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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Sep 30;67(Pt 10):o2814. doi: 10.1107/S1600536811039614

1-Methyl-3-(4-chloro­benzo­yl)imidazo[1,2-a]pyridin-1-ium-2-olate

Victor B Rybakov a,*, Eugene V Babaev a
PMCID: PMC3201236  PMID: 22064572

Abstract

In the mol­ecule of the title compound, C15H11ClN2O2, the nine-membered heterobicycle is approximately planar [largest deviation from least-squares plane = 0.012 (2) Å] and forms a dihedral angle of 51.14 (8)° with the plane of the 4-chloro­phenyl group. There is a non-classical intra­molecular hydrogen bond between the pyridine α-H atom and the O atom of the benzoyl group. The crystal structure is stabilized by weak C—H⋯O and C—H⋯Cl inter­actions involving the ‘olate’ O atom and the Cl atom attached to the benzoyl group as acceptors.

Related literature

For related structures, see: Friedman et al. (1978); Rybakov et al. (1999, 2000a ,b , 2001, 2002). For the synthesis of 1-methyl-2-oxo-2,3-dihydro­imidazopyridinium perchlorate, see: Sych & Gorb (1976). For a description of the Cambridge Structural Database, see: Allen (2002).graphic file with name e-67-o2814-scheme1.jpg

Experimental

Crystal data

  • C15H11ClN2O2

  • M r = 286.71

  • Monoclinic, Inline graphic

  • a = 8.190 (8) Å

  • b = 13.914 (3) Å

  • c = 11.675 (4) Å

  • β = 102.38 (2)°

  • V = 1299.5 (14) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.30 mm−1

  • T = 295 K

  • 0.30 × 0.30 × 0.30 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • 2675 measured reflections

  • 2546 independent reflections

  • 1486 reflections with I > 2σ(I)

  • R int = 0.042

  • 1 standard reflections every 200 reflections intensity decay: 2%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.107

  • S = 0.94

  • 2546 reflections

  • 182 parameters

  • H-atom parameters constrained

  • Δρmax = 0.15 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: CAD-4 Software (Enraf–Nonius, 1994); cell refinement: CAD-4 Software ; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811039614/yk2022sup1.cif

e-67-o2814-sup1.cif (17.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039614/yk2022Isup2.hkl

e-67-o2814-Isup2.hkl (125.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811039614/yk2022Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5⋯O30 0.93 2.30 2.863 (3) 119
C8—H8⋯O2i 0.93 2.47 3.291 (4) 148
C32—H32⋯Cl34ii 0.93 2.93 3.794 (3) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors are indebted to I. V. Dlinnykh for the preparation of title compound. The authors wish to thank Russian Foundation for Basic Research for covering the licence fee for use of the Cambridge Structural Database ver. 5.32 (Allen, 2002).

supplementary crystallographic information

Comment

Early we described crystal structures of "pyridylglycine" I (Rybakov et al., 1999) (Fig. 1) and the product of its cyclocondensation – 2-oxoimidazo[1,2-a]pyridine II (Rybakov et al., 2000a) (Fig. 1). According to Sych & Gorb (1976), we have also performed selective N–methylation of II and investigated the molecular and crystal structures of the resulting salt III (Rybakov et al., 2000b) (Fig. 1). In the present paper we continue the sequence I-II-III and report the molecular structure of the acylated derivative of the compound III - the mesoionic 1-methyl-3-(p–chlorobenzoyl)imidazo[1,2-a] pyridinium-2-olate IV (Fig. 1). The acylation of III was performed by using of 4-chlorobenzoyl chloride in the presence of triethylamine leading to green crystals of the derivative IV with the 60% yield.

The molecular structure of the mesoionic compound IV (Fig. 2) displays some remarkable features early observed for analogous fused imidazopyridines (Friedman et al., 1978) and oxazolopyridines (Rybakov et al., 2001; Rybakov et al., 2002). In particular, in the moiety O10═ C30—C3—C2═O2 the bonds length C3—C30 and C2—C3 correspond to single bonds (~1.43 Å), whereas the bonds length C30═O30 and C2═ O2 (~1.23 Å) correspond to double bonds, thus displaying the unusual ylide-like pattern of the imidazolone fragment. On the other hand, the sequence C5═C6–C7═C8 displays alternation of the bonds length, thus corresponding to quasi-diene fragment of the pyridine ring. These facts seem to be common to the entire class of azolopyridinium-2-olates. The intramolecular interaction C5—H5···O30 with parameters H5···O30 = 2.296 Å, C5···O30 = 2.863 (3)Å and angle C5—H5···O30 = 118.83° (Table 1) is found. The molecules in crystal are linked by weak intermolecular interactions: C8—H8···O2i with parameters H8···O2i = 2.466 Å, C8···O2i = 3.291 (4)Å and angle C8—H8···O2i = 147.86°; C32—H32···Cl34ii with parameters H32···Cl34ii = 2.931 Å, C32···Cl34 = 3.794 (3)Å and angle C32—H32···Cl34ii = 154.93°. Symmetry codes: (i) -x, y + 1/2, -z + 1/2; (ii) -x + 1, y + 1/2, -z + 1/2.

Experimental

1-Methyl-2-oxo-2,3-dihydroimidazopyridinium perchlorate III was obtained as described by Sych & Gorb (1976) (Fig. 2). In order to obtain 1-methyl-3-(4-chlorobenzoyl)imidazo[1,2-a]pyridinium-2-olate IV, triethylamine (2.24 ml, 0.016 mol) was added slowly to the solution of 2.0 g (8 mmol) III in 10 ml of acetonitrile, and 1.4 g (8 mmol) of 4-chlorobenzoil chloride was added to the obtained mixture. The reaction flask was stirred at room temperature for 1 h and then kept overnight. The precipitate was filtered and recrystallized from isopropyl alcohol. The yield was 1.3 g (60%). M.p. 479–481 K. 1H NMR spectra (DMSO-d6, p.p.m.): 9.96 (d, 1H, 9-H), 7.85 (dd, 1H, 8-H), 7.68 (m, 2H, p-ClPh), 7.61 (d, 1H, 6-H), 7.44 (m, 2H, p-ClPh), 7.34 (dd, 1H, 7-H), 3.38 (s, 3H, 4-Me). The numbering of protons is given according to the atoms numbering on Fig. 1.

Refinement

All the hydrogen atoms in the molecule were placed geometrically and allowed to ride on their parent atoms with C—H distance in the range 0.93Å and 0.96Å and with Uiso(H) = 1.5Ueq(C) for CH3 group and Uiso(H) = 1.2Ueq(C) for the aryl groups.

Figures

Fig. 1.

Fig. 1.

Synthesis path for IV.

Fig. 2.

Fig. 2.

ORTEP-3 (Farrugia, 1997) plot of the molecule IV with the atom numbering scheme. Displacement ellipsoids are shown at the 50% probability level. H atoms are presented as small spheres of arbitrary radius.

Crystal data

C15H11ClN2O2 F(000) = 592
Mr = 286.71 Dx = 1.465 Mg m3
Monoclinic, P21/c Melting point = 479–481 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 8.190 (8) Å Cell parameters from 25 reflections
b = 13.914 (3) Å θ = 13.0–14.8°
c = 11.675 (4) Å µ = 0.30 mm1
β = 102.38 (2)° T = 295 K
V = 1299.5 (14) Å3 Prism, green
Z = 4 0.30 × 0.30 × 0.30 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Rint = 0.042
Radiation source: fine-focus sealed tube θmax = 26.0°, θmin = 2.3°
graphite h = −10→9
non–profiled ω scans k = 0→17
2675 measured reflections l = 0→14
2546 independent reflections 1 standard reflections every 200 reflections
1486 reflections with I > 2σ(I) intensity decay: 2%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107 H-atom parameters constrained
S = 0.94 w = 1/[σ2(Fo2) + (0.0433P)2] where P = (Fo2 + 2Fc2)/3
2546 reflections (Δ/σ)max < 0.001
182 parameters Δρmax = 0.15 e Å3
0 restraints Δρmin = −0.26 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.0863 (3) 0.54749 (15) 0.22101 (19) 0.0505 (6)
C2 0.1226 (3) 0.45544 (18) 0.1820 (2) 0.0449 (6)
O2 0.0815 (2) 0.38150 (13) 0.22548 (16) 0.0594 (5)
C3 0.2076 (3) 0.47398 (16) 0.0895 (2) 0.0424 (6)
N4 0.2102 (2) 0.57470 (13) 0.07555 (17) 0.0416 (5)
C5 0.2755 (3) 0.62878 (19) −0.0013 (2) 0.0521 (7)
H5 0.3244 0.5997 −0.0574 0.063*
C6 0.2675 (4) 0.7264 (2) 0.0060 (3) 0.0646 (9)
H6 0.3118 0.7641 −0.0457 0.078*
C7 0.1947 (4) 0.7704 (2) 0.0887 (3) 0.0690 (9)
H7 0.1903 0.8371 0.0920 0.083*
C8 0.1292 (4) 0.71635 (19) 0.1653 (3) 0.0609 (8)
H8 0.0801 0.7453 0.2213 0.073*
C9 0.1377 (3) 0.61773 (18) 0.1577 (2) 0.0469 (6)
C11 −0.0063 (4) 0.5623 (2) 0.3124 (3) 0.0725 (9)
H11A 0.0696 0.5797 0.3840 0.109*
H11B −0.0636 0.5041 0.3240 0.109*
H11C −0.0863 0.6129 0.2895 0.109*
C30 0.2748 (3) 0.40950 (17) 0.0162 (2) 0.0459 (6)
O30 0.3115 (3) 0.43543 (13) −0.07607 (15) 0.0659 (6)
C31 0.3064 (3) 0.30759 (17) 0.0552 (2) 0.0390 (6)
C32 0.3762 (3) 0.28280 (17) 0.1699 (2) 0.0451 (6)
H32 0.3955 0.3304 0.2271 0.054*
C33 0.4177 (3) 0.18918 (18) 0.2012 (2) 0.0463 (6)
H33 0.4654 0.1733 0.2785 0.056*
C34 0.3869 (3) 0.11962 (17) 0.1154 (2) 0.0450 (6)
Cl34 0.43791 (11) 0.00078 (5) 0.15427 (8) 0.0725 (3)
C35 0.3144 (3) 0.14142 (17) 0.0010 (2) 0.0478 (7)
H35 0.2914 0.0931 −0.0552 0.057*
C36 0.2766 (3) 0.23515 (18) −0.0291 (2) 0.0460 (7)
H36 0.2305 0.2507 −0.1068 0.055*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0450 (14) 0.0641 (14) 0.0448 (14) 0.0060 (11) 0.0150 (12) −0.0039 (12)
C2 0.0378 (16) 0.0555 (15) 0.0389 (15) 0.0004 (12) 0.0023 (13) −0.0033 (13)
O2 0.0603 (13) 0.0647 (12) 0.0568 (13) −0.0035 (10) 0.0208 (11) 0.0127 (10)
C3 0.0415 (15) 0.0452 (13) 0.0396 (15) 0.0000 (11) 0.0071 (13) 0.0030 (11)
N4 0.0339 (12) 0.0468 (11) 0.0409 (12) 0.0017 (9) 0.0012 (10) 0.0011 (10)
C5 0.0418 (17) 0.0627 (17) 0.0506 (17) 0.0017 (13) 0.0071 (14) 0.0112 (14)
C6 0.050 (2) 0.0561 (17) 0.082 (2) −0.0012 (14) 0.0015 (18) 0.0165 (16)
C7 0.056 (2) 0.0515 (17) 0.089 (3) 0.0079 (15) −0.0079 (19) −0.0010 (18)
C8 0.0476 (19) 0.0582 (17) 0.072 (2) 0.0084 (14) 0.0022 (17) −0.0111 (16)
C9 0.0372 (16) 0.0568 (15) 0.0460 (17) 0.0101 (12) 0.0071 (13) −0.0063 (13)
C11 0.069 (2) 0.098 (2) 0.057 (2) 0.0132 (18) 0.0286 (18) −0.0073 (18)
C30 0.0430 (16) 0.0554 (16) 0.0382 (16) −0.0002 (12) 0.0060 (13) 0.0004 (12)
O30 0.0985 (17) 0.0675 (12) 0.0383 (11) 0.0132 (11) 0.0289 (12) 0.0086 (10)
C31 0.0336 (14) 0.0519 (14) 0.0291 (14) 0.0011 (11) 0.0012 (11) −0.0001 (11)
C32 0.0471 (17) 0.0500 (14) 0.0359 (15) −0.0021 (12) 0.0037 (13) −0.0056 (12)
C33 0.0409 (16) 0.0557 (15) 0.0392 (15) 0.0044 (12) 0.0019 (12) 0.0035 (13)
C34 0.0362 (15) 0.0475 (14) 0.0536 (17) 0.0070 (11) 0.0149 (14) 0.0050 (13)
Cl34 0.0791 (6) 0.0543 (4) 0.0870 (7) 0.0176 (4) 0.0246 (5) 0.0101 (4)
C35 0.0469 (17) 0.0510 (15) 0.0434 (16) 0.0013 (12) 0.0055 (13) −0.0132 (13)
C36 0.0412 (16) 0.0596 (16) 0.0343 (15) 0.0038 (12) 0.0016 (13) −0.0043 (12)

Geometric parameters (Å, °)

Cl34—C34 1.742 (2) C5—H5 0.9300
N4—C5 1.365 (3) C30—O30 1.233 (3)
N4—C9 1.370 (3) C30—C31 1.495 (3)
N4—C3 1.412 (3) C31—C32 1.382 (3)
C2—C3 1.428 (3) C31—C36 1.393 (3)
C3—C30 1.429 (3) C32—C33 1.376 (3)
C2—O2 1.226 (3) C32—H32 0.9300
C2—N1 1.412 (3) C33—C34 1.377 (3)
N1—C9 1.346 (3) C33—H33 0.9300
N1—C11 1.450 (3) C34—C35 1.374 (3)
C9—C8 1.378 (3) C35—C36 1.369 (3)
C8—C7 1.364 (4) C35—H35 0.9300
C8—H8 0.9300 C36—H36 0.9300
C7—C6 1.382 (4) C11—H11A 0.9600
C7—H7 0.9300 C11—H11B 0.9600
C6—C5 1.364 (4) C11—H11C 0.9600
C6—H6 0.9300
C5—N4—C9 120.6 (2) O30—C30—C3 122.5 (2)
C5—N4—C3 129.8 (2) O30—C30—C31 119.0 (2)
C9—N4—C3 109.5 (2) C3—C30—C31 118.5 (2)
N4—C3—C2 106.7 (2) C32—C31—C36 118.5 (2)
N4—C3—C30 122.5 (2) C32—C31—C30 122.7 (2)
C2—C3—C30 130.7 (2) C36—C31—C30 118.6 (2)
O2—C2—N1 122.1 (2) C33—C32—C31 121.4 (2)
O2—C2—C3 133.4 (2) C33—C32—H32 119.3
N1—C2—C3 104.5 (2) C31—C32—H32 119.3
C9—N1—C2 111.7 (2) C32—C33—C34 118.4 (2)
C9—N1—C11 125.1 (2) C32—C33—H33 120.8
C2—N1—C11 123.1 (2) C34—C33—H33 120.8
N1—C9—N4 107.5 (2) C35—C34—C33 121.7 (2)
N1—C9—C8 131.5 (3) C35—C34—Cl34 119.5 (2)
N4—C9—C8 121.0 (3) C33—C34—Cl34 118.8 (2)
C7—C8—C9 118.4 (3) C36—C35—C34 119.1 (2)
C7—C8—H8 120.8 C36—C35—H35 120.4
C9—C8—H8 120.8 C34—C35—H35 120.4
C8—C7—C6 120.2 (3) C35—C36—C31 120.8 (2)
C8—C7—H7 119.9 C35—C36—H36 119.6
C6—C7—H7 119.9 C31—C36—H36 119.6
C5—C6—C7 121.3 (3) N1—C11—H11A 109.5
C5—C6—H6 119.4 N1—C11—H11B 109.5
C7—C6—H6 119.4 N1—C11—H11C 109.5
C6—C5—N4 118.5 (3) H11A—C11—H11B 109.5
C6—C5—H5 120.7 H11A—C11—H11C 109.5
N4—C5—H5 120.7 H11B—C11—H11C 109.5
C5—N4—C3—C2 −179.6 (2) C8—C7—C6—C5 0.1 (5)
C9—N4—C3—C2 2.5 (3) C7—C6—C5—N4 −0.2 (4)
C5—N4—C3—C30 −2.0 (4) C9—N4—C5—C6 0.3 (4)
C9—N4—C3—C30 −179.9 (2) C3—N4—C5—C6 −177.5 (2)
N4—C3—C2—O2 176.9 (3) N4—C3—C30—O30 −13.5 (4)
C30—C3—C2—O2 −0.5 (5) C2—C3—C30—O30 163.5 (3)
N4—C3—C2—N1 −2.5 (3) N4—C3—C30—C31 164.6 (2)
C30—C3—C2—N1 −179.8 (3) C2—C3—C30—C31 −18.4 (4)
O2—C2—N1—C9 −177.7 (2) O30—C30—C31—C32 136.1 (3)
C3—C2—N1—C9 1.8 (3) C3—C30—C31—C32 −42.1 (4)
O2—C2—N1—C11 −2.0 (4) O30—C30—C31—C36 −38.7 (4)
C3—C2—N1—C11 177.5 (2) C3—C30—C31—C36 143.1 (2)
C2—N1—C9—N4 −0.3 (3) C36—C31—C32—C33 0.7 (4)
C11—N1—C9—N4 −175.9 (2) C30—C31—C32—C33 −174.1 (2)
C2—N1—C9—C8 −179.5 (3) C31—C32—C33—C34 −0.5 (4)
C11—N1—C9—C8 4.9 (5) C32—C33—C34—C35 −0.9 (4)
C5—N4—C9—N1 −179.5 (2) C32—C33—C34—Cl34 −179.66 (19)
C3—N4—C9—N1 −1.4 (3) C33—C34—C35—C36 2.0 (4)
C5—N4—C9—C8 −0.2 (4) Cl34—C34—C35—C36 −179.18 (19)
C3—N4—C9—C8 177.9 (3) C34—C35—C36—C31 −1.8 (4)
N1—C9—C8—C7 179.3 (3) C32—C31—C36—C35 0.5 (4)
N4—C9—C8—C7 0.1 (4) C30—C31—C36—C35 175.5 (2)
C9—C8—C7—C6 −0.1 (5)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C5—H5···O30 0.93 2.30 2.863 (3) 119.
C8—H8···O2i 0.93 2.47 3.291 (4) 148.
C32—H32···Cl34ii 0.93 2.93 3.794 (3) 155.

Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) −x+1, y+1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: YK2022).

References

  1. Allen, F. H. (2002). Acta Cryst. B58, 380–388. [DOI] [PubMed]
  2. Enraf–Nonius (1994). CAD–4 Software Enraf–Nonius, Delft, The Netherlands.
  3. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  4. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  5. Friedman, A. E., Anderson, W. K. & Shefter, E. (1978). Cryst. Struct. Commun. 7, 723–726.
  6. Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
  7. Rybakov, V. B., Babaev, E. V., Pasichnichenko, K. Yu. & Sonneveld, E. J. (2002). Crystallogr. Rep. 47, 69–74.
  8. Rybakov, V. B., Zhukov, S. G., Babaev, E. V., Mazina, O. S. & Aslanov, L. A. (1999). Crystallogr. Rep. 44, 997–999.
  9. Rybakov, V. B., Zhukov, S. G., Babaev, E. V., Mazina, O. S. & Aslanov, L. A. (2000a). Crystallogr. Rep. 45, 103–104.
  10. Rybakov, V. B., Zhukov, S. G., Babaev, E. V., Mazina, O. S. & Aslanov, L. A. (2000b). Crystallogr. Rep. 45, 261–263.
  11. Rybakov, V. B., Zhukov, S. G., Babaev, E. V. & Sonneveld, E. J. (2001). Crystallogr. Rep. 46, 385–388.
  12. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  13. Sych, E. D. & Gorb, L. T. (1976). Ukr. Khim. Zh. (Russ. Ed.), 9, 961–963.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811039614/yk2022sup1.cif

e-67-o2814-sup1.cif (17.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039614/yk2022Isup2.hkl

e-67-o2814-Isup2.hkl (125.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811039614/yk2022Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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