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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 27;67(Pt 9):o2392. doi: 10.1107/S160053681103340X

3,3′-Dimethyl-1,1′-[2,2′-bipyridine-5,5′-diylbis(methyl­ene)]diimidazol-3-ium bis­(hexa­fluoro­phosphate)

Sunhong Park a, Suk-Hee Moon b, Tae Ho Kim a,*, Ki-Min Park a,*
PMCID: PMC3200939  PMID: 22058989

Abstract

The title compound, C20H22N6 2+·2PF6 , was prepared by the reaction of 5,5′-bis­(bromo­meth­yl)-2,2′-bipyridine with 1-methyl­imidazole. The main mol­ecule lies on an inversion center located at the mid-point of the C—C bond joining the two pyridine rings. The asymmetric unit therefore contains one half-mol­ecule and one hexa­fluoro­phosphate anion. The dihedral angle between the pyridine and imidazole rings is 76.93 (7)°. In the crystal, weak inter­molecular C—H⋯F hydrogen bonds contribute to the stabilization of the packing.

Related literature

For related syntheses, see: Sambrook et al. (2006); Zang et al. (2010). For related structures, see: Moon et al. (2011); Zang et al. (2010). For reference bond lengths, see: Allen et al. (1987).graphic file with name e-67-o2392-scheme1.jpg

Experimental

Crystal data

  • C20H22N6 2+·2PF6

  • M r = 636.38

  • Monoclinic, Inline graphic

  • a = 7.5323 (4) Å

  • b = 10.7169 (6) Å

  • c = 15.4602 (9) Å

  • β = 93.922 (1)°

  • V = 1245.07 (12) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.29 mm−1

  • T = 173 K

  • 0.40 × 0.40 × 0.10 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • 7489 measured reflections

  • 2717 independent reflections

  • 1788 reflections with I > 2σ(I)

  • R int = 0.049

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.117

  • S = 1.02

  • 2717 reflections

  • 181 parameters

  • H-atom parameters constrained

  • Δρmax = 0.30 e Å−3

  • Δρmin = −0.29 e Å−3

Data collection: APEX2 (Bruker, 2006); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103340X/lx2201sup1.cif

e-67-o2392-sup1.cif (22.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103340X/lx2201Isup2.hkl

e-67-o2392-Isup2.hkl (133.4KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681103340X/lx2201Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C7—H7⋯F1 0.95 2.23 3.111 (3) 154
C7—H7⋯F4 0.95 2.39 3.230 (3) 147
C8—H8⋯F1i 0.95 2.50 3.163 (3) 127
C8—H8⋯F2i 0.95 2.50 3.446 (3) 176
C9—H9⋯F2ii 0.95 2.52 3.240 (3) 133

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This research was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2011–0006413).

supplementary crystallographic information

Comment

The title compound was prepared for use as a N-heterocyclic carbene ligand in the formation of coordination polymers in line with similar previously reported compounds (Sambrook et al., 2006; Zang et al., 2010).

In the title compound (Scheme 1, Fig. 1), two pyridine rings are coplanar because the title compound lies on a crystallographic inversion center. The geomeries of the title compound are very similar with those of the previously reported compound (Moon et al., 2011) The dihedral angle between the pyridine and imidazole rings is 76.93 (7)°. All the bond lengths are within normal values (Allen et al., 1987).

The crystal packing (Fig. 2) is stabilized by weak intermolecular C—H···F hydrogen bonds (see, Table 1)

Experimental

A mixture of 1-methylimidazole (0.150 g, 1.83 mmol) and 5,5'-bis(bromomethyl)-2,2'-bipyridine (0.30 g, 0.88 mmol) in 1,4-dioxane (15 ml) was stirred for 10 min and then heated at reflux for 6 h. After cooling to room temperature, Et2O (15 ml) was added and 5,5'-bis((N-methylimidazolium-1-yl)methyl)-2,2'-bipyridine bis(chloride) obtained as a white precipitate was separated by filtration and washed with Et2O. For the anion exchange, an excess of KPF6 was added to the aqueous solution of the chloride salts. After stirring for 1 hr, the title compound as a white precipitate was obtained. X–ray quality single crystals were obtained by slow evaporation of a solution of the title compound in acetonitrile at room temperature.

Refinement

All H-atoms were positioned geometrically and refined using a riding model with d(C—H) = 0.95 Å, Uiso = 1.2Ueq(C) for aromatic, d(C—H) = 0.99 Å, Uiso = 1.2<U>eq(C) for methylene, and d(C—H) = 0.98 Å, Uiso(H) = 1.5Ueq(C) for methyl protons.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines. (Symmetry code: i) -x + 1, -y + 2, -z + 1)

Fig. 2.

Fig. 2.

Crystal packing of the title compound with intermolecular C—H···F hydrogen bonds shown as dashed lines. (Symmetry codes: i) -x + 1, -y + 2, -z + 1; ii) x, -y + 3/2, z + 1/2; iii) -x + 1, -y + 1, -z + 1; iv) -x + 1, y - 1/2, -z + 1/2; v) x, y - 1, z).

Crystal data

C20H22N62+·2PF6 F(000) = 644
Mr = 636.38 Dx = 1.697 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2214 reflections
a = 7.5323 (4) Å θ = 2.3–27.5°
b = 10.7169 (6) Å µ = 0.29 mm1
c = 15.4602 (9) Å T = 173 K
β = 93.922 (1)° Plate, colorless
V = 1245.07 (12) Å3 0.40 × 0.40 × 0.10 mm
Z = 2

Data collection

Bruker APEXII CCD diffractometer 1788 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.049
graphite θmax = 27.0°, θmin = 2.6°
φ and ω scans h = −9→9
7489 measured reflections k = −13→11
2717 independent reflections l = −19→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117 H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.0536P)2 + 0.3234P] where P = (Fo2 + 2Fc2)/3
2717 reflections (Δ/σ)max < 0.001
181 parameters Δρmax = 0.30 e Å3
0 restraints Δρmin = −0.29 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.6669 (2) 0.90672 (19) 0.45131 (12) 0.0314 (5)
N2 0.4666 (2) 0.75139 (19) 0.16354 (12) 0.0292 (5)
N3 0.2383 (3) 0.7410 (2) 0.07124 (12) 0.0327 (5)
C1 0.6823 (3) 0.8369 (3) 0.38058 (15) 0.0335 (6)
H1 0.7937 0.7979 0.3739 0.040*
C2 0.5479 (3) 0.8172 (2) 0.31630 (14) 0.0272 (5)
C3 0.3880 (3) 0.8772 (2) 0.32510 (14) 0.0292 (5)
H3 0.2924 0.8675 0.2823 0.035*
C4 0.3687 (3) 0.9517 (2) 0.39729 (14) 0.0272 (5)
H4 0.2605 0.9952 0.4037 0.033*
C5 0.5085 (3) 0.9623 (2) 0.45999 (13) 0.0232 (5)
C6 0.5823 (3) 0.7291 (2) 0.24282 (15) 0.0328 (6)
H6A 0.7080 0.7377 0.2288 0.039*
H6B 0.5647 0.6423 0.2624 0.039*
C7 0.3074 (3) 0.7000 (2) 0.14706 (15) 0.0327 (6)
H7 0.2519 0.6430 0.1838 0.039*
C8 0.5004 (3) 0.8271 (3) 0.09592 (16) 0.0365 (6)
H8 0.6048 0.8755 0.0905 0.044*
C9 0.3580 (3) 0.8208 (3) 0.03775 (16) 0.0393 (6)
H9 0.3437 0.8636 −0.0161 0.047*
C10 0.0635 (3) 0.7051 (3) 0.03147 (18) 0.0451 (7)
H10A 0.0059 0.6473 0.0699 0.068*
H10B 0.0783 0.6643 −0.0243 0.068*
H10C −0.0106 0.7797 0.0222 0.068*
P1 0.04237 (8) 0.51966 (6) 0.32208 (4) 0.03076 (19)
F1 0.24565 (19) 0.51442 (16) 0.29682 (10) 0.0478 (4)
F2 0.1084 (2) 0.48970 (16) 0.42008 (9) 0.0504 (4)
F3 0.0232 (2) 0.37450 (15) 0.30333 (11) 0.0547 (5)
F4 −0.0194 (2) 0.54954 (16) 0.22308 (10) 0.0536 (5)
F5 −0.1585 (2) 0.52519 (18) 0.34678 (11) 0.0563 (5)
F6 0.0658 (2) 0.66508 (15) 0.33975 (12) 0.0586 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0241 (10) 0.0412 (13) 0.0278 (11) 0.0060 (9) −0.0061 (8) −0.0057 (9)
N2 0.0271 (10) 0.0340 (12) 0.0258 (11) 0.0016 (8) −0.0040 (8) −0.0073 (8)
N3 0.0268 (11) 0.0425 (13) 0.0279 (11) 0.0007 (9) −0.0040 (8) −0.0065 (9)
C1 0.0228 (12) 0.0455 (16) 0.0314 (13) 0.0080 (11) −0.0035 (10) −0.0055 (11)
C2 0.0273 (12) 0.0298 (13) 0.0238 (12) 0.0005 (10) −0.0024 (9) 0.0013 (10)
C3 0.0263 (12) 0.0341 (14) 0.0256 (12) 0.0019 (10) −0.0084 (10) −0.0010 (10)
C4 0.0217 (11) 0.0335 (14) 0.0259 (12) 0.0044 (10) −0.0024 (9) 0.0021 (10)
C5 0.0247 (11) 0.0234 (13) 0.0210 (11) −0.0002 (9) −0.0021 (9) 0.0041 (9)
C6 0.0274 (13) 0.0389 (15) 0.0305 (13) 0.0065 (11) −0.0088 (10) −0.0061 (11)
C7 0.0319 (13) 0.0380 (15) 0.0279 (13) −0.0030 (11) 0.0006 (10) −0.0031 (11)
C8 0.0315 (13) 0.0407 (16) 0.0369 (14) −0.0113 (11) −0.0010 (11) −0.0016 (11)
C9 0.0456 (16) 0.0418 (17) 0.0294 (14) −0.0044 (12) −0.0044 (11) 0.0009 (11)
C10 0.0281 (14) 0.063 (2) 0.0428 (16) −0.0043 (13) −0.0095 (12) −0.0115 (14)
P1 0.0257 (3) 0.0360 (4) 0.0301 (4) 0.0002 (3) −0.0017 (3) 0.0030 (3)
F1 0.0296 (8) 0.0637 (11) 0.0504 (10) 0.0063 (7) 0.0055 (7) 0.0140 (8)
F2 0.0494 (10) 0.0695 (12) 0.0314 (9) −0.0041 (8) −0.0042 (7) 0.0066 (7)
F3 0.0684 (11) 0.0394 (10) 0.0561 (10) −0.0069 (8) 0.0020 (9) −0.0042 (7)
F4 0.0424 (9) 0.0776 (13) 0.0390 (10) −0.0098 (8) −0.0112 (7) 0.0184 (8)
F5 0.0312 (9) 0.0749 (13) 0.0637 (12) 0.0039 (8) 0.0106 (8) 0.0159 (9)
F6 0.0639 (11) 0.0363 (10) 0.0760 (12) −0.0022 (8) 0.0072 (9) −0.0034 (8)

Geometric parameters (Å, °)

N1—C1 1.336 (3) C5—C5i 1.490 (4)
N1—C5 1.348 (3) C6—H6A 0.9900
N2—C7 1.329 (3) C6—H6B 0.9900
N2—C8 1.361 (3) C7—H7 0.9500
N2—C6 1.474 (3) C8—C9 1.354 (3)
N3—C7 1.324 (3) C8—H8 0.9500
N3—C9 1.370 (3) C9—H9 0.9500
N3—C10 1.466 (3) C10—H10A 0.9800
C1—C2 1.385 (3) C10—H10B 0.9800
C1—H1 0.9500 C10—H10C 0.9800
C2—C3 1.380 (3) P1—F5 1.5869 (16)
C2—C6 1.513 (3) P1—F3 1.5872 (17)
C3—C4 1.388 (3) P1—F6 1.5899 (18)
C3—H3 0.9500 P1—F2 1.5947 (16)
C4—C5 1.386 (3) P1—F4 1.6014 (16)
C4—H4 0.9500 P1—F1 1.6069 (15)
C1—N1—C5 117.10 (19) N3—C7—H7 125.4
C7—N2—C8 108.3 (2) N2—C7—H7 125.4
C7—N2—C6 124.6 (2) C9—C8—N2 107.4 (2)
C8—N2—C6 127.2 (2) C9—C8—H8 126.3
C7—N3—C9 108.2 (2) N2—C8—H8 126.3
C7—N3—C10 124.8 (2) C8—C9—N3 107.0 (2)
C9—N3—C10 126.9 (2) C8—C9—H9 126.5
N1—C1—C2 124.9 (2) N3—C9—H9 126.5
N1—C1—H1 117.5 N3—C10—H10A 109.5
C2—C1—H1 117.5 N3—C10—H10B 109.5
C3—C2—C1 117.3 (2) H10A—C10—H10B 109.5
C3—C2—C6 124.1 (2) N3—C10—H10C 109.5
C1—C2—C6 118.6 (2) H10A—C10—H10C 109.5
C2—C3—C4 119.2 (2) H10B—C10—H10C 109.5
C2—C3—H3 120.4 F5—P1—F3 90.25 (10)
C4—C3—H3 120.4 F5—P1—F6 91.05 (10)
C5—C4—C3 119.5 (2) F3—P1—F6 178.66 (10)
C5—C4—H4 120.2 F5—P1—F2 91.12 (9)
C3—C4—H4 120.2 F3—P1—F2 89.70 (9)
N1—C5—C4 121.95 (19) F6—P1—F2 90.60 (9)
N1—C5—C5i 116.7 (2) F5—P1—F4 90.18 (9)
C4—C5—C5i 121.4 (2) F3—P1—F4 90.27 (9)
N2—C6—C2 113.67 (19) F6—P1—F4 89.41 (10)
N2—C6—H6A 108.8 F2—P1—F4 178.70 (9)
C2—C6—H6A 108.8 F5—P1—F1 179.80 (10)
N2—C6—H6B 108.8 F3—P1—F1 89.85 (9)
C2—C6—H6B 108.8 F6—P1—F1 88.84 (9)
H6A—C6—H6B 107.7 F2—P1—F1 89.04 (9)
N3—C7—N2 109.1 (2) F4—P1—F1 89.66 (8)
C5—N1—C1—C2 −0.4 (4) C3—C2—C6—N2 24.8 (3)
N1—C1—C2—C3 1.9 (4) C1—C2—C6—N2 −157.2 (2)
N1—C1—C2—C6 −176.2 (2) C9—N3—C7—N2 0.4 (3)
C1—C2—C3—C4 −0.9 (3) C10—N3—C7—N2 −179.8 (2)
C6—C2—C3—C4 177.2 (2) C8—N2—C7—N3 −0.2 (3)
C2—C3—C4—C5 −1.5 (3) C6—N2—C7—N3 179.07 (19)
C1—N1—C5—C4 −2.2 (3) C7—N2—C8—C9 0.0 (3)
C1—N1—C5—C5i 178.7 (3) C6—N2—C8—C9 −179.3 (2)
C3—C4—C5—N1 3.1 (3) N2—C8—C9—N3 0.2 (3)
C3—C4—C5—C5i −177.8 (3) C7—N3—C9—C8 −0.3 (3)
C7—N2—C6—C2 −88.2 (3) C10—N3—C9—C8 179.8 (2)
C8—N2—C6—C2 91.0 (3)

Symmetry codes: (i) −x+1, −y+2, −z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C7—H7···F1 0.95 2.23 3.111 (3) 154.
C7—H7···F4 0.95 2.39 3.230 (3) 147.
C8—H8···F1ii 0.95 2.50 3.163 (3) 127.
C8—H8···F2ii 0.95 2.50 3.446 (3) 176.
C9—H9···F2iii 0.95 2.52 3.240 (3) 133.

Symmetry codes: (ii) −x+1, y+1/2, −z+1/2; (iii) x, −y+3/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LX2201).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Brandenburg, K. (1998). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Bruker (2006). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Moon, S.-H., Kim, T. H. & Park, K.-M. (2011). Acta Cryst. E67, o554. [DOI] [PMC free article] [PubMed]
  5. Sambrook, M. R., Curiel, D., Hayes, E. J., Beer, P. D., Pope, S. J. A. & Faulkner, S. (2006). New J. Chem. 30, 1133–1136.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Zang, H.-Y., Lan, Y.-Q., Yang, G.-S., Wang, X.-L., Shao, K.-Z., Xu, G.-J. & Su, Z.-M. (2010). CrystEngComm, 12, 434–445.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103340X/lx2201sup1.cif

e-67-o2392-sup1.cif (22.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103340X/lx2201Isup2.hkl

e-67-o2392-Isup2.hkl (133.4KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681103340X/lx2201Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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