.532 (6) 126
O4—H4A⋯O5i 0.93 2.16 2.841 (9) 130
O2—H2A⋯O3iii 0.93 1.97 2.694 (7) 133

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

This work was supported financially by the Natural Science Foundation of China (No. 31071856), the Natural Science Foundation of Zhejiang Province (No. Y407318) and the Applied Research Project on Nonprofit Technology of Zhejiang Province (No. 2010 C32060).

supplementary crystallographic information

Comment

As part of our investigations into novel urease inhibitors (Wang & Ye, 2011; Wang, 2009), we have synthesized the title compound, a new mononuclear nickel(II) complex, Fig. 1. The compound contains a mononuclear nickel(II) complex molecule and a water molecule of crystallization. The Ni atom in the complex is six-coordinated by two phenolate O, two imine N, and two hydroxy O atoms from two Schiff base ligands, forming an octahedral geometry. The trans angles at the Ni atom are in the range 173.1 (3)–174.0 (2)°; the other angles are close to 90°, ranging from 80.4 (3) to 94.8 (2)°, indicating a slightly distorted octahedral coordination. The Ni—O and Ni—N bond lengths (Table 1) are typical and are comparable to those observed in other similar nickel(II) complexes (Arıcı et al., 2005; Liu et al., 2006; Li & Wang, 2007; Ali et al., 2006).

In the crystal structure of the compound, molecules are linked through intermolecular O—H···O and O—H···Br hydrogen bonds (Table 2), to form a three-dimensional network (Fig. 2).

Experimental

5-Bromosalicylaldehyde (1.0 mmol, 0.201 g), 2-aminoethanol (1.0 mmol, 0.061 g), and nickel nitrate hexahydrate (0.5 mmol, 0.146 g) were dissolved in MeOH (30 ml). The mixture was stirred at room temperature for 10 min to give a clear green solution. After keeping the solution in air for a week, green block-shaped crystals were formed at the bottom of the vessel.

Refinement

The water H atoms were located in a difference Fourier map and refined isotropically, with O–H and H···H distances restrained to 0.85 (1) and 1.37 (2) Å, respectively. The remaining H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C–H distances in the range 0.93–0.97 Å, O—H distance of 0.93 Å, and with Uiso(H) set at 1.2Ueq(C and O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. The dashed line indicates a hydrogen bond.

Fig. 2.

Fig. 2.

The crystal packing of the title compound. Hydrogen bonds are shown as dashed lines.

Crystal data

[Ni(C9H9BrNO2)2]·H2O F(000) = 1120
Mr = 562.89 Dx = 1.823 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 2063 reflections
a = 9.835 (3) Å θ = 2.5–25.3°
b = 12.851 (2) Å µ = 4.87 mm1
c = 16.226 (3) Å T = 298 K
V = 2050.8 (8) Å3 BlocK, green
Z = 4 0.21 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer 4474 independent reflections
Radiation source: fine-focus sealed tube 2310 reflections with I > 2σ(I)
graphite Rint = 0.099
ω scans θmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −12→12
Tmin = 0.428, Tmax = 0.442 k = −16→16
13318 measured reflections l = −20→15

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.128 w = 1/[σ2(Fo2) + (0.0374P)2 + 1.9512P] where P = (Fo2 + 2Fc2)/3
S = 1.02 (Δ/σ)max = 0.001
4474 reflections Δρmax = 0.60 e Å3
259 parameters Δρmin = −0.95 e Å3
3 restraints Absolute structure: Flack (1983), 1930 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.013 (19)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 1.08191 (9) −0.02277 (7) 0.25079 (7) 0.0550 (3)
Br2 0.5363 (2) 0.81053 (8) 0.47258 (10) 0.1150 (7)
Ni1 0.45998 (10) 0.24321 (8) 0.40117 (7) 0.0323 (3)
O1 0.6019 (5) 0.2555 (4) 0.3127 (4) 0.0425 (15)
O2 0.3198 (5) 0.2157 (4) 0.4990 (3) 0.0364 (16)
H2A 0.2280 0.2329 0.4989 0.044*
O3 0.5614 (6) 0.3443 (4) 0.4733 (4) 0.0366 (15)
O4 0.3367 (6) 0.1508 (4) 0.3188 (4) 0.0451 (17)
H4A 0.3131 0.0812 0.3251 0.054*
O5 0.5810 (10) 0.4431 (5) 0.2144 (5) 0.074 (2)
N1 0.5494 (7) 0.1225 (5) 0.4536 (4) 0.0307 (17)
N2 0.3496 (7) 0.3550 (5) 0.3502 (5) 0.0371 (19)
C1 0.7389 (8) 0.1086 (6) 0.3572 (5) 0.029 (2)
C2 0.7047 (8) 0.1925 (6) 0.3039 (5) 0.032 (2)
C3 0.7945 (8) 0.2085 (6) 0.2369 (6) 0.040 (2)
H3 0.7772 0.2640 0.2016 0.048*
C4 0.9041 (9) 0.1480 (7) 0.2209 (6) 0.042 (2)
H4 0.9582 0.1617 0.1752 0.051*
C5 0.9358 (9) 0.0658 (7) 0.2726 (6) 0.042 (2)
C6 0.8539 (8) 0.0483 (6) 0.3384 (6) 0.038 (2)
H6 0.8751 −0.0070 0.3732 0.046*
C7 0.6629 (8) 0.0814 (6) 0.4292 (5) 0.028 (2)
H7 0.6986 0.0286 0.4620 0.033*
C8 0.4827 (8) 0.0827 (6) 0.5276 (5) 0.040 (2)
H8A 0.5507 0.0620 0.5676 0.047*
H8B 0.4287 0.0220 0.5138 0.047*
C9 0.3914 (9) 0.1664 (7) 0.5646 (6) 0.045 (3)
H9A 0.3276 0.1353 0.6030 0.054*
H9B 0.4458 0.2171 0.5941 0.054*
C10 0.4558 (9) 0.5003 (6) 0.4176 (5) 0.041 (2)
C11 0.5478 (8) 0.4458 (6) 0.4704 (5) 0.033 (2)
C12 0.6275 (8) 0.5055 (6) 0.5233 (6) 0.045 (2)
H12 0.6845 0.4714 0.5602 0.055*
C13 0.6258 (10) 0.6126 (7) 0.5234 (6) 0.051 (3)
H13 0.6819 0.6502 0.5586 0.061*
C14 0.5408 (13) 0.6614 (7) 0.4712 (7) 0.060 (3)
C15 0.4569 (12) 0.6097 (7) 0.4200 (7) 0.062 (3)
H15 0.3987 0.6469 0.3857 0.075*
C16 0.3650 (8) 0.4525 (6) 0.3608 (6) 0.041 (2)
H16 0.3121 0.4964 0.3285 0.049*
C17 0.2488 (9) 0.3159 (7) 0.2904 (6) 0.051 (3)
H17A 0.2340 0.3675 0.2477 0.061*
H17B 0.1628 0.3033 0.3180 0.061*
C18 0.2992 (9) 0.2178 (6) 0.2530 (7) 0.051 (3)
H18A 0.2286 0.1858 0.2198 0.062*
H18B 0.3771 0.2316 0.2180 0.062*
H5A 0.584 (12) 0.395 (5) 0.178 (4) 0.080*
H5B 0.605 (11) 0.415 (6) 0.260 (3) 0.080*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.0343 (4) 0.0641 (6) 0.0666 (7) 0.0118 (5) 0.0052 (6) −0.0190 (6)
Br2 0.2030 (18) 0.0286 (5) 0.1133 (12) 0.0049 (9) −0.0640 (13) −0.0095 (7)
Ni1 0.0245 (5) 0.0278 (5) 0.0446 (7) 0.0024 (5) 0.0003 (5) 0.0031 (5)
O1 0.032 (3) 0.036 (3) 0.059 (4) 0.013 (3) 0.003 (3) 0.011 (3)
O2 0.026 (3) 0.038 (4) 0.045 (4) 0.015 (3) −0.003 (3) 0.004 (3)
O3 0.030 (4) 0.032 (3) 0.048 (4) 0.001 (3) −0.006 (3) 0.009 (3)
O4 0.051 (4) 0.035 (3) 0.050 (5) −0.003 (3) −0.012 (4) 0.001 (3)
O5 0.076 (5) 0.062 (4) 0.083 (6) −0.010 (5) 0.002 (5) 0.017 (4)
N1 0.031 (4) 0.025 (3) 0.036 (5) −0.005 (3) 0.008 (4) 0.000 (3)
N2 0.027 (4) 0.034 (4) 0.050 (5) −0.005 (3) −0.002 (4) −0.005 (4)
C1 0.026 (5) 0.031 (5) 0.029 (6) 0.008 (4) 0.001 (4) −0.012 (4)
C2 0.030 (5) 0.024 (4) 0.041 (6) 0.000 (4) −0.006 (5) −0.002 (4)
C3 0.043 (5) 0.034 (5) 0.044 (7) −0.002 (4) 0.000 (5) 0.004 (5)
C4 0.029 (5) 0.060 (6) 0.037 (6) −0.011 (5) 0.013 (4) −0.006 (5)
C5 0.034 (5) 0.045 (5) 0.046 (7) −0.007 (4) 0.001 (5) −0.022 (5)
C6 0.027 (5) 0.033 (5) 0.055 (7) 0.006 (4) 0.007 (5) −0.012 (5)
C7 0.026 (5) 0.019 (4) 0.038 (6) 0.007 (3) −0.005 (4) −0.006 (4)
C8 0.036 (5) 0.043 (5) 0.039 (6) 0.001 (4) 0.002 (5) 0.012 (5)
C9 0.031 (5) 0.058 (6) 0.045 (7) 0.013 (4) 0.007 (5) −0.008 (5)
C10 0.043 (5) 0.034 (4) 0.048 (6) 0.004 (4) −0.008 (5) 0.000 (4)
C11 0.027 (5) 0.035 (5) 0.036 (6) −0.001 (4) −0.008 (5) 0.001 (4)
C12 0.046 (6) 0.038 (5) 0.052 (7) 0.007 (4) −0.009 (5) −0.001 (5)
C13 0.057 (7) 0.037 (5) 0.059 (8) −0.001 (5) −0.009 (6) −0.016 (5)
C14 0.080 (8) 0.031 (5) 0.067 (8) −0.001 (6) −0.008 (8) 0.001 (5)
C15 0.077 (7) 0.037 (5) 0.073 (8) 0.013 (6) −0.018 (7) −0.004 (5)
C16 0.036 (5) 0.029 (5) 0.057 (7) 0.004 (4) −0.018 (5) 0.002 (5)
C17 0.040 (6) 0.040 (5) 0.072 (8) 0.012 (5) −0.008 (5) 0.011 (5)
C18 0.048 (5) 0.053 (6) 0.053 (7) −0.002 (4) −0.020 (6) 0.000 (6)

Geometric parameters (Å, °)

Ni1—N1 1.976 (7) C4—C5 1.385 (12)
Ni1—N2 1.981 (7) C4—H4 0.93
Ni1—O1 2.008 (6) C5—C6 1.356 (11)
Ni1—O3 2.014 (6) C6—H6 0.93
Ni1—O2 2.132 (5) C7—H7 0.93
Ni1—O4 2.160 (6) C8—C9 1.523 (11)
Br1—C5 1.867 (9) C8—H8A 0.97
Br2—C14 1.917 (8) C8—H8B 0.97
O1—C2 1.303 (9) C9—H9A 0.97
O2—C9 1.424 (10) C9—H9B 0.97
O2—H2A 0.9298 C10—C15 1.407 (12)
O3—C11 1.312 (8) C10—C16 1.423 (11)
O4—C18 1.420 (10) C10—C11 1.430 (11)
O4—H4A 0.9298 C11—C12 1.392 (11)
O5—H5A 0.853 (10) C12—C13 1.377 (11)
O5—H5B 0.854 (10) C12—H12 0.93
N1—C7 1.297 (10) C13—C14 1.346 (13)
N1—C8 1.461 (10) C13—H13 0.93
N2—C16 1.274 (10) C14—C15 1.346 (14)
N2—C17 1.476 (11) C15—H15 0.93
C1—C6 1.405 (10) C16—H16 0.93
C1—C2 1.422 (11) C17—C18 1.485 (12)
C1—C7 1.431 (11) C17—H17A 0.97
C2—C3 1.416 (12) C17—H17B 0.97
C3—C4 1.354 (11) C18—H18A 0.97
C3—H3 0.93 C18—H18B 0.97
N1—Ni1—N2 173.1 (3) N1—C7—C1 126.8 (8)
N1—Ni1—O1 93.4 (2) N1—C7—H7 116.6
N2—Ni1—O1 91.5 (3) C1—C7—H7 116.6
N1—Ni1—O3 92.1 (2) N1—C8—C9 110.0 (7)
N2—Ni1—O3 92.6 (2) N1—C8—H8A 109.7
O1—Ni1—O3 91.2 (2) C9—C8—H8A 109.7
N1—Ni1—O2 80.6 (2) N1—C8—H8B 109.7
N2—Ni1—O2 94.4 (3) C9—C8—H8B 109.7
O1—Ni1—O2 174.0 (2) H8A—C8—H8B 108.2
O3—Ni1—O2 89.7 (2) O2—C9—C8 108.1 (7)
N1—Ni1—O4 94.8 (2) O2—C9—H9A 110.1
N2—Ni1—O4 80.4 (3) C8—C9—H9A 110.1
O1—Ni1—O4 89.5 (2) O2—C9—H9B 110.1
O3—Ni1—O4 173.0 (2) C8—C9—H9B 110.1
O2—Ni1—O4 90.4 (2) H9A—C9—H9B 108.4
C2—O1—Ni1 124.7 (5) C15—C10—C16 117.0 (8)
C9—O2—Ni1 108.1 (5) C15—C10—C11 117.9 (8)
C9—O2—H2A 126.0 C16—C10—C11 125.0 (7)
Ni1—O2—H2A 125.9 O3—C11—C12 117.9 (7)
C11—O3—Ni1 124.8 (5) O3—C11—C10 125.0 (7)
C18—O4—Ni1 106.1 (5) C12—C11—C10 117.1 (7)
C18—O4—H4A 126.9 C13—C12—C11 123.0 (8)
Ni1—O4—H4A 126.9 C13—C12—H12 118.5
H5A—O5—H5B 106 (3) C11—C12—H12 118.5
C7—N1—C8 119.7 (7) C14—C13—C12 118.2 (9)
C7—N1—Ni1 124.9 (6) C14—C13—H13 120.9
C8—N1—Ni1 115.4 (5) C12—C13—H13 120.9
C16—N2—C17 120.2 (8) C13—C14—C15 122.6 (9)
C16—N2—Ni1 126.3 (6) C13—C14—Br2 118.3 (8)
C17—N2—Ni1 113.3 (5) C15—C14—Br2 119.1 (8)
C6—C1—C2 118.5 (8) C14—C15—C10 121.0 (9)
C6—C1—C7 117.5 (8) C14—C15—H15 119.5
C2—C1—C7 123.9 (7) C10—C15—H15 119.5
O1—C2—C3 118.5 (7) N2—C16—C10 125.9 (8)
O1—C2—C1 126.0 (8) N2—C16—H16 117.0
C3—C2—C1 115.4 (7) C10—C16—H16 117.0
C4—C3—C2 124.0 (8) N2—C17—C18 109.5 (7)
C4—C3—H3 118.0 N2—C17—H17A 109.8
C2—C3—H3 118.0 C18—C17—H17A 109.8
C3—C4—C5 120.1 (9) N2—C17—H17B 109.8
C3—C4—H4 119.9 C18—C17—H17B 109.8
C5—C4—H4 119.9 H17A—C17—H17B 108.2
C6—C5—C4 118.0 (8) O4—C18—C17 107.1 (8)
C6—C5—Br1 120.3 (7) O4—C18—H18A 110.3
C4—C5—Br1 121.6 (7) C17—C18—H18A 110.3
C5—C6—C1 123.8 (9) O4—C18—H18B 110.3
C5—C6—H6 118.1 C17—C18—H18B 110.3
C1—C6—H6 118.1 H18A—C18—H18B 108.6

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O5—H5B···O1 0.85 (1) 2.22 (7) 2.898 (8) 136 (8)
O5—H5A···Br2i 0.85 (1) 2.92 (5) 3.666 (9) 146 (8)
O4—H4A···Br1ii 0.93 2.90 3.532 (6) 126
O4—H4A···O5i 0.93 2.16 2.841 (9) 130
O2—H2A···O3iii 0.93 1.97 2.694 (7) 133

Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x−1, y, z; (iii) x−1/2, −y+1/2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CI5196).

References

  1. Ali, H. M., Puvaneswary, S. & Ng, S. W. (2006). Acta Cryst. E62, m2741–m2742.
  2. Arıcı, C., Yüzer, D., Atakol, O., Fuess, H. & Svoboda, I. (2005). Acta Cryst. E61, m919–m921.
  3. Bruker (1998). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  5. Li, L.-Z. & Wang, L.-H. (2007). Acta Cryst. E63, m749–m750.
  6. Liu, X.-H., Cai, J.-H., Jiang, Y.-M., Huang, Y.-H. & Yin, X.-J. (2006). Acta Cryst. E62, m2119–m2121.
  7. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
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  10. Wang, C. Y. & Ye, J. Y. (2011). Russ. J. Coord. Chem. 37, 235–241.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031771/ci5196sup1.cif

e-67-m1227-sup1.cif (19KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031771/ci5196Isup2.hkl

e-67-m1227-Isup2.hkl (219.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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