Abstract
The title compound, C20H22N6 2+·2PF6 −, was prepared by the reaction of 5,5′-bis(bromomethyl)-2,2′-bipyridine with 1-methylimidazole. The main molecule lies on an inversion center located at the mid-point of the C—C bond joining the two pyridine rings. The asymmetric unit therefore contains one half-molecule and one hexafluorophosphate anion. The dihedral angle between the pyridine and imidazole rings is 76.93 (7)°. In the crystal, weak intermolecular C—H⋯F hydrogen bonds contribute to the stabilization of the packing.
Related literature
For related syntheses, see: Sambrook et al. (2006 ▶); Zang et al. (2010 ▶). For related structures, see: Moon et al. (2011 ▶); Zang et al. (2010 ▶). For reference bond lengths, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C20H22N6 2+·2PF6 −
M r = 636.38
Monoclinic,
a = 7.5323 (4) Å
b = 10.7169 (6) Å
c = 15.4602 (9) Å
β = 93.922 (1)°
V = 1245.07 (12) Å3
Z = 2
Mo Kα radiation
μ = 0.29 mm−1
T = 173 K
0.40 × 0.40 × 0.10 mm
Data collection
Bruker APEXII CCD diffractometer
7489 measured reflections
2717 independent reflections
1788 reflections with I > 2σ(I)
R int = 0.049
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.117
S = 1.02
2717 reflections
181 parameters
H-atom parameters constrained
Δρmax = 0.30 e Å−3
Δρmin = −0.29 e Å−3
Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103340X/lx2201sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103340X/lx2201Isup2.hkl
Supplementary material file. DOI: 10.1107/S160053681103340X/lx2201Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C7—H7⋯F1 | 0.95 | 2.23 | 3.111 (3) | 154 |
| C7—H7⋯F4 | 0.95 | 2.39 | 3.230 (3) | 147 |
| C8—H8⋯F1i | 0.95 | 2.50 | 3.163 (3) | 127 |
| C8—H8⋯F2i | 0.95 | 2.50 | 3.446 (3) | 176 |
| C9—H9⋯F2ii | 0.95 | 2.52 | 3.240 (3) | 133 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This research was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2011–0006413).
supplementary crystallographic information
Comment
The title compound was prepared for use as a N-heterocyclic carbene ligand in the formation of coordination polymers in line with similar previously reported compounds (Sambrook et al., 2006; Zang et al., 2010).
In the title compound (Scheme 1, Fig. 1), two pyridine rings are coplanar because the title compound lies on a crystallographic inversion center. The geomeries of the title compound are very similar with those of the previously reported compound (Moon et al., 2011) The dihedral angle between the pyridine and imidazole rings is 76.93 (7)°. All the bond lengths are within normal values (Allen et al., 1987).
The crystal packing (Fig. 2) is stabilized by weak intermolecular C—H···F hydrogen bonds (see, Table 1)
Experimental
A mixture of 1-methylimidazole (0.150 g, 1.83 mmol) and 5,5'-bis(bromomethyl)-2,2'-bipyridine (0.30 g, 0.88 mmol) in 1,4-dioxane (15 ml) was stirred for 10 min and then heated at reflux for 6 h. After cooling to room temperature, Et2O (15 ml) was added and 5,5'-bis((N-methylimidazolium-1-yl)methyl)-2,2'-bipyridine bis(chloride) obtained as a white precipitate was separated by filtration and washed with Et2O. For the anion exchange, an excess of KPF6 was added to the aqueous solution of the chloride salts. After stirring for 1 hr, the title compound as a white precipitate was obtained. X–ray quality single crystals were obtained by slow evaporation of a solution of the title compound in acetonitrile at room temperature.
Refinement
All H-atoms were positioned geometrically and refined using a riding model with d(C—H) = 0.95 Å, Uiso = 1.2Ueq(C) for aromatic, d(C—H) = 0.99 Å, Uiso = 1.2<U>eq(C) for methylene, and d(C—H) = 0.98 Å, Uiso(H) = 1.5Ueq(C) for methyl protons.
Figures
Fig. 1.
The molecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines. (Symmetry code: i) -x + 1, -y + 2, -z + 1)
Fig. 2.
Crystal packing of the title compound with intermolecular C—H···F hydrogen bonds shown as dashed lines. (Symmetry codes: i) -x + 1, -y + 2, -z + 1; ii) x, -y + 3/2, z + 1/2; iii) -x + 1, -y + 1, -z + 1; iv) -x + 1, y - 1/2, -z + 1/2; v) x, y - 1, z).
Crystal data
| C20H22N62+·2PF6− | F(000) = 644 |
| Mr = 636.38 | Dx = 1.697 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 2214 reflections |
| a = 7.5323 (4) Å | θ = 2.3–27.5° |
| b = 10.7169 (6) Å | µ = 0.29 mm−1 |
| c = 15.4602 (9) Å | T = 173 K |
| β = 93.922 (1)° | Plate, colorless |
| V = 1245.07 (12) Å3 | 0.40 × 0.40 × 0.10 mm |
| Z = 2 |
Data collection
| Bruker APEXII CCD diffractometer | 1788 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.049 |
| graphite | θmax = 27.0°, θmin = 2.6° |
| φ and ω scans | h = −9→9 |
| 7489 measured reflections | k = −13→11 |
| 2717 independent reflections | l = −19→17 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.117 | H-atom parameters constrained |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0536P)2 + 0.3234P] where P = (Fo2 + 2Fc2)/3 |
| 2717 reflections | (Δ/σ)max < 0.001 |
| 181 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.6669 (2) | 0.90672 (19) | 0.45131 (12) | 0.0314 (5) | |
| N2 | 0.4666 (2) | 0.75139 (19) | 0.16354 (12) | 0.0292 (5) | |
| N3 | 0.2383 (3) | 0.7410 (2) | 0.07124 (12) | 0.0327 (5) | |
| C1 | 0.6823 (3) | 0.8369 (3) | 0.38058 (15) | 0.0335 (6) | |
| H1 | 0.7937 | 0.7979 | 0.3739 | 0.040* | |
| C2 | 0.5479 (3) | 0.8172 (2) | 0.31630 (14) | 0.0272 (5) | |
| C3 | 0.3880 (3) | 0.8772 (2) | 0.32510 (14) | 0.0292 (5) | |
| H3 | 0.2924 | 0.8675 | 0.2823 | 0.035* | |
| C4 | 0.3687 (3) | 0.9517 (2) | 0.39729 (14) | 0.0272 (5) | |
| H4 | 0.2605 | 0.9952 | 0.4037 | 0.033* | |
| C5 | 0.5085 (3) | 0.9623 (2) | 0.45999 (13) | 0.0232 (5) | |
| C6 | 0.5823 (3) | 0.7291 (2) | 0.24282 (15) | 0.0328 (6) | |
| H6A | 0.7080 | 0.7377 | 0.2288 | 0.039* | |
| H6B | 0.5647 | 0.6423 | 0.2624 | 0.039* | |
| C7 | 0.3074 (3) | 0.7000 (2) | 0.14706 (15) | 0.0327 (6) | |
| H7 | 0.2519 | 0.6430 | 0.1838 | 0.039* | |
| C8 | 0.5004 (3) | 0.8271 (3) | 0.09592 (16) | 0.0365 (6) | |
| H8 | 0.6048 | 0.8755 | 0.0905 | 0.044* | |
| C9 | 0.3580 (3) | 0.8208 (3) | 0.03775 (16) | 0.0393 (6) | |
| H9 | 0.3437 | 0.8636 | −0.0161 | 0.047* | |
| C10 | 0.0635 (3) | 0.7051 (3) | 0.03147 (18) | 0.0451 (7) | |
| H10A | 0.0059 | 0.6473 | 0.0699 | 0.068* | |
| H10B | 0.0783 | 0.6643 | −0.0243 | 0.068* | |
| H10C | −0.0106 | 0.7797 | 0.0222 | 0.068* | |
| P1 | 0.04237 (8) | 0.51966 (6) | 0.32208 (4) | 0.03076 (19) | |
| F1 | 0.24565 (19) | 0.51442 (16) | 0.29682 (10) | 0.0478 (4) | |
| F2 | 0.1084 (2) | 0.48970 (16) | 0.42008 (9) | 0.0504 (4) | |
| F3 | 0.0232 (2) | 0.37450 (15) | 0.30333 (11) | 0.0547 (5) | |
| F4 | −0.0194 (2) | 0.54954 (16) | 0.22308 (10) | 0.0536 (5) | |
| F5 | −0.1585 (2) | 0.52519 (18) | 0.34678 (11) | 0.0563 (5) | |
| F6 | 0.0658 (2) | 0.66508 (15) | 0.33975 (12) | 0.0586 (5) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0241 (10) | 0.0412 (13) | 0.0278 (11) | 0.0060 (9) | −0.0061 (8) | −0.0057 (9) |
| N2 | 0.0271 (10) | 0.0340 (12) | 0.0258 (11) | 0.0016 (8) | −0.0040 (8) | −0.0073 (8) |
| N3 | 0.0268 (11) | 0.0425 (13) | 0.0279 (11) | 0.0007 (9) | −0.0040 (8) | −0.0065 (9) |
| C1 | 0.0228 (12) | 0.0455 (16) | 0.0314 (13) | 0.0080 (11) | −0.0035 (10) | −0.0055 (11) |
| C2 | 0.0273 (12) | 0.0298 (13) | 0.0238 (12) | 0.0005 (10) | −0.0024 (9) | 0.0013 (10) |
| C3 | 0.0263 (12) | 0.0341 (14) | 0.0256 (12) | 0.0019 (10) | −0.0084 (10) | −0.0010 (10) |
| C4 | 0.0217 (11) | 0.0335 (14) | 0.0259 (12) | 0.0044 (10) | −0.0024 (9) | 0.0021 (10) |
| C5 | 0.0247 (11) | 0.0234 (13) | 0.0210 (11) | −0.0002 (9) | −0.0021 (9) | 0.0041 (9) |
| C6 | 0.0274 (13) | 0.0389 (15) | 0.0305 (13) | 0.0065 (11) | −0.0088 (10) | −0.0061 (11) |
| C7 | 0.0319 (13) | 0.0380 (15) | 0.0279 (13) | −0.0030 (11) | 0.0006 (10) | −0.0031 (11) |
| C8 | 0.0315 (13) | 0.0407 (16) | 0.0369 (14) | −0.0113 (11) | −0.0010 (11) | −0.0016 (11) |
| C9 | 0.0456 (16) | 0.0418 (17) | 0.0294 (14) | −0.0044 (12) | −0.0044 (11) | 0.0009 (11) |
| C10 | 0.0281 (14) | 0.063 (2) | 0.0428 (16) | −0.0043 (13) | −0.0095 (12) | −0.0115 (14) |
| P1 | 0.0257 (3) | 0.0360 (4) | 0.0301 (4) | 0.0002 (3) | −0.0017 (3) | 0.0030 (3) |
| F1 | 0.0296 (8) | 0.0637 (11) | 0.0504 (10) | 0.0063 (7) | 0.0055 (7) | 0.0140 (8) |
| F2 | 0.0494 (10) | 0.0695 (12) | 0.0314 (9) | −0.0041 (8) | −0.0042 (7) | 0.0066 (7) |
| F3 | 0.0684 (11) | 0.0394 (10) | 0.0561 (10) | −0.0069 (8) | 0.0020 (9) | −0.0042 (7) |
| F4 | 0.0424 (9) | 0.0776 (13) | 0.0390 (10) | −0.0098 (8) | −0.0112 (7) | 0.0184 (8) |
| F5 | 0.0312 (9) | 0.0749 (13) | 0.0637 (12) | 0.0039 (8) | 0.0106 (8) | 0.0159 (9) |
| F6 | 0.0639 (11) | 0.0363 (10) | 0.0760 (12) | −0.0022 (8) | 0.0072 (9) | −0.0034 (8) |
Geometric parameters (Å, °)
| N1—C1 | 1.336 (3) | C5—C5i | 1.490 (4) |
| N1—C5 | 1.348 (3) | C6—H6A | 0.9900 |
| N2—C7 | 1.329 (3) | C6—H6B | 0.9900 |
| N2—C8 | 1.361 (3) | C7—H7 | 0.9500 |
| N2—C6 | 1.474 (3) | C8—C9 | 1.354 (3) |
| N3—C7 | 1.324 (3) | C8—H8 | 0.9500 |
| N3—C9 | 1.370 (3) | C9—H9 | 0.9500 |
| N3—C10 | 1.466 (3) | C10—H10A | 0.9800 |
| C1—C2 | 1.385 (3) | C10—H10B | 0.9800 |
| C1—H1 | 0.9500 | C10—H10C | 0.9800 |
| C2—C3 | 1.380 (3) | P1—F5 | 1.5869 (16) |
| C2—C6 | 1.513 (3) | P1—F3 | 1.5872 (17) |
| C3—C4 | 1.388 (3) | P1—F6 | 1.5899 (18) |
| C3—H3 | 0.9500 | P1—F2 | 1.5947 (16) |
| C4—C5 | 1.386 (3) | P1—F4 | 1.6014 (16) |
| C4—H4 | 0.9500 | P1—F1 | 1.6069 (15) |
| C1—N1—C5 | 117.10 (19) | N3—C7—H7 | 125.4 |
| C7—N2—C8 | 108.3 (2) | N2—C7—H7 | 125.4 |
| C7—N2—C6 | 124.6 (2) | C9—C8—N2 | 107.4 (2) |
| C8—N2—C6 | 127.2 (2) | C9—C8—H8 | 126.3 |
| C7—N3—C9 | 108.2 (2) | N2—C8—H8 | 126.3 |
| C7—N3—C10 | 124.8 (2) | C8—C9—N3 | 107.0 (2) |
| C9—N3—C10 | 126.9 (2) | C8—C9—H9 | 126.5 |
| N1—C1—C2 | 124.9 (2) | N3—C9—H9 | 126.5 |
| N1—C1—H1 | 117.5 | N3—C10—H10A | 109.5 |
| C2—C1—H1 | 117.5 | N3—C10—H10B | 109.5 |
| C3—C2—C1 | 117.3 (2) | H10A—C10—H10B | 109.5 |
| C3—C2—C6 | 124.1 (2) | N3—C10—H10C | 109.5 |
| C1—C2—C6 | 118.6 (2) | H10A—C10—H10C | 109.5 |
| C2—C3—C4 | 119.2 (2) | H10B—C10—H10C | 109.5 |
| C2—C3—H3 | 120.4 | F5—P1—F3 | 90.25 (10) |
| C4—C3—H3 | 120.4 | F5—P1—F6 | 91.05 (10) |
| C5—C4—C3 | 119.5 (2) | F3—P1—F6 | 178.66 (10) |
| C5—C4—H4 | 120.2 | F5—P1—F2 | 91.12 (9) |
| C3—C4—H4 | 120.2 | F3—P1—F2 | 89.70 (9) |
| N1—C5—C4 | 121.95 (19) | F6—P1—F2 | 90.60 (9) |
| N1—C5—C5i | 116.7 (2) | F5—P1—F4 | 90.18 (9) |
| C4—C5—C5i | 121.4 (2) | F3—P1—F4 | 90.27 (9) |
| N2—C6—C2 | 113.67 (19) | F6—P1—F4 | 89.41 (10) |
| N2—C6—H6A | 108.8 | F2—P1—F4 | 178.70 (9) |
| C2—C6—H6A | 108.8 | F5—P1—F1 | 179.80 (10) |
| N2—C6—H6B | 108.8 | F3—P1—F1 | 89.85 (9) |
| C2—C6—H6B | 108.8 | F6—P1—F1 | 88.84 (9) |
| H6A—C6—H6B | 107.7 | F2—P1—F1 | 89.04 (9) |
| N3—C7—N2 | 109.1 (2) | F4—P1—F1 | 89.66 (8) |
| C5—N1—C1—C2 | −0.4 (4) | C3—C2—C6—N2 | 24.8 (3) |
| N1—C1—C2—C3 | 1.9 (4) | C1—C2—C6—N2 | −157.2 (2) |
| N1—C1—C2—C6 | −176.2 (2) | C9—N3—C7—N2 | 0.4 (3) |
| C1—C2—C3—C4 | −0.9 (3) | C10—N3—C7—N2 | −179.8 (2) |
| C6—C2—C3—C4 | 177.2 (2) | C8—N2—C7—N3 | −0.2 (3) |
| C2—C3—C4—C5 | −1.5 (3) | C6—N2—C7—N3 | 179.07 (19) |
| C1—N1—C5—C4 | −2.2 (3) | C7—N2—C8—C9 | 0.0 (3) |
| C1—N1—C5—C5i | 178.7 (3) | C6—N2—C8—C9 | −179.3 (2) |
| C3—C4—C5—N1 | 3.1 (3) | N2—C8—C9—N3 | 0.2 (3) |
| C3—C4—C5—C5i | −177.8 (3) | C7—N3—C9—C8 | −0.3 (3) |
| C7—N2—C6—C2 | −88.2 (3) | C10—N3—C9—C8 | 179.8 (2) |
| C8—N2—C6—C2 | 91.0 (3) |
Symmetry codes: (i) −x+1, −y+2, −z+1.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C7—H7···F1 | 0.95 | 2.23 | 3.111 (3) | 154. |
| C7—H7···F4 | 0.95 | 2.39 | 3.230 (3) | 147. |
| C8—H8···F1ii | 0.95 | 2.50 | 3.163 (3) | 127. |
| C8—H8···F2ii | 0.95 | 2.50 | 3.446 (3) | 176. |
| C9—H9···F2iii | 0.95 | 2.52 | 3.240 (3) | 133. |
Symmetry codes: (ii) −x+1, y+1/2, −z+1/2; (iii) x, −y+3/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LX2201).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Brandenburg, K. (1998). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Bruker (2006). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Moon, S.-H., Kim, T. H. & Park, K.-M. (2011). Acta Cryst. E67, o554. [DOI] [PMC free article] [PubMed]
- Sambrook, M. R., Curiel, D., Hayes, E. J., Beer, P. D., Pope, S. J. A. & Faulkner, S. (2006). New J. Chem. 30, 1133–1136.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Zang, H.-Y., Lan, Y.-Q., Yang, G.-S., Wang, X.-L., Shao, K.-Z., Xu, G.-J. & Su, Z.-M. (2010). CrystEngComm, 12, 434–445.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103340X/lx2201sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103340X/lx2201Isup2.hkl
Supplementary material file. DOI: 10.1107/S160053681103340X/lx2201Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


