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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Sep 14;67(Pt 10):o2614. doi: 10.1107/S1600536811035665

2-Methyl-1-phenyl­sulfonyl-1H-indole-3-carbaldehyde

C Ramathilagam a, V Saravanan b, A K Mohanakrishnan b, P R Umarani c, V Manivannan d,*
PMCID: PMC3201221  PMID: 22058759

Abstract

In the title compound, C16H13NO3S, the sulfonyl-bound phenyl ring forms a dihedral angle of 84.17 (6)° with the indole ring system. An intra­molecular C—H⋯O hydrogen bond generates an S(6) ring motif. The crystal structure exhibits weak inter­molecular C—H⋯O hydrogen bonds and π–π inter­actions between the five- and six-membered rings of the indole group [centroid–centroid distance = 3.6871 (9) Å].

Related literature

For the biological activities of indole compounds, see: Chai et al. (2006); Singh et al. (2000); Andreani et al. (2001). For related structures, see: Chakkaravarthi et al. (2007, 2008); Ramathilagam et al. (2011). For graph-set notation, see: Bernstein et al. (1995). graphic file with name e-67-o2614-scheme1.jpg

Experimental

Crystal data

  • C16H13NO3S

  • M r = 299.33

  • Monoclinic, Inline graphic

  • a = 11.6305 (5) Å

  • b = 8.4039 (4) Å

  • c = 14.3128 (8) Å

  • β = 93.126 (1)°

  • V = 1396.87 (12) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 295 K

  • 0.22 × 0.20 × 0.18 mm

Data collection

  • Bruker Kappa APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.949, T max = 0.958

  • 18442 measured reflections

  • 4242 independent reflections

  • 3212 reflections with I > 2σ(I)

  • R int = 0.024

Refinement

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.116

  • S = 1.06

  • 4242 reflections

  • 191 parameters

  • H-atom parameters constrained

  • Δρmax = 0.31 e Å−3

  • Δρmin = −0.27 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811035665/ci5199sup1.cif

e-67-o2614-sup1.cif (17.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811035665/ci5199Isup2.hkl

e-67-o2614-Isup2.hkl (203.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811035665/ci5199Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5⋯O1 0.93 2.28 2.8723 (19) 121
C12—H12⋯O3i 0.93 2.48 3.1664 (19) 131
C16—H16⋯O2ii 0.93 2.48 3.388 (2) 167

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

CR wishes to acknowledge AMET University management, India, for their kind support.

supplementary crystallographic information

Comment

Indole derivatives are found in many natural products and these derivatives exhibit antibacterial, antifungal (Singh et al., 2000) and antitumour activities (Andreani et al., 2001). In addition, certain indole derivatives exhibit anti-hepatitis B virus (Chai et al., 2006) activity.

The geometric parameters of the title molecule (Fig. 1) agree well with those observed in related structures (Chakkaravarthi et al., 2007, 2008; Ramathilagam et al., 2011). The dihedral angle between the benzene (C1–C6) and phenyl rings (C11–C16) is 83.81 (7)°. The sum of bond angles around N1 [359.9°] indicates sp2 hybridization.

The molecular structure is stabilized by a weak intramolecular C—H···O hydrogen bond and the crystal packing is stabilized by weak intermolecular C—H···O hydrogen bonds. The intramolecular C5—H5···O1 hydrogen bond generates an S(6) ring (Bernstein et al., 1995).

Experimental

2-Methylindole-3-carboxaldehyde (5 g, 31.4 mmol) was dissolved in distilled benzene (100 ml). To this benzenesulfonylchloride (6.6 g, 4.8 ml, 37.7 mmol) and 60% aqueous NAOH (32g in 53ml) were added along with tetrabutyl ammonium hydrogensulfate (1.0 g). This two phase system was stirred at room temperature for 2h. It was then diluted with water (200 ml) and the organic layer was separated. The aqueous layer was extracted with benzene (2× 30 ml) and the combined organic extracts were dried (Na2SO4). The solvent was removed completely and the crude product was recrystallized from methanol (m.p 431–433 K).

Refinement

H atoms were positioned geometrically and refined using riding model, with d(C–H) = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic C–H and d(C–H) = 0.96 Å and Uiso(H) = 1.5Ueq(C) for methyl C–H.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with atom labels and 30% probability displacement ellipsoids for non-H atoms.

Crystal data

C16H13NO3S F(000) = 624
Mr = 299.33 Dx = 1.423 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2Ybc Cell parameters from 4242 reflections
a = 11.6305 (5) Å θ = 2.8–30.5°
b = 8.4039 (4) Å µ = 0.24 mm1
c = 14.3128 (8) Å T = 295 K
β = 93.126 (1)° Block, colourless
V = 1396.87 (12) Å3 0.22 × 0.20 × 0.18 mm
Z = 4

Data collection

Bruker Kappa APEXII CCD diffractometer 4242 independent reflections
Radiation source: fine-focus sealed tube 3212 reflections with I > 2σ(I)
graphite Rint = 0.024
ω and φ scans θmax = 30.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −8→16
Tmin = 0.949, Tmax = 0.958 k = −11→11
18442 measured reflections l = −20→20

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.051P)2 + 0.3293P] where P = (Fo2 + 2Fc2)/3
4242 reflections (Δ/σ)max = 0.001
191 parameters Δρmax = 0.31 e Å3
0 restraints Δρmin = −0.27 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.51033 (11) 1.03657 (16) 0.11957 (9) 0.0372 (3)
C2 0.62740 (13) 1.0134 (2) 0.14228 (11) 0.0488 (3)
H2 0.6794 1.0968 0.1382 0.059*
C3 0.66431 (13) 0.8654 (2) 0.17072 (12) 0.0541 (4)
H3 0.7420 0.8486 0.1863 0.065*
C4 0.58737 (14) 0.7403 (2) 0.17652 (11) 0.0509 (4)
H4 0.6148 0.6412 0.1961 0.061*
C5 0.47145 (13) 0.75842 (17) 0.15415 (10) 0.0442 (3)
H5 0.4203 0.6739 0.1581 0.053*
C6 0.43434 (11) 0.90840 (16) 0.12546 (9) 0.0356 (3)
C7 0.33085 (13) 1.12984 (17) 0.07792 (10) 0.0429 (3)
C8 0.44359 (12) 1.17348 (17) 0.08955 (9) 0.0412 (3)
C9 0.22868 (16) 1.2312 (2) 0.05301 (14) 0.0655 (5)
H9A 0.2527 1.3399 0.0472 0.098*
H9B 0.1747 1.2233 0.1012 0.098*
H9C 0.1929 1.1958 −0.0053 0.098*
C10 0.48781 (17) 1.3321 (2) 0.07368 (12) 0.0559 (4)
H10 0.4355 1.4109 0.0545 0.067*
C11 0.13200 (11) 0.92243 (17) 0.19354 (9) 0.0395 (3)
C12 0.18938 (12) 0.90248 (19) 0.27999 (10) 0.0457 (3)
H12 0.2640 0.8624 0.2845 0.055*
C13 0.13415 (16) 0.9431 (2) 0.35933 (11) 0.0569 (4)
H13 0.1717 0.9313 0.4180 0.068*
C14 0.02338 (16) 1.0010 (2) 0.35188 (13) 0.0624 (4)
H14 −0.0138 1.0270 0.4058 0.075*
C15 −0.03304 (14) 1.0211 (2) 0.26584 (13) 0.0613 (4)
H15 −0.1078 1.0608 0.2618 0.074*
C16 0.02108 (12) 0.9824 (2) 0.18524 (11) 0.0516 (4)
H16 −0.0163 0.9964 0.1267 0.062*
N1 0.32271 (9) 0.96653 (14) 0.09734 (8) 0.0411 (3)
O1 0.23308 (10) 0.69878 (14) 0.10309 (9) 0.0575 (3)
O2 0.13304 (10) 0.91043 (19) 0.01249 (8) 0.0667 (4)
O3 0.58819 (13) 1.36833 (15) 0.08380 (10) 0.0742 (4)
S1 0.20015 (3) 0.86138 (5) 0.09314 (2) 0.04468 (12)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0448 (6) 0.0379 (7) 0.0289 (6) −0.0030 (5) 0.0030 (5) −0.0032 (5)
C2 0.0440 (7) 0.0547 (9) 0.0472 (8) −0.0074 (6) −0.0017 (6) −0.0046 (7)
C3 0.0436 (7) 0.0656 (11) 0.0522 (9) 0.0079 (7) −0.0060 (6) −0.0027 (8)
C4 0.0571 (8) 0.0483 (9) 0.0471 (8) 0.0133 (7) 0.0004 (6) 0.0037 (7)
C5 0.0496 (7) 0.0387 (7) 0.0446 (7) 0.0006 (6) 0.0056 (6) 0.0048 (6)
C6 0.0385 (6) 0.0379 (7) 0.0307 (6) 0.0009 (5) 0.0045 (5) 0.0004 (5)
C7 0.0510 (7) 0.0415 (7) 0.0364 (7) 0.0070 (6) 0.0045 (6) 0.0049 (6)
C8 0.0537 (8) 0.0364 (7) 0.0336 (6) −0.0022 (6) 0.0026 (5) −0.0003 (5)
C9 0.0608 (10) 0.0607 (11) 0.0750 (12) 0.0181 (8) 0.0052 (9) 0.0158 (9)
C10 0.0760 (11) 0.0397 (8) 0.0511 (9) −0.0074 (7) −0.0044 (8) 0.0027 (7)
C11 0.0338 (6) 0.0439 (7) 0.0407 (7) −0.0018 (5) 0.0020 (5) 0.0007 (6)
C12 0.0411 (7) 0.0510 (8) 0.0445 (8) 0.0027 (6) −0.0011 (6) 0.0027 (6)
C13 0.0653 (10) 0.0651 (11) 0.0400 (8) 0.0036 (8) 0.0012 (7) 0.0007 (7)
C14 0.0630 (10) 0.0713 (12) 0.0545 (10) 0.0056 (9) 0.0169 (8) −0.0067 (9)
C15 0.0439 (8) 0.0717 (12) 0.0690 (11) 0.0132 (8) 0.0091 (7) −0.0060 (9)
C16 0.0385 (7) 0.0648 (10) 0.0508 (8) 0.0050 (6) −0.0042 (6) 0.0012 (7)
N1 0.0372 (5) 0.0421 (7) 0.0442 (6) −0.0003 (4) 0.0050 (4) 0.0063 (5)
O1 0.0532 (6) 0.0470 (6) 0.0737 (8) −0.0101 (5) 0.0156 (5) −0.0129 (6)
O2 0.0536 (6) 0.1042 (11) 0.0411 (6) −0.0050 (7) −0.0075 (5) −0.0038 (6)
O3 0.0809 (9) 0.0546 (8) 0.0847 (10) −0.0268 (7) −0.0179 (7) 0.0078 (7)
S1 0.03861 (17) 0.0548 (2) 0.0407 (2) −0.00535 (14) 0.00263 (13) −0.00445 (15)

Geometric parameters (Å, °)

C1—C2 1.3962 (19) C9—H9C 0.96
C1—C6 1.3988 (18) C10—O3 1.207 (2)
C1—C8 1.4404 (19) C10—H10 0.93
C2—C3 1.370 (2) C11—C12 1.3835 (19)
C2—H2 0.93 C11—C16 1.3841 (19)
C3—C4 1.386 (2) C11—S1 1.7552 (14)
C3—H3 0.93 C12—C13 1.378 (2)
C4—C5 1.377 (2) C12—H12 0.93
C4—H4 0.93 C13—C14 1.376 (2)
C5—C6 1.3871 (19) C13—H13 0.93
C5—H5 0.93 C14—C15 1.374 (3)
C6—N1 1.4246 (16) C14—H14 0.93
C7—C8 1.363 (2) C15—C16 1.383 (2)
C7—N1 1.4046 (19) C15—H15 0.93
C7—C9 1.490 (2) C16—H16 0.93
C8—C10 1.451 (2) N1—S1 1.6753 (12)
C9—H9A 0.96 O1—S1 1.4242 (13)
C9—H9B 0.96 O2—S1 1.4190 (12)
C2—C1—C6 119.32 (13) O3—C10—C8 124.15 (17)
C2—C1—C8 133.15 (13) O3—C10—H10 117.9
C6—C1—C8 107.53 (12) C8—C10—H10 117.9
C3—C2—C1 118.80 (14) C12—C11—C16 121.52 (13)
C3—C2—H2 120.6 C12—C11—S1 118.64 (10)
C1—C2—H2 120.6 C16—C11—S1 119.77 (11)
C2—C3—C4 120.88 (14) C13—C12—C11 118.90 (14)
C2—C3—H3 119.6 C13—C12—H12 120.6
C4—C3—H3 119.6 C11—C12—H12 120.6
C5—C4—C3 121.96 (15) C14—C13—C12 120.02 (15)
C5—C4—H4 119.0 C14—C13—H13 120.0
C3—C4—H4 119.0 C12—C13—H13 120.0
C4—C5—C6 117.02 (14) C15—C14—C13 120.82 (15)
C4—C5—H5 121.5 C15—C14—H14 119.6
C6—C5—H5 121.5 C13—C14—H14 119.6
C5—C6—C1 122.02 (12) C14—C15—C16 120.14 (15)
C5—C6—N1 131.25 (12) C14—C15—H15 119.9
C1—C6—N1 106.74 (12) C16—C15—H15 119.9
C8—C7—N1 108.28 (12) C15—C16—C11 118.59 (14)
C8—C7—C9 128.68 (14) C15—C16—H16 120.7
N1—C7—C9 123.01 (14) C11—C16—H16 120.7
C7—C8—C1 108.71 (12) C7—N1—C6 108.71 (11)
C7—C8—C10 125.09 (14) C7—N1—S1 125.08 (10)
C1—C8—C10 126.20 (14) C6—N1—S1 126.14 (10)
C7—C9—H9A 109.5 O2—S1—O1 119.54 (8)
C7—C9—H9B 109.5 O2—S1—N1 107.77 (7)
H9A—C9—H9B 109.5 O1—S1—N1 106.19 (6)
C7—C9—H9C 109.5 O2—S1—C11 109.16 (7)
H9A—C9—H9C 109.5 O1—S1—C11 109.24 (7)
H9B—C9—H9C 109.5 N1—S1—C11 103.76 (6)
C6—C1—C2—C3 −0.7 (2) C13—C14—C15—C16 0.2 (3)
C8—C1—C2—C3 178.78 (15) C14—C15—C16—C11 0.5 (3)
C1—C2—C3—C4 0.3 (2) C12—C11—C16—C15 −0.7 (2)
C2—C3—C4—C5 0.1 (2) S1—C11—C16—C15 176.34 (13)
C3—C4—C5—C6 −0.1 (2) C8—C7—N1—C6 2.23 (15)
C4—C5—C6—C1 −0.2 (2) C9—C7—N1—C6 −175.57 (14)
C4—C5—C6—N1 179.63 (14) C8—C7—N1—S1 179.33 (10)
C2—C1—C6—C5 0.6 (2) C9—C7—N1—S1 1.5 (2)
C8—C1—C6—C5 −178.94 (12) C5—C6—N1—C7 178.03 (14)
C2—C1—C6—N1 −179.26 (12) C1—C6—N1—C7 −2.08 (14)
C8—C1—C6—N1 1.17 (14) C5—C6—N1—S1 1.0 (2)
N1—C7—C8—C1 −1.48 (16) C1—C6—N1—S1 −179.15 (9)
C9—C7—C8—C1 176.15 (15) C7—N1—S1—O2 41.89 (14)
N1—C7—C8—C10 178.30 (13) C6—N1—S1—O2 −141.51 (11)
C9—C7—C8—C10 −4.1 (3) C7—N1—S1—O1 171.10 (11)
C2—C1—C8—C7 −179.31 (15) C6—N1—S1—O1 −12.30 (13)
C6—C1—C8—C7 0.18 (15) C7—N1—S1—C11 −73.79 (13)
C2—C1—C8—C10 0.9 (2) C6—N1—S1—C11 102.82 (12)
C6—C1—C8—C10 −179.60 (13) C12—C11—S1—O2 −172.81 (12)
C7—C8—C10—O3 −179.51 (16) C16—C11—S1—O2 10.03 (16)
C1—C8—C10—O3 0.2 (3) C12—C11—S1—O1 54.80 (13)
C16—C11—C12—C13 0.2 (2) C16—C11—S1—O1 −122.36 (13)
S1—C11—C12—C13 −176.90 (13) C12—C11—S1—N1 −58.13 (13)
C11—C12—C13—C14 0.6 (3) C16—C11—S1—N1 124.72 (13)
C12—C13—C14—C15 −0.8 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C5—H5···O1 0.93 2.28 2.8723 (19) 121
C12—H12···O3i 0.93 2.48 3.1664 (19) 131
C16—H16···O2ii 0.93 2.48 3.388 (2) 167

Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x, −y+2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CI5199).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811035665/ci5199sup1.cif

e-67-o2614-sup1.cif (17.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811035665/ci5199Isup2.hkl

e-67-o2614-Isup2.hkl (203.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811035665/ci5199Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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