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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Aug 27;67(Pt 9):o2400. doi: 10.1107/S1600536811033976

4-(2-Azaniumyl­eth­yl)piperazin-1-ium bis(perchlorate)

Mohammad Reza Reisi a, Muhammad Saleh Salga b, Hamid Khaledi b,*, Hapipah Mohd Ali b
PMCID: PMC3200960  PMID: 22064357

Abstract

In the title compound, C6H17N3 2+·2ClO4 , the piperazine ring adopts a chair conformation with the ethyl­ammonium fragment occupying an equatorial position. In the crystal, the dications and perchlorate anions are linked through N—H⋯O hydrogen bonding and weak C—H⋯O hydrogen bonding into a three-dimensional supra­molecular network.

Related literature

For the structures of related salts of the 4-(2-ammonio­ethyl)piperazin-1-ium cation, see: Guerfel et al. (1999); Srinivasan et al. (2008, 2009).graphic file with name e-67-o2400-scheme1.jpg

Experimental

Crystal data

  • C6H17N3 2+·2ClO4

  • M r = 330.13

  • Monoclinic, Inline graphic

  • a = 7.5218 (1) Å

  • b = 11.4371 (2) Å

  • c = 15.2239 (2) Å

  • β = 97.437 (1)°

  • V = 1298.66 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.54 mm−1

  • T = 100 K

  • 0.28 × 0.17 × 0.06 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.863, T max = 0.968

  • 8644 measured reflections

  • 2969 independent reflections

  • 2671 reflections with I > 2σ(I)

  • R int = 0.023

Refinement

  • R[F 2 > 2σ(F 2)] = 0.030

  • wR(F 2) = 0.080

  • S = 1.05

  • 2969 reflections

  • 187 parameters

  • 5 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.27 e Å−3

  • Δρmin = −0.59 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033976/xu5296sup1.cif

e-67-o2400-sup1.cif (16.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033976/xu5296Isup2.hkl

e-67-o2400-Isup2.hkl (145.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811033976/xu5296Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1C⋯O4i 0.90 (2) 2.16 (2) 2.9298 (19) 143 (2)
N1—H1D⋯O3ii 0.88 (2) 2.09 (2) 2.964 (2) 168 (2)
N3—H3C⋯O6i 0.89 (2) 2.38 (2) 3.0741 (19) 135 (2)
N3—H3C⋯O4 0.89 (2) 2.39 (2) 3.0225 (19) 128 (2)
N3—H3D⋯O1iii 0.89 (2) 2.12 (2) 2.9875 (18) 163 (2)
N3—H3E⋯O8iv 0.88 (2) 2.14 (2) 2.9025 (19) 145 (2)
N3—H3E⋯O3 0.88 (2) 2.52 (2) 3.0724 (19) 122 (2)
C1—H1B⋯O7v 0.99 2.56 3.407 (2) 143
C3—H3A⋯O8iii 0.99 2.56 3.226 (2) 124
C5—H5A⋯O5vi 0.99 2.58 3.436 (2) 145
C5—H5B⋯O2iii 0.99 2.46 3.452 (2) 178

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Acknowledgments

The authors thank the University of Malaya for funding this study (PPP grant No. PS359/2009C).

supplementary crystallographic information

Comment

The crystals of the title compound were obtained unexpectedly during an attempt to prepare a tin(IV) complex of 1-(2-aminoethyl)piperazine in the presence of sodium perchlorate. The organic molecule is doubly protonated at its primary and secondary N atoms, while the tertiary N atom, N2, remains unprotonated. Similar to the structures of some other 1-(2-ammoniumethyl)piperazinium salts (Guerfel et al., 1999; Srinivasan et al., 2008, 2009), the piperazine ring adopts a chair conformation with the ethylammonium group occupying an equatorial position. In the crystal, the dicationic organic moieties and perchlorate anions are linked through N—H···O and C—H···O interactions (Table 1) into a three-dimensional supra-molecular network.

Experimental

A mixture of 4-(2-aminoethyl)piperazine (0.26 g, 2 mmol) and Bu2SnCl2 (0.6 g, 2 mmol) in methanol (50 ml) was refluxed for 2 h. NaClO4 (0.56 g, 4 mmol) was then added and the precipitated sodium chloride was filtered off. The filtrate was evaporated and the obtained solid was recrystallized from ethanol at room temperature to give the colorless crystals of the title compound.

Refinement

The C-bound H atoms were placed at calculated positions and were treated as riding on their parent C atoms with C—H = 0.99 Å. The N-bound H atoms were located in a difference Fourier map, and refined with distance restraints of N—H = 0.91 (2) Å. For all H atoms, Uiso(H) was set to 1.2Ueq(carrier atom).

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound with thermal ellipsoids at the 50% probability level. H atoms are drawn as spheres of arbitrary radius.

Crystal data

C6H17N32+·2ClO4 F(000) = 688
Mr = 330.13 Dx = 1.688 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 4052 reflections
a = 7.5218 (1) Å θ = 2.2–30.5°
b = 11.4371 (2) Å µ = 0.54 mm1
c = 15.2239 (2) Å T = 100 K
β = 97.437 (1)° Blade, colourless
V = 1298.66 (3) Å3 0.28 × 0.17 × 0.06 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 2969 independent reflections
Radiation source: fine-focus sealed tube 2671 reflections with I > 2σ(I)
graphite Rint = 0.023
φ and ω scans θmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −9→9
Tmin = 0.863, Tmax = 0.968 k = −14→12
8644 measured reflections l = −19→18

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0388P)2 + 0.8608P] where P = (Fo2 + 2Fc2)/3
2969 reflections (Δ/σ)max = 0.001
187 parameters Δρmax = 0.27 e Å3
5 restraints Δρmin = −0.59 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.3280 (2) 0.44351 (13) 0.34193 (10) 0.0188 (3)
H1C 0.390 (3) 0.5105 (15) 0.3389 (14) 0.023*
H1D 0.268 (3) 0.4345 (19) 0.2884 (11) 0.023*
N2 0.22434 (17) 0.25008 (12) 0.44167 (9) 0.0137 (3)
N3 0.26916 (19) 0.16033 (12) 0.61553 (9) 0.0138 (3)
H3C 0.308 (3) 0.2308 (14) 0.6010 (13) 0.017*
H3D 0.161 (2) 0.1729 (17) 0.6323 (13) 0.017*
H3E 0.340 (2) 0.1314 (17) 0.6606 (11) 0.017*
C1 0.4538 (2) 0.34346 (15) 0.36621 (12) 0.0212 (4)
H1A 0.5295 0.3604 0.4229 0.025*
H1B 0.5334 0.3327 0.3199 0.025*
C2 0.3466 (2) 0.23325 (15) 0.37506 (11) 0.0182 (3)
H2A 0.2769 0.2137 0.3173 0.022*
H2B 0.4289 0.1674 0.3928 0.022*
C3 0.1959 (2) 0.45727 (15) 0.40696 (12) 0.0186 (3)
H3A 0.1099 0.5205 0.3873 0.022*
H3B 0.2595 0.4787 0.4658 0.022*
C4 0.0963 (2) 0.34326 (15) 0.41350 (12) 0.0190 (3)
H4A 0.0095 0.3513 0.4568 0.023*
H4B 0.0289 0.3235 0.3552 0.023*
C5 0.1375 (2) 0.13996 (15) 0.46127 (11) 0.0165 (3)
H5A 0.1257 0.0886 0.4085 0.020*
H5B 0.0160 0.1559 0.4768 0.020*
C6 0.2498 (2) 0.08004 (14) 0.53790 (11) 0.0158 (3)
H6A 0.1911 0.0065 0.5529 0.019*
H6B 0.3694 0.0606 0.5214 0.019*
Cl1 0.72577 (5) 0.21252 (3) 0.61138 (3) 0.01391 (10)
O1 0.90644 (15) 0.24485 (11) 0.64617 (9) 0.0220 (3)
O2 0.71413 (18) 0.18723 (12) 0.51861 (8) 0.0263 (3)
O3 0.67246 (17) 0.10996 (11) 0.65736 (9) 0.0241 (3)
O4 0.60538 (16) 0.30697 (11) 0.62494 (10) 0.0246 (3)
Cl2 0.74537 (5) 0.57603 (3) 0.26377 (2) 0.01355 (10)
O5 0.59033 (15) 0.51100 (11) 0.22387 (8) 0.0188 (3)
O6 0.75093 (17) 0.57359 (11) 0.35894 (8) 0.0200 (3)
O7 0.73342 (17) 0.69479 (10) 0.23263 (8) 0.0204 (3)
O8 0.90557 (15) 0.52178 (11) 0.23899 (8) 0.0202 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0269 (8) 0.0140 (7) 0.0159 (7) −0.0024 (6) 0.0044 (6) 0.0008 (6)
N2 0.0141 (6) 0.0131 (7) 0.0144 (7) −0.0002 (5) 0.0034 (5) 0.0015 (5)
N3 0.0150 (6) 0.0119 (7) 0.0147 (7) −0.0003 (5) 0.0026 (5) 0.0003 (5)
C1 0.0235 (9) 0.0174 (9) 0.0246 (9) 0.0005 (7) 0.0107 (7) 0.0029 (7)
C2 0.0227 (8) 0.0158 (8) 0.0178 (8) −0.0002 (6) 0.0090 (6) 0.0002 (6)
C3 0.0193 (8) 0.0171 (8) 0.0195 (8) 0.0022 (6) 0.0030 (6) 0.0004 (7)
C4 0.0151 (8) 0.0187 (9) 0.0227 (9) 0.0016 (6) 0.0009 (6) 0.0016 (7)
C5 0.0175 (8) 0.0162 (8) 0.0158 (8) −0.0044 (6) 0.0027 (6) −0.0009 (6)
C6 0.0190 (8) 0.0125 (8) 0.0164 (8) −0.0014 (6) 0.0046 (6) −0.0026 (6)
Cl1 0.01169 (18) 0.01297 (19) 0.0174 (2) −0.00018 (13) 0.00309 (13) −0.00125 (14)
O1 0.0125 (6) 0.0229 (7) 0.0300 (7) −0.0028 (5) 0.0010 (5) −0.0039 (5)
O2 0.0263 (7) 0.0354 (8) 0.0176 (7) −0.0007 (6) 0.0045 (5) −0.0055 (6)
O3 0.0219 (6) 0.0207 (7) 0.0290 (7) −0.0045 (5) 0.0012 (5) 0.0090 (5)
O4 0.0155 (6) 0.0157 (6) 0.0437 (8) 0.0021 (5) 0.0076 (5) −0.0067 (6)
Cl2 0.01502 (19) 0.01298 (19) 0.01291 (19) 0.00041 (13) 0.00284 (13) −0.00077 (13)
O5 0.0160 (6) 0.0196 (6) 0.0206 (6) −0.0037 (5) 0.0016 (5) −0.0013 (5)
O6 0.0283 (7) 0.0194 (6) 0.0128 (6) 0.0033 (5) 0.0045 (5) −0.0001 (5)
O7 0.0274 (7) 0.0134 (6) 0.0207 (6) −0.0012 (5) 0.0038 (5) 0.0031 (5)
O8 0.0164 (6) 0.0227 (7) 0.0223 (7) 0.0022 (5) 0.0056 (5) −0.0069 (5)

Geometric parameters (Å, °)

N1—C3 1.499 (2) C3—H3A 0.9900
N1—C1 1.500 (2) C3—H3B 0.9900
N1—H1C 0.902 (15) C4—H4A 0.9900
N1—H1D 0.884 (15) C4—H4B 0.9900
N2—C4 1.463 (2) C5—C6 1.513 (2)
N2—C5 1.467 (2) C5—H5A 0.9900
N2—C2 1.467 (2) C5—H5B 0.9900
N3—C6 1.489 (2) C6—H6A 0.9900
N3—H3C 0.894 (15) C6—H6B 0.9900
N3—H3D 0.894 (15) Cl1—O2 1.4331 (13)
N3—H3E 0.878 (15) Cl1—O1 1.4414 (12)
C1—C2 1.512 (2) Cl1—O4 1.4416 (12)
C1—H1A 0.9900 Cl1—O3 1.4489 (13)
C1—H1B 0.9900 Cl2—O7 1.4376 (12)
C2—H2A 0.9900 Cl2—O6 1.4444 (12)
C2—H2B 0.9900 Cl2—O8 1.4481 (12)
C3—C4 1.513 (2) Cl2—O5 1.4487 (12)
C3—N1—C1 111.60 (13) H3A—C3—H3B 108.3
C3—N1—H1C 109.7 (13) N2—C4—C3 109.53 (13)
C1—N1—H1C 110.3 (13) N2—C4—H4A 109.8
C3—N1—H1D 108.6 (14) C3—C4—H4A 109.8
C1—N1—H1D 111.6 (14) N2—C4—H4B 109.8
H1C—N1—H1D 104.8 (19) C3—C4—H4B 109.8
C4—N2—C5 113.04 (13) H4A—C4—H4B 108.2
C4—N2—C2 109.92 (13) N2—C5—C6 109.07 (13)
C5—N2—C2 111.30 (13) N2—C5—H5A 109.9
C6—N3—H3C 111.2 (13) C6—C5—H5A 109.9
C6—N3—H3D 109.1 (13) N2—C5—H5B 109.9
H3C—N3—H3D 105.1 (18) C6—C5—H5B 109.9
C6—N3—H3E 112.0 (13) H5A—C5—H5B 108.3
H3C—N3—H3E 110.4 (18) N3—C6—C5 108.67 (13)
H3D—N3—H3E 108.8 (18) N3—C6—H6A 110.0
N1—C1—C2 109.35 (14) C5—C6—H6A 110.0
N1—C1—H1A 109.8 N3—C6—H6B 110.0
C2—C1—H1A 109.8 C5—C6—H6B 110.0
N1—C1—H1B 109.8 H6A—C6—H6B 108.3
C2—C1—H1B 109.8 O2—Cl1—O1 110.39 (8)
H1A—C1—H1B 108.3 O2—Cl1—O4 109.44 (8)
N2—C2—C1 109.97 (14) O1—Cl1—O4 109.57 (8)
N2—C2—H2A 109.7 O2—Cl1—O3 109.10 (8)
C1—C2—H2A 109.7 O1—Cl1—O3 109.69 (8)
N2—C2—H2B 109.7 O4—Cl1—O3 108.62 (8)
C1—C2—H2B 109.7 O7—Cl2—O6 109.97 (7)
H2A—C2—H2B 108.2 O7—Cl2—O8 109.73 (8)
N1—C3—C4 109.21 (14) O6—Cl2—O8 109.63 (7)
N1—C3—H3A 109.8 O7—Cl2—O5 109.52 (7)
C4—C3—H3A 109.8 O6—Cl2—O5 109.14 (7)
N1—C3—H3B 109.8 O8—Cl2—O5 108.82 (7)
C4—C3—H3B 109.8

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1C···O4i 0.90 (2) 2.16 (2) 2.9298 (19) 143.(2)
N1—H1D···O3ii 0.88 (2) 2.09 (2) 2.964 (2) 168.(2)
N3—H3C···O6i 0.89 (2) 2.38 (2) 3.0741 (19) 135.(2)
N3—H3C···O4 0.89 (2) 2.39 (2) 3.0225 (19) 128.(2)
N3—H3D···O1iii 0.89 (2) 2.12 (2) 2.9875 (18) 163.(2)
N3—H3E···O8iv 0.88 (2) 2.14 (2) 2.9025 (19) 145.(2)
N3—H3E···O3 0.88 (2) 2.52 (2) 3.0724 (19) 122.(2)
C1—H1B···O7v 0.99 2.56 3.407 (2) 143.
C3—H3A···O8iii 0.99 2.56 3.226 (2) 124.
C5—H5A···O5vi 0.99 2.58 3.436 (2) 145.
C5—H5B···O2iii 0.99 2.46 3.452 (2) 178.

Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1/2, −y+1/2, z−1/2; (iii) x−1, y, z; (iv) x−1/2, −y+1/2, z+1/2; (v) −x+3/2, y−1/2, −z+1/2; (vi) −x+1/2, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5296).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Guerfel, T., Bdiri, M. & Jouini, A. (1999). J. Chem. Crystallogr. 29, 1205–1210.
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Srinivasan, B. R., Dhuri, S. N., Naik, A. R., Näther, C. & Bensch, W. (2008). Polyhedron, 27, 25–34.
  7. Srinivasan, B. R., Naik, A. R., Dhuri, S. N., Näther, C. & Bensch, W. (2009). Polyhedron, 28, 3715–3722.
  8. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033976/xu5296sup1.cif

e-67-o2400-sup1.cif (16.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033976/xu5296Isup2.hkl

e-67-o2400-Isup2.hkl (145.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811033976/xu5296Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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