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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 11;67(Pt 9):m1229. doi: 10.1107/S1600536811031680

Bis{4-chloro-2-[(2-hy­droxy­eth­yl)imino­meth­yl]phenolato}nickel(II) monohydrate

Chen-Yi Wang a,*, Jin-Yun Ye a, Xiang Wu a, Zhi-Ping Han a
PMCID: PMC3200802  PMID: 22058855

Abstract

The title mononuclear nickel(II) complex, [Ni(C9H9ClNO2)2]·H2O, was obtained by the reaction of 5-chloro­salicyl­aldehyde, 2-amino­ethanol and nickel nitrate in methanol. The Ni atom is six-coordinated by two phenolate O, two imine N and two hy­droxy O atoms from two crystallographically different Schiff base ligands, forming an octa­hedral geometry. In the crystal, mol­ecules are linked through inter­molecular O—H⋯O and O—H⋯Cl hydrogen bonds.

Related literature

For our investigations of urease inhibitors, see: Wang (2009); Wang & Ye (2011). For similar nickel(II) complexes, see: Arıcı et al. (2005); Liu et al. (2006); Li & Wang (2007); Ali et al. (2006).graphic file with name e-67-m1229-scheme1.jpg

Experimental

Crystal data

  • [Ni(C9H9ClNO2)2]·H2O

  • M r = 473.97

  • Orthorhombic, Inline graphic

  • a = 9.846 (1) Å

  • b = 12.646 (2) Å

  • c = 16.006 (2) Å

  • V = 1992.9 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.27 mm−1

  • T = 298 K

  • 0.30 × 0.27 × 0.27 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.701, T max = 0.725

  • 11691 measured reflections

  • 4328 independent reflections

  • 3147 reflections with I > 2σ(I)

  • R int = 0.048

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.076

  • S = 1.04

  • 4328 reflections

  • 265 parameters

  • 5 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.35 e Å−3

  • Δρmin = −0.39 e Å−3

  • Absolute structure: Flack (1983), 1855 Friedel pairs

  • Flack parameter: 0.015 (15)

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031680/om2456sup1.cif

e-67-m1229-sup1.cif (19.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031680/om2456Isup2.hkl

e-67-m1229-Isup2.hkl (212.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Ni1—N2 1.996 (3)
Ni1—N1 2.000 (3)
Ni1—O3 2.011 (2)
Ni1—O1 2.015 (2)
Ni1—O2 2.131 (2)
Ni1—O4 2.160 (3)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H5B⋯O1i 0.86 (1) 2.00 (2) 2.846 (4) 167 (4)
O4—H4⋯O5ii 0.85 (1) 1.97 (2) 2.798 (4) 165 (4)
O2—H2⋯O3iii 0.85 (1) 1.87 (2) 2.699 (3) 165 (4)
O5—H5A⋯Cl2 0.84 (1) 2.73 (2) 3.542 (4) 163 (4)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

This work was supported financially by the Natural Science Foundation of China (No. 31071856), the Natural Science Foundation of Zhejiang Province (No. Y407318) and the Applied Research Project on Nonprofit Technology of Zhejiang Province (No. 2010 C32060).

supplementary crystallographic information

Comment

As part of our investigations into novel urease inhibitors (Wang & Ye, 2011; Wang, 2009), we have synthesized the title compound, a new mononuclear nickel(II) complex, Fig. 1. The compound contains a mononuclear nickel(II) complex molecule and a water molecule of crystallization. The Ni atom in the complex is six-coordinated by two phenolate O, two imine N, and two hydroxy O atoms from two Schiff base ligands, forming an octahedral geometry. The trans angles at the Ni atom are in the range 172.5 (1)–174.1 (1)°; the other angles are close to 90°, ranging from 80.1 (1) to 94.9 (1)°, indicating a slightly distorted octahedral coordination. The Ni–O and Ni–N bond lengths (Table 1) are typical and are comparable with those observed in other similar nickel(II) complexes (Arıcı et al., 2005; Liu et al., 2006; Li & Wang, 2007; Ali et al., 2006).

In the crystal structure of the compound, molecules are linked through intermolecular O—H···O and O—H···Cl hydrogen bonds (Table 2), to form a three-dimensional network (Fig. 2).

Experimental

5-Chlorosalicylaldehyde (1.0 mmol, 0.157 g), 2-aminoethanol (1.0 mmol, 0.061 g), and nickel nitrate hexahydrate (0.5 mmol, 0.146 g) were dissolved in MeOH (30 ml). The mixture was stirred at room temperature for 10 min to give a clear green solution. After keeping the solution in air for a week, green block-shaped crystals were formed at the bottom of the vessel.

Refinement

The water and hydroxy H atoms were located from a difference Fourier map and refined isotropically, with O—H and H···H distances restrained to 0.85 (1) and 1.37 (2) Å, respectively. Their isotropic displacement parameters were fixed at 0.08 Å2). The remaining H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C—H distances in the range 0.93–0.97 Å, and with Uiso(H) set at 1.2Ueq(C and O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

The molecular packing of the title compound, viewed along the a axis. Intermolecular hydrogen bonds are shown as dashed lines.

Crystal data

[Ni(C9H9ClNO2)2]·H2O Dx = 1.580 Mg m3
Mr = 473.97 Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121 Cell parameters from 2792 reflections
a = 9.846 (1) Å θ = 2.4–24.5°
b = 12.646 (2) Å µ = 1.27 mm1
c = 16.006 (2) Å T = 298 K
V = 1992.9 (4) Å3 Block, green
Z = 4 0.30 × 0.27 × 0.27 mm
F(000) = 976

Data collection

Bruker SMART CCD area-detector diffractometer 4328 independent reflections
Radiation source: fine-focus sealed tube 3147 reflections with I > 2σ(I)
graphite Rint = 0.048
ω scans θmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −12→12
Tmin = 0.701, Tmax = 0.725 k = −14→16
11691 measured reflections l = −20→14

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.076 w = 1/[σ2(Fo2) + (0.0206P)2 + 0.1322P] where P = (Fo2 + 2Fc2)/3
S = 1.04 (Δ/σ)max < 0.001
4328 reflections Δρmax = 0.35 e Å3
265 parameters Δρmin = −0.39 e Å3
5 restraints Absolute structure: Flack (1983), 1855 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.015 (15)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Ni1 0.53364 (4) 0.24034 (3) 0.09823 (3) 0.03031 (12)
Cl1 −0.07950 (10) −0.02347 (9) 0.24602 (7) 0.0569 (3)
Cl2 0.4617 (2) 0.80769 (9) 0.02875 (10) 0.1053 (6)
N1 0.4422 (3) 0.1170 (2) 0.04386 (17) 0.0293 (7)
N2 0.6463 (3) 0.3534 (2) 0.15079 (19) 0.0331 (7)
O1 0.3912 (2) 0.2511 (2) 0.18821 (14) 0.0396 (6)
O2 0.6727 (2) 0.21542 (19) −0.00183 (15) 0.0351 (6)
H2 0.7545 (17) 0.195 (3) 0.000 (3) 0.080*
O3 0.4326 (2) 0.34479 (18) 0.02676 (15) 0.0353 (6)
O4 0.6595 (3) 0.1451 (2) 0.17926 (17) 0.0427 (7)
H4 0.634 (4) 0.0850 (18) 0.198 (3) 0.080*
O5 0.5861 (4) 0.9351 (2) 0.2104 (2) 0.0666 (9)
H5A 0.575 (5) 0.905 (3) 0.1640 (12) 0.080*
H5B 0.601 (4) 0.886 (2) 0.2461 (17) 0.080*
C1 0.2544 (3) 0.1029 (3) 0.1421 (2) 0.0285 (8)
C2 0.2870 (3) 0.1881 (3) 0.1969 (2) 0.0312 (9)
C3 0.1979 (3) 0.2045 (3) 0.2648 (2) 0.0369 (9)
H3 0.2154 0.2602 0.3012 0.044*
C4 0.0863 (4) 0.1416 (3) 0.2794 (2) 0.0385 (9)
H4A 0.0302 0.1547 0.3250 0.046*
C5 0.0581 (3) 0.0591 (3) 0.2259 (2) 0.0377 (10)
C6 0.1391 (3) 0.0405 (3) 0.1584 (2) 0.0353 (9)
H6 0.1177 −0.0147 0.1223 0.042*
C7 0.3306 (3) 0.0749 (3) 0.0684 (2) 0.0317 (9)
H7 0.2953 0.0210 0.0354 0.038*
C8 0.5114 (3) 0.0774 (3) −0.0304 (2) 0.0376 (9)
H8A 0.4449 0.0547 −0.0714 0.045*
H8B 0.5671 0.0170 −0.0157 0.045*
C9 0.6000 (4) 0.1642 (3) −0.0674 (2) 0.0409 (10)
H9A 0.6634 0.1339 −0.1071 0.049*
H9B 0.5438 0.2152 −0.0966 0.049*
C10 0.5384 (4) 0.5021 (3) 0.0821 (2) 0.0361 (9)
C11 0.4462 (3) 0.4476 (3) 0.0297 (2) 0.0322 (9)
C12 0.3640 (4) 0.5102 (3) −0.0228 (2) 0.0398 (10)
H12 0.3043 0.4765 −0.0592 0.048*
C13 0.3680 (4) 0.6183 (3) −0.0226 (3) 0.0486 (11)
H13 0.3114 0.6569 −0.0578 0.058*
C14 0.4562 (6) 0.6693 (3) 0.0297 (3) 0.0550 (12)
C15 0.5406 (4) 0.6136 (3) 0.0800 (2) 0.0512 (11)
H15 0.6014 0.6498 0.1141 0.061*
C16 0.6327 (4) 0.4522 (3) 0.1399 (2) 0.0395 (10)
H16 0.6877 0.4966 0.1715 0.047*
C17 0.7482 (4) 0.3129 (3) 0.2095 (3) 0.0476 (12)
H17A 0.7642 0.3645 0.2532 0.057*
H17B 0.8331 0.3006 0.1804 0.057*
C18 0.6985 (4) 0.2117 (3) 0.2472 (3) 0.0497 (11)
H18A 0.7699 0.1785 0.2797 0.060*
H18B 0.6215 0.2250 0.2835 0.060*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Ni1 0.02362 (18) 0.0263 (2) 0.0410 (3) −0.0021 (2) −0.0013 (2) −0.0026 (2)
Cl1 0.0378 (6) 0.0680 (7) 0.0648 (8) −0.0153 (5) 0.0081 (6) 0.0168 (6)
Cl2 0.1734 (16) 0.0291 (6) 0.1135 (12) −0.0054 (9) −0.0607 (13) 0.0109 (6)
N1 0.0269 (17) 0.0244 (15) 0.0367 (18) 0.0013 (13) 0.0017 (14) −0.0003 (14)
N2 0.0255 (16) 0.0317 (18) 0.042 (2) −0.0035 (14) −0.0052 (14) 0.0019 (15)
O1 0.0363 (12) 0.0363 (14) 0.0463 (15) −0.0070 (13) 0.0054 (11) −0.0114 (15)
O2 0.0233 (11) 0.0422 (16) 0.0398 (15) −0.0034 (11) 0.0018 (12) −0.0067 (12)
O3 0.0255 (14) 0.0290 (13) 0.0513 (17) −0.0018 (11) −0.0073 (12) −0.0043 (12)
O4 0.0506 (18) 0.0326 (15) 0.0449 (18) −0.0009 (14) −0.0107 (15) 0.0006 (14)
O5 0.079 (2) 0.0501 (19) 0.071 (2) −0.0112 (18) −0.004 (2) 0.0169 (16)
C1 0.0223 (17) 0.028 (2) 0.035 (2) −0.0022 (15) −0.0032 (16) 0.0050 (16)
C2 0.0274 (19) 0.030 (2) 0.036 (2) −0.0001 (16) −0.0022 (17) 0.0039 (17)
C3 0.0323 (19) 0.038 (2) 0.041 (3) 0.0041 (16) −0.0019 (18) −0.0024 (18)
C4 0.0312 (19) 0.049 (2) 0.035 (2) 0.0061 (19) 0.0062 (17) 0.008 (2)
C5 0.024 (2) 0.042 (2) 0.047 (3) −0.0032 (17) −0.0015 (18) 0.0138 (19)
C6 0.0302 (19) 0.038 (2) 0.037 (2) −0.0020 (17) −0.0038 (18) 0.0033 (19)
C7 0.0293 (19) 0.0265 (19) 0.039 (2) −0.0040 (16) −0.0037 (17) 0.0002 (16)
C8 0.033 (2) 0.041 (2) 0.039 (2) −0.0057 (17) 0.0062 (17) −0.0090 (17)
C9 0.036 (2) 0.047 (2) 0.039 (2) −0.0118 (18) 0.0011 (18) −0.0060 (19)
C10 0.0386 (19) 0.0278 (18) 0.042 (2) −0.0028 (18) −0.003 (2) 0.0008 (16)
C11 0.026 (2) 0.032 (2) 0.039 (2) −0.0033 (16) 0.0021 (17) −0.0031 (17)
C12 0.036 (2) 0.037 (2) 0.046 (3) −0.0033 (18) −0.0059 (18) 0.003 (2)
C13 0.057 (3) 0.040 (2) 0.049 (3) 0.005 (2) −0.010 (2) 0.010 (2)
C14 0.086 (3) 0.026 (2) 0.053 (3) −0.003 (2) −0.006 (3) 0.0055 (19)
C15 0.068 (3) 0.033 (2) 0.053 (3) −0.009 (2) −0.016 (3) −0.0025 (19)
C16 0.034 (2) 0.031 (2) 0.054 (3) −0.0088 (17) −0.0082 (18) −0.0051 (19)
C17 0.039 (2) 0.043 (2) 0.060 (3) −0.006 (2) −0.021 (2) −0.005 (2)
C18 0.052 (2) 0.043 (3) 0.055 (3) 0.0039 (19) −0.019 (2) 0.002 (2)

Geometric parameters (Å, °)

Ni1—N2 1.996 (3) C4—C5 1.377 (5)
Ni1—N1 2.000 (3) C4—H4A 0.9300
Ni1—O3 2.011 (2) C5—C6 1.363 (5)
Ni1—O1 2.015 (2) C6—H6 0.9300
Ni1—O2 2.131 (2) C7—H7 0.9300
Ni1—O4 2.160 (3) C8—C9 1.522 (5)
Cl1—C5 1.741 (3) C8—H8A 0.9700
Cl2—C14 1.751 (4) C8—H8B 0.9700
N1—C7 1.283 (4) C9—H9A 0.9700
N1—C8 1.458 (4) C9—H9B 0.9700
N2—C16 1.269 (4) C10—C15 1.410 (5)
N2—C17 1.467 (4) C10—C11 1.415 (5)
O1—C2 1.307 (4) C10—C16 1.454 (5)
O2—C9 1.425 (4) C11—C12 1.410 (5)
O2—H2 0.847 (10) C12—C13 1.368 (5)
O3—C11 1.308 (4) C12—H12 0.9300
O4—C18 1.428 (4) C13—C14 1.367 (5)
O4—H4 0.852 (10) C13—H13 0.9300
O5—H5B 0.860 (10) C14—C15 1.355 (5)
O5—H5A 0.844 (10) C15—H15 0.9300
C1—C6 1.407 (4) C16—H16 0.9300
C1—C2 1.426 (5) C17—C18 1.497 (5)
C1—C7 1.442 (5) C17—H17A 0.9700
C2—C3 1.412 (5) C17—H17B 0.9700
C3—C4 1.377 (5) C18—H18A 0.9700
C3—H3 0.9300 C18—H18B 0.9700
N2—Ni1—N1 172.89 (12) N1—C7—C1 126.4 (3)
N2—Ni1—O3 92.54 (11) N1—C7—H7 116.8
N1—Ni1—O3 92.40 (10) C1—C7—H7 116.8
N2—Ni1—O1 92.13 (11) N1—C8—C9 109.7 (3)
N1—Ni1—O1 92.89 (10) N1—C8—H8A 109.7
O3—Ni1—O1 91.03 (10) C9—C8—H8A 109.7
N2—Ni1—O2 93.76 (11) N1—C8—H8B 109.7
N1—Ni1—O2 81.20 (10) C9—C8—H8B 109.7
O3—Ni1—O2 89.28 (10) H8A—C8—H8B 108.2
O1—Ni1—O2 174.08 (10) O2—C9—C8 109.2 (3)
N2—Ni1—O4 80.06 (11) O2—C9—H9A 109.8
N1—Ni1—O4 94.87 (11) C8—C9—H9A 109.8
O3—Ni1—O4 172.50 (10) O2—C9—H9B 109.8
O1—Ni1—O4 90.43 (10) C8—C9—H9B 109.8
O2—Ni1—O4 90.02 (10) H9A—C9—H9B 108.3
C7—N1—C8 120.4 (3) C15—C10—C11 118.9 (3)
C7—N1—Ni1 125.2 (3) C15—C10—C16 116.0 (3)
C8—N1—Ni1 114.3 (2) C11—C10—C16 125.1 (3)
C16—N2—C17 120.3 (3) O3—C11—C12 118.5 (3)
C16—N2—Ni1 126.0 (3) O3—C11—C10 124.8 (3)
C17—N2—Ni1 113.6 (2) C12—C11—C10 116.7 (3)
C2—O1—Ni1 125.6 (2) C13—C12—C11 122.9 (4)
C9—O2—Ni1 107.31 (19) C13—C12—H12 118.6
C9—O2—H2 111 (3) C11—C12—H12 118.6
Ni1—O2—H2 129 (3) C14—C13—C12 119.4 (4)
C11—O3—Ni1 125.6 (2) C14—C13—H13 120.3
C18—O4—Ni1 106.4 (2) C12—C13—H13 120.3
C18—O4—H4 110 (3) C15—C14—C13 120.6 (4)
Ni1—O4—H4 123 (3) C15—C14—Cl2 120.4 (4)
H5B—O5—H5A 106 (2) C13—C14—Cl2 119.0 (4)
C6—C1—C2 119.4 (3) C14—C15—C10 121.6 (4)
C6—C1—C7 115.7 (3) C14—C15—H15 119.2
C2—C1—C7 124.9 (3) C10—C15—H15 119.2
O1—C2—C3 118.7 (3) N2—C16—C10 125.6 (3)
O1—C2—C1 124.9 (3) N2—C16—H16 117.2
C3—C2—C1 116.4 (3) C10—C16—H16 117.2
C4—C3—C2 122.8 (3) N2—C17—C18 109.5 (3)
C4—C3—H3 118.6 N2—C17—H17A 109.8
C2—C3—H3 118.6 C18—C17—H17A 109.8
C3—C4—C5 119.5 (4) N2—C17—H17B 109.8
C3—C4—H4A 120.2 C18—C17—H17B 109.8
C5—C4—H4A 120.2 H17A—C17—H17B 108.2
C6—C5—C4 120.4 (3) O4—C18—C17 106.6 (3)
C6—C5—Cl1 119.9 (3) O4—C18—H18A 110.4
C4—C5—Cl1 119.8 (3) C17—C18—H18A 110.4
C5—C6—C1 121.5 (3) O4—C18—H18B 110.4
C5—C6—H6 119.3 C17—C18—H18B 110.4
C1—C6—H6 119.3 H18A—C18—H18B 108.6

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O5—H5B···O1i 0.86 (1) 2.00 (2) 2.846 (4) 167 (4)
O4—H4···O5ii 0.85 (1) 1.97 (2) 2.798 (4) 165 (4)
O2—H2···O3iii 0.85 (1) 1.87 (2) 2.699 (3) 165 (4)
O5—H5A···Cl2 0.84 (1) 2.73 (2) 3.542 (4) 163 (4)

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x, y−1, z; (iii) x+1/2, −y+1/2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: OM2456).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031680/om2456sup1.cif

e-67-m1229-sup1.cif (19.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031680/om2456Isup2.hkl

e-67-m1229-Isup2.hkl (212.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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