Abstract
The title compound, C13H12N2OS, was obtained from the condensation reaction of 2-acetylthiophene and benzohydrazide. In the molecule, the formohydrazide fragment is approximately planar (r.m.s deviation = 0.0146 Å) and the mean plane is oriented at dihedral angles of 24.47 (11) and 28.86 (13)°, respectively, to the phenyl and thiophene rings. The thiophene and phenyl rings make a dihedral angle of 53.21 (8)°. The benzamide fragment and thiophene ring are located on the opposite sides of the C=N bond, showing an E conformation. Classical intermolecular N—H⋯O hydrogen bonds and weak C—H⋯O interactions are present in the crystal structure: three such bonds occur to the same O-atom acceptor.
Related literature
For applications of hydrazone derivatives in the biological field, see: Okabe et al. (1993 ▶). For general background to this work, see: Qiang et al. (2007 ▶). For a related structures, see: Xia et al. (2009 ▶); Shan et al. (2011 ▶)
Experimental
Crystal data
C13H12N2OS
M r = 244.31
Orthorhombic,
a = 9.906 (3) Å
b = 10.542 (5) Å
c = 22.870 (5) Å
V = 2388.3 (14) Å3
Z = 8
Mo Kα radiation
μ = 0.26 mm−1
T = 294 K
0.32 × 0.29 × 0.28 mm
Data collection
Rigaku R-AXIS RAPID IP diffractometer
7859 measured reflections
2153 independent reflections
1552 reflections with I > 2σ(I)
R int = 0.036
Refinement
R[F 2 > 2σ(F 2)] = 0.041
wR(F 2) = 0.101
S = 1.03
2153 reflections
155 parameters
H-atom parameters constrained
Δρmax = 0.20 e Å−3
Δρmin = −0.17 e Å−3
Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033101/xu6116sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033101/xu6116Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811033101/xu6116Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O1i | 0.86 | 2.50 | 3.340 (3) | 166 |
| C2—H2⋯O1i | 0.93 | 2.43 | 3.251 (3) | 147 |
| C13—H13A⋯O1i | 0.96 | 2.40 | 3.246 (3) | 147 |
Symmetry code: (i)
.
Acknowledgments
The work was supported by the Natural Science Foundation of Zhejiang Province, China (No. M203027).
supplementary crystallographic information
Comment
The hydrazone derivatives has attracted our much attention because they have shown to be potential DNA damaging and mutagenic agents (Okabe et al., 1993). As part of the ongoing investigation on the relationship between structure and property of hydrazone derivatives (Qiang et al., 2007) the title compound has recently been prepared in our laboratory and its crystal structure is reported here.
The molecular structure of the title compound is shown in Fig. 1. In the molecule, the formohydrazide fragment is approximately co-planar [r.m.s deviation = 0.0146 Å] and the mean plane is oriented with respect to the phenyl ring and thiophene ring at 24.47 (11) and 28.86 (13)°, respectively. The N2—C8 bond length of 1.286 (2) Å shows a typical C═N double bond. The thiophene and benzamide units are located on the opposite sites of the C═N bond, showing an E configuration.
Intermolecular N—H···O and weak C—H···O hydrogen bonding is present in the crystal structure (Table 1).
Experimental
Benzohydrazide (0.68 g, 5 mmol) was dissolved in ethanol (25 ml), then acetic acid (0.2 ml) was added to the ethanol solution with stirring. The solution was heated at about 333 K for several minutes until it became clear. 2-Acetylthiophene (0.63 g, 5 mmol) was then added slowly into the solution, and the mixture solution was refluxed for 6 h. After cooling to room temperature, yellow microcrystals appeared. The microcrystals were separated from the solution and washed with cold water three times. Recrystallization was performed twice with absolute methanol to obtain single crystals of the title compound.
Refinement
H atoms were placed in calculated positions with C—H = 0.93 (aromatic), 0.96 Å (methyl) and N—H = 0.86 Å, and refined in riding mode with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C,N) for the others.
Figures
Fig. 1.
The molecular structure of the title compound with 40% probability displacement (arbitrary spheres for H atoms).
Crystal data
| C13H12N2OS | F(000) = 1024 |
| Mr = 244.31 | Dx = 1.359 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 2153 reflections |
| a = 9.906 (3) Å | θ = 3.3–25.2° |
| b = 10.542 (5) Å | µ = 0.26 mm−1 |
| c = 22.870 (5) Å | T = 294 K |
| V = 2388.3 (14) Å3 | Block, yellow |
| Z = 8 | 0.32 × 0.29 × 0.28 mm |
Data collection
| Rigaku R-AXIS RAPID IP diffractometer | 1552 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.036 |
| graphite | θmax = 25.2°, θmin = 3.3° |
| Detector resolution: 10.0 pixels mm-1 | h = −10→11 |
| ω scans | k = −11→12 |
| 7859 measured reflections | l = −27→23 |
| 2153 independent reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.101 | H-atom parameters constrained |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0465P)2 + 0.4798P] where P = (Fo2 + 2Fc2)/3 |
| 2153 reflections | (Δ/σ)max = 0.001 |
| 155 parameters | Δρmax = 0.20 e Å−3 |
| 0 restraints | Δρmin = −0.17 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.61206 (5) | 0.31374 (5) | 0.02223 (3) | 0.0507 (2) | |
| N1 | 0.30582 (15) | 0.50999 (16) | 0.12073 (8) | 0.0425 (5) | |
| H1 | 0.3095 | 0.5895 | 0.1290 | 0.051* | |
| N2 | 0.41317 (15) | 0.45043 (16) | 0.09296 (8) | 0.0422 (4) | |
| O1 | 0.19122 (15) | 0.32660 (14) | 0.12656 (9) | 0.0679 (5) | |
| C1 | 0.08229 (18) | 0.51074 (18) | 0.16290 (10) | 0.0376 (5) | |
| C2 | 0.0570 (2) | 0.6393 (2) | 0.15591 (10) | 0.0462 (6) | |
| H2 | 0.1126 | 0.6881 | 0.1321 | 0.055* | |
| C3 | −0.0508 (2) | 0.6949 (2) | 0.18432 (11) | 0.0549 (6) | |
| H3 | −0.0675 | 0.7810 | 0.1794 | 0.066* | |
| C4 | −0.1335 (2) | 0.6245 (3) | 0.21977 (11) | 0.0583 (7) | |
| H4 | −0.2050 | 0.6629 | 0.2393 | 0.070* | |
| C5 | −0.1101 (2) | 0.4972 (2) | 0.22631 (12) | 0.0606 (7) | |
| H5 | −0.1664 | 0.4490 | 0.2501 | 0.073* | |
| C6 | −0.0040 (2) | 0.4405 (2) | 0.19801 (10) | 0.0495 (6) | |
| H6 | 0.0103 | 0.3538 | 0.2024 | 0.059* | |
| C7 | 0.19588 (19) | 0.4411 (2) | 0.13447 (10) | 0.0423 (5) | |
| C8 | 0.5283 (2) | 0.50629 (18) | 0.09602 (10) | 0.0377 (5) | |
| C9 | 0.63941 (18) | 0.44513 (18) | 0.06501 (9) | 0.0377 (5) | |
| C10 | 0.7727 (2) | 0.4768 (2) | 0.06465 (11) | 0.0488 (6) | |
| H10 | 0.8080 | 0.5451 | 0.0853 | 0.059* | |
| C11 | 0.8514 (2) | 0.3953 (2) | 0.02980 (11) | 0.0549 (7) | |
| H11 | 0.9441 | 0.4043 | 0.0249 | 0.066* | |
| C12 | 0.7782 (2) | 0.3029 (2) | 0.00428 (11) | 0.0509 (6) | |
| H12 | 0.8141 | 0.2409 | −0.0201 | 0.061* | |
| C13 | 0.5569 (2) | 0.6255 (2) | 0.12900 (11) | 0.0523 (6) | |
| H13A | 0.5023 | 0.6930 | 0.1137 | 0.078* | |
| H13B | 0.6506 | 0.6471 | 0.1249 | 0.078* | |
| H13C | 0.5362 | 0.6130 | 0.1696 | 0.078* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0387 (3) | 0.0543 (4) | 0.0590 (4) | −0.0030 (3) | −0.0008 (3) | −0.0143 (3) |
| N1 | 0.0321 (9) | 0.0425 (9) | 0.0529 (13) | 0.0001 (8) | 0.0042 (8) | −0.0043 (8) |
| N2 | 0.0328 (9) | 0.0455 (9) | 0.0484 (12) | 0.0030 (8) | 0.0026 (8) | −0.0031 (8) |
| O1 | 0.0465 (9) | 0.0458 (9) | 0.1112 (16) | −0.0032 (7) | 0.0204 (9) | −0.0110 (9) |
| C1 | 0.0319 (10) | 0.0441 (11) | 0.0368 (13) | −0.0032 (9) | −0.0021 (9) | −0.0031 (9) |
| C2 | 0.0422 (12) | 0.0472 (12) | 0.0491 (16) | −0.0032 (10) | 0.0022 (11) | 0.0017 (10) |
| C3 | 0.0555 (14) | 0.0501 (13) | 0.0591 (17) | 0.0100 (11) | 0.0014 (12) | −0.0064 (12) |
| C4 | 0.0485 (13) | 0.0730 (17) | 0.0533 (17) | 0.0060 (13) | 0.0099 (12) | −0.0136 (13) |
| C5 | 0.0592 (15) | 0.0688 (16) | 0.0538 (18) | −0.0099 (13) | 0.0207 (13) | −0.0064 (12) |
| C6 | 0.0537 (13) | 0.0479 (12) | 0.0470 (15) | −0.0034 (11) | 0.0064 (11) | −0.0016 (11) |
| C7 | 0.0344 (11) | 0.0441 (12) | 0.0485 (15) | −0.0015 (10) | −0.0023 (10) | −0.0020 (10) |
| C8 | 0.0345 (10) | 0.0393 (10) | 0.0392 (13) | 0.0005 (9) | −0.0022 (10) | 0.0023 (9) |
| C9 | 0.0346 (10) | 0.0382 (10) | 0.0402 (13) | 0.0003 (9) | −0.0007 (9) | 0.0029 (9) |
| C10 | 0.0375 (11) | 0.0448 (12) | 0.0641 (17) | −0.0057 (10) | 0.0032 (11) | −0.0064 (11) |
| C11 | 0.0354 (11) | 0.0549 (13) | 0.0744 (19) | 0.0005 (10) | 0.0097 (12) | −0.0043 (13) |
| C12 | 0.0437 (12) | 0.0548 (14) | 0.0542 (16) | 0.0068 (11) | 0.0061 (11) | −0.0068 (12) |
| C13 | 0.0389 (11) | 0.0533 (13) | 0.0646 (18) | −0.0006 (10) | 0.0028 (11) | −0.0126 (12) |
Geometric parameters (Å, °)
| S1—C12 | 1.700 (2) | C4—H4 | 0.9300 |
| S1—C9 | 1.717 (2) | C5—C6 | 1.371 (3) |
| N1—C7 | 1.346 (2) | C5—H5 | 0.9300 |
| N1—N2 | 1.389 (2) | C6—H6 | 0.9300 |
| N1—H1 | 0.8600 | C8—C9 | 1.459 (3) |
| N2—C8 | 1.286 (2) | C8—C13 | 1.493 (3) |
| O1—C7 | 1.222 (2) | C9—C10 | 1.361 (3) |
| C1—C6 | 1.387 (3) | C10—C11 | 1.407 (3) |
| C1—C2 | 1.388 (3) | C10—H10 | 0.9300 |
| C1—C7 | 1.492 (3) | C11—C12 | 1.347 (3) |
| C2—C3 | 1.380 (3) | C11—H11 | 0.9300 |
| C2—H2 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.371 (3) | C13—H13A | 0.9600 |
| C3—H3 | 0.9300 | C13—H13B | 0.9600 |
| C4—C5 | 1.370 (3) | C13—H13C | 0.9600 |
| C12—S1—C9 | 92.23 (10) | O1—C7—C1 | 121.45 (18) |
| C7—N1—N2 | 118.85 (17) | N1—C7—C1 | 116.53 (18) |
| C7—N1—H1 | 120.6 | N2—C8—C9 | 116.11 (18) |
| N2—N1—H1 | 120.6 | N2—C8—C13 | 125.55 (19) |
| C8—N2—N1 | 116.57 (17) | C9—C8—C13 | 118.34 (17) |
| C6—C1—C2 | 118.51 (19) | C10—C9—C8 | 128.73 (19) |
| C6—C1—C7 | 117.01 (18) | C10—C9—S1 | 110.31 (16) |
| C2—C1—C7 | 124.48 (19) | C8—C9—S1 | 120.95 (14) |
| C3—C2—C1 | 120.0 (2) | C9—C10—C11 | 113.0 (2) |
| C3—C2—H2 | 120.0 | C9—C10—H10 | 123.5 |
| C1—C2—H2 | 120.0 | C11—C10—H10 | 123.5 |
| C4—C3—C2 | 120.7 (2) | C12—C11—C10 | 112.8 (2) |
| C4—C3—H3 | 119.6 | C12—C11—H11 | 123.6 |
| C2—C3—H3 | 119.6 | C10—C11—H11 | 123.6 |
| C5—C4—C3 | 119.6 (2) | C11—C12—S1 | 111.59 (17) |
| C5—C4—H4 | 120.2 | C11—C12—H12 | 124.2 |
| C3—C4—H4 | 120.2 | S1—C12—H12 | 124.2 |
| C4—C5—C6 | 120.3 (2) | C8—C13—H13A | 109.5 |
| C4—C5—H5 | 119.8 | C8—C13—H13B | 109.5 |
| C6—C5—H5 | 119.8 | H13A—C13—H13B | 109.5 |
| C5—C6—C1 | 120.8 (2) | C8—C13—H13C | 109.5 |
| C5—C6—H6 | 119.6 | H13A—C13—H13C | 109.5 |
| C1—C6—H6 | 119.6 | H13B—C13—H13C | 109.5 |
| O1—C7—N1 | 121.93 (19) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O1i | 0.86 | 2.50 | 3.340 (3) | 166 |
| C2—H2···O1i | 0.93 | 2.43 | 3.251 (3) | 147 |
| C13—H13A···O1i | 0.96 | 2.40 | 3.246 (3) | 147 |
Symmetry codes: (i) −x+1/2, y+1/2, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU6116).
References
- Altomare, A., Cascarano, G., Giacovazzo, C. & Guagliardi, A. (1993). J. Appl. Cryst. 26, 343–350.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
- Okabe, N., Nakamura, T. & Fukuda, H. (1993). Acta Cryst. C49, 1678–1680.
- Qiang, G.-R., Fan, Z., Shan, S., Tian, Y.-L. & Fu, X.-C. (2007). Acta Cryst. E63, o2246–o2248.
- Rigaku (1998). PROCESS-AUTO Rigaku Corporation, Tokyo, Japan.
- Rigaku/MSC (2002). CrystalStructure Rigaku/MSC, The Woodlands, Texas, USA.
- Shan, S., Wang, Z., Huang, Y.-L., Guo, H.-Q. & Li, D.-F. (2011). Acta Cryst. E67, o2497. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Xia, L.-Y., Wang, W.-L., Wang, S.-H., Huang, Y.-L. & Shan, S. (2009). Acta Cryst. E65, o1900. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033101/xu6116sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033101/xu6116Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811033101/xu6116Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

