Abstract
The title molecule, C13H17ClN2O3S, shows an anti and syn disposition of the butanoyl and 2,5-dimethoxyphenyl groups with respect to the thione and is stabilized by intramolecular N—H⋯O and weak C—H⋯S hydrogen bonds. In the crystal, intermolecular N—H⋯S hydrogen bonds link the molecules into centrosymmetric dimers. The crystal structure is stabilized by weak C—H⋯O and C—H⋯S contacts.
Related literature
For the structures of related thioureas, see: Yamin et al. (2011 ▶); Yusof et al. (2011 ▶).
Experimental
Crystal data
C13H17ClN2O3S
M r = 316.80
Triclinic,
a = 7.6882 (18) Å
b = 9.151 (2) Å
c = 10.939 (3) Å
α = 98.536 (5)°
β = 97.787 (5)°
γ = 101.489 (5)°
V = 734.9 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.41 mm−1
T = 298 K
0.29 × 0.25 × 0.19 mm
Data collection
Bruker SMART APEX CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.890, T max = 0.926
9303 measured reflections
3351 independent reflections
2928 reflections with I > 2σ(I)
R int = 0.018
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.105
S = 1.06
3351 reflections
181 parameters
H-atom parameters constrained
Δρmax = 0.24 e Å−3
Δρmin = −0.22 e Å−3
Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036002/bh2378sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036002/bh2378Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811036002/bh2378Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2A⋯O1 | 0.86 | 1.93 | 2.663 (2) | 141 |
| C7—H7A⋯S1 | 0.93 | 2.51 | 3.1853 (18) | 129 |
| N1—H1A⋯S1i | 0.86 | 2.58 | 3.4058 (16) | 161 |
| C3—H3A⋯S1i | 0.97 | 2.83 | 3.5633 (19) | 133 |
| C12—H12A⋯O2ii | 0.96 | 2.50 | 3.259 (3) | 136 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank the Malaysian Government, Universiti Kebangsaan Malaysia, the Faculty of Science and Technology, Universiti Malaysia Terengganu, and the Ministry of Higher Education, Malaysia, for research grants UKM-GUP-NBT-08–27–110 and FRGS 59178.
supplementary crystallographic information
Comment
The title compound (Fig. 1) is analogous to the previously reported N-(4-chlorobutanoyl)-N'-(2-fluorophenyl)thiourea (Yusof et al., 2011) except that the methoxy groups are attached at the 2 and 5 positions of the phenyl ring. The carbonylthiourea fragment C4/O1/N1/C5/S1/N2 and the benzene ring, C6···C11, are each planar with the maximum deviation from the least-squares planes of 0.024 (2) Å for atom C4. The benzene ring and carbonylthiourea moiety form a dihedral angle of 5.67 (6)°, much smaller than angles observed in the previously reported thioureas N-(4-chlorobutanoyl)-N'-(2-fluorophenyl)thiourea [74.78 (19)° and 82.3 (2)° for two independent molecules] and N-(4-chlorobutanoyl)-N'-phenylthiourea [72.98 (12)° and 81.47 (14)° for two independent molecules] (Yusof et al., 2011; Yamin et al., 2011). The bond lengths and angles in the title thiourea are in normal ranges and comparable to those in the analogous compounds. The molecule maintains the trans-cis configuration with respect to the position of the butanoyl and 2,5-dimethoxyphenyl groups against the thiono C=S group bond across their C—N bonds.
The molecule is stabilized by three intramolecular contacts, N—H···O and C—H···S. In the crystal packing, the molecules are linked by N—H···S, C—H···S and C—H···O intermolecular hydrogen bonds (symmetry codes as in Table 1) and form dimers (Fig. 2).
Experimental
A solution of 4-chlorobutanoylisothiocyanate (1.25 g, 6.33 mmol) in 30 ml of acetone was added into a flask containing 30 ml acetone solution of 2,5-dimethoxyaniline (0.82 g, 6.33 mmol). The mixture was refluxed for 1 h. Then, the solution was filtered-off and left to evaporate at room temperature. The colourless solid was obtained after one day of evaporation (yield 74%).
Refinement
H atoms bonded to C atoms were positioned geometrically with C—H = 0.93–0.97 Å and constrained to ride on their parent atoms with Uiso(H)= xUeq(parent atom) where x=1.5 for CH3 group and 1.2 for CH and CH2 groups. Amine H atoms were also placed in idealized positions and refined with N—H bond lengths restrained to 0.86 Å and Uiso(H)= 1.2Ueq(parent N atom).
Figures
Fig. 1.
The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level.
Fig. 2.
A packing diagram of the title compound viewed down the b axis. Hydrogen bonds are shown as dashed lines.
Crystal data
| C13H17ClN2O3S | Z = 2 |
| Mr = 316.80 | F(000) = 332 |
| Triclinic, P1 | Dx = 1.432 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.6882 (18) Å | Cell parameters from 934 reflections |
| b = 9.151 (2) Å | θ = 1.9–27.5° |
| c = 10.939 (3) Å | µ = 0.41 mm−1 |
| α = 98.536 (5)° | T = 298 K |
| β = 97.787 (5)° | Slab, colourless |
| γ = 101.489 (5)° | 0.29 × 0.25 × 0.19 mm |
| V = 734.9 (3) Å3 |
Data collection
| Bruker SMART APEX CCD area-detector diffractometer | 3351 independent reflections |
| Radiation source: fine-focus sealed tube | 2928 reflections with I > 2/s(I) |
| graphite | Rint = 0.018 |
| Detector resolution: 83.66 pixels mm-1 | θmax = 27.5°, θmin = 1.9° |
| ω scan | h = −9→9 |
| Absorption correction: multi-scan (SADABS; Bruker, 2000) | k = −11→11 |
| Tmin = 0.890, Tmax = 0.926 | l = −14→14 |
| 9303 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.105 | H-atom parameters constrained |
| S = 1.06 | w = 1/[σ2(Fo2) + (0.053P)2 + 0.1878P] where P = (Fo2 + 2Fc2)/3 |
| 3351 reflections | (Δ/σ)max < 0.001 |
| 181 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| 0 constraints |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.76739 (8) | 0.42437 (6) | 0.51080 (5) | 0.06766 (17) | |
| S1 | 0.35046 (6) | 0.36496 (4) | 1.10956 (4) | 0.04799 (14) | |
| O1 | 0.38199 (19) | 0.05467 (12) | 0.74925 (12) | 0.0523 (3) | |
| O2 | 0.0551 (2) | −0.00809 (15) | 1.36092 (13) | 0.0633 (4) | |
| O3 | 0.23484 (18) | −0.21076 (12) | 0.90512 (12) | 0.0521 (3) | |
| N1 | 0.40933 (18) | 0.27749 (13) | 0.88324 (12) | 0.0393 (3) | |
| H1A | 0.4464 | 0.3739 | 0.8901 | 0.047* | |
| N2 | 0.29315 (17) | 0.07994 (13) | 0.97717 (12) | 0.0379 (3) | |
| H2A | 0.3046 | 0.0287 | 0.9073 | 0.045* | |
| C1 | 0.5613 (3) | 0.2829 (2) | 0.45811 (17) | 0.0549 (4) | |
| H1B | 0.4647 | 0.3319 | 0.4332 | 0.066* | |
| H1C | 0.5743 | 0.2142 | 0.3851 | 0.066* | |
| C2 | 0.5121 (3) | 0.19342 (19) | 0.55845 (15) | 0.0466 (4) | |
| H2B | 0.6092 | 0.1445 | 0.5826 | 0.056* | |
| H2C | 0.4052 | 0.1144 | 0.5235 | 0.056* | |
| C3 | 0.4770 (3) | 0.28733 (18) | 0.67463 (15) | 0.0457 (4) | |
| H3A | 0.5857 | 0.3630 | 0.7127 | 0.055* | |
| H3B | 0.3837 | 0.3401 | 0.6506 | 0.055* | |
| C4 | 0.4193 (2) | 0.19249 (17) | 0.76973 (15) | 0.0388 (3) | |
| C5 | 0.3481 (2) | 0.22955 (16) | 0.98775 (14) | 0.0353 (3) | |
| C6 | 0.2192 (2) | −0.00946 (16) | 1.06058 (14) | 0.0356 (3) | |
| C7 | 0.1739 (2) | 0.04605 (17) | 1.17392 (15) | 0.0414 (3) | |
| H7A | 0.1919 | 0.1500 | 1.2009 | 0.050* | |
| C8 | 0.1013 (2) | −0.05441 (19) | 1.24712 (15) | 0.0435 (4) | |
| C9 | 0.0757 (2) | −0.20879 (19) | 1.20822 (17) | 0.0475 (4) | |
| H9A | 0.0292 | −0.2752 | 1.2584 | 0.057* | |
| C10 | 0.1191 (2) | −0.26447 (18) | 1.09489 (17) | 0.0463 (4) | |
| H10A | 0.1010 | −0.3686 | 1.0688 | 0.056* | |
| C11 | 0.1893 (2) | −0.16674 (17) | 1.01961 (15) | 0.0394 (3) | |
| C12 | 0.0271 (3) | 0.1408 (2) | 1.38725 (18) | 0.0584 (5) | |
| H12A | −0.0043 | 0.1587 | 1.4693 | 0.088* | |
| H12B | −0.0689 | 0.1522 | 1.3260 | 0.088* | |
| H12C | 0.1354 | 0.2125 | 1.3843 | 0.088* | |
| C13 | 0.1689 (3) | −0.36576 (19) | 0.84650 (18) | 0.0540 (4) | |
| H13A | 0.2096 | −0.3825 | 0.7675 | 0.081* | |
| H13B | 0.0396 | −0.3895 | 0.8329 | 0.081* | |
| H13C | 0.2130 | −0.4296 | 0.8997 | 0.081* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0734 (3) | 0.0600 (3) | 0.0700 (3) | 0.0030 (2) | 0.0293 (3) | 0.0139 (2) |
| S1 | 0.0672 (3) | 0.0281 (2) | 0.0468 (2) | −0.00080 (17) | 0.0255 (2) | 0.00220 (16) |
| O1 | 0.0760 (8) | 0.0283 (6) | 0.0488 (7) | −0.0001 (5) | 0.0206 (6) | 0.0022 (5) |
| O2 | 0.1019 (11) | 0.0522 (7) | 0.0481 (7) | 0.0223 (7) | 0.0333 (7) | 0.0227 (6) |
| O3 | 0.0739 (8) | 0.0282 (5) | 0.0537 (7) | 0.0013 (5) | 0.0262 (6) | 0.0057 (5) |
| N1 | 0.0517 (8) | 0.0240 (6) | 0.0410 (7) | 0.0006 (5) | 0.0160 (6) | 0.0058 (5) |
| N2 | 0.0488 (7) | 0.0259 (6) | 0.0370 (6) | 0.0008 (5) | 0.0123 (5) | 0.0050 (5) |
| C1 | 0.0685 (12) | 0.0546 (11) | 0.0401 (9) | 0.0094 (9) | 0.0141 (8) | 0.0050 (8) |
| C2 | 0.0597 (10) | 0.0363 (8) | 0.0413 (9) | 0.0074 (7) | 0.0120 (7) | 0.0007 (6) |
| C3 | 0.0657 (11) | 0.0325 (8) | 0.0403 (8) | 0.0090 (7) | 0.0179 (7) | 0.0059 (6) |
| C4 | 0.0438 (8) | 0.0312 (7) | 0.0396 (8) | 0.0029 (6) | 0.0103 (6) | 0.0055 (6) |
| C5 | 0.0372 (7) | 0.0290 (7) | 0.0388 (7) | 0.0027 (6) | 0.0092 (6) | 0.0076 (5) |
| C6 | 0.0370 (7) | 0.0299 (7) | 0.0395 (8) | 0.0027 (6) | 0.0060 (6) | 0.0117 (6) |
| C7 | 0.0515 (9) | 0.0320 (7) | 0.0409 (8) | 0.0056 (6) | 0.0094 (7) | 0.0113 (6) |
| C8 | 0.0517 (9) | 0.0422 (8) | 0.0388 (8) | 0.0086 (7) | 0.0097 (7) | 0.0152 (7) |
| C9 | 0.0557 (10) | 0.0405 (8) | 0.0491 (9) | 0.0047 (7) | 0.0120 (8) | 0.0226 (7) |
| C10 | 0.0565 (10) | 0.0293 (7) | 0.0527 (9) | 0.0031 (7) | 0.0114 (8) | 0.0134 (7) |
| C11 | 0.0426 (8) | 0.0313 (7) | 0.0437 (8) | 0.0035 (6) | 0.0089 (6) | 0.0095 (6) |
| C12 | 0.0805 (13) | 0.0503 (10) | 0.0482 (10) | 0.0129 (9) | 0.0235 (9) | 0.0116 (8) |
| C13 | 0.0685 (12) | 0.0324 (8) | 0.0579 (11) | 0.0048 (8) | 0.0158 (9) | 0.0026 (7) |
Geometric parameters (Å, °)
| Cl1—C1 | 1.798 (2) | C3—C4 | 1.507 (2) |
| S1—C5 | 1.6750 (16) | C3—H3A | 0.9700 |
| O1—C4 | 1.2156 (19) | C3—H3B | 0.9700 |
| O2—C8 | 1.370 (2) | C6—C7 | 1.385 (2) |
| O2—C12 | 1.415 (2) | C6—C11 | 1.405 (2) |
| O3—C11 | 1.370 (2) | C7—C8 | 1.390 (2) |
| O3—C13 | 1.4267 (19) | C7—H7A | 0.9300 |
| N1—C4 | 1.3839 (19) | C8—C9 | 1.380 (2) |
| N1—C5 | 1.3905 (19) | C9—C10 | 1.378 (3) |
| N1—H1A | 0.8600 | C9—H9A | 0.9300 |
| N2—C5 | 1.3324 (18) | C10—C11 | 1.384 (2) |
| N2—C6 | 1.4149 (18) | C10—H10A | 0.9300 |
| N2—H2A | 0.8600 | C12—H12A | 0.9600 |
| C1—C2 | 1.508 (2) | C12—H12B | 0.9600 |
| C1—H1B | 0.9700 | C12—H12C | 0.9600 |
| C1—H1C | 0.9700 | C13—H13A | 0.9600 |
| C2—C3 | 1.513 (2) | C13—H13B | 0.9600 |
| C2—H2B | 0.9700 | C13—H13C | 0.9600 |
| C2—H2C | 0.9700 | ||
| C8—O2—C12 | 117.89 (13) | N1—C5—S1 | 116.73 (10) |
| C11—O3—C13 | 117.32 (13) | C7—C6—C11 | 119.81 (13) |
| C4—N1—C5 | 129.36 (12) | C7—C6—N2 | 125.40 (13) |
| C4—N1—H1A | 115.3 | C11—C6—N2 | 114.78 (13) |
| C5—N1—H1A | 115.3 | C6—C7—C8 | 119.69 (14) |
| C5—N2—C6 | 131.35 (13) | C6—C7—H7A | 120.2 |
| C5—N2—H2A | 114.3 | C8—C7—H7A | 120.2 |
| C6—N2—H2A | 114.3 | O2—C8—C9 | 116.42 (14) |
| C2—C1—Cl1 | 112.05 (13) | O2—C8—C7 | 123.06 (15) |
| C2—C1—H1B | 109.2 | C9—C8—C7 | 120.50 (15) |
| Cl1—C1—H1B | 109.2 | C10—C9—C8 | 119.96 (15) |
| C2—C1—H1C | 109.2 | C10—C9—H9A | 120.0 |
| Cl1—C1—H1C | 109.2 | C8—C9—H9A | 120.0 |
| H1B—C1—H1C | 107.9 | C9—C10—C11 | 120.59 (15) |
| C1—C2—C3 | 114.17 (14) | C9—C10—H10A | 119.7 |
| C1—C2—H2B | 108.7 | C11—C10—H10A | 119.7 |
| C3—C2—H2B | 108.7 | O3—C11—C10 | 125.02 (14) |
| C1—C2—H2C | 108.7 | O3—C11—C6 | 115.55 (13) |
| C3—C2—H2C | 108.7 | C10—C11—C6 | 119.43 (15) |
| H2B—C2—H2C | 107.6 | O2—C12—H12A | 109.5 |
| C4—C3—C2 | 112.46 (13) | O2—C12—H12B | 109.5 |
| C4—C3—H3A | 109.1 | H12A—C12—H12B | 109.5 |
| C2—C3—H3A | 109.1 | O2—C12—H12C | 109.5 |
| C4—C3—H3B | 109.1 | H12A—C12—H12C | 109.5 |
| C2—C3—H3B | 109.1 | H12B—C12—H12C | 109.5 |
| H3A—C3—H3B | 107.8 | O3—C13—H13A | 109.5 |
| O1—C4—N1 | 122.66 (14) | O3—C13—H13B | 109.5 |
| O1—C4—C3 | 123.84 (14) | H13A—C13—H13B | 109.5 |
| N1—C4—C3 | 113.49 (13) | O3—C13—H13C | 109.5 |
| N2—C5—N1 | 115.06 (13) | H13A—C13—H13C | 109.5 |
| N2—C5—S1 | 128.21 (12) | H13B—C13—H13C | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2A···O1 | 0.86 | 1.93 | 2.663 (2) | 141 |
| N2—H2A···O3 | 0.86 | 2.15 | 2.5895 (18) | 112 |
| C7—H7A···S1 | 0.93 | 2.51 | 3.1853 (18) | 129 |
| N1—H1A···S1i | 0.86 | 2.58 | 3.4058 (16) | 161 |
| C3—H3A···S1i | 0.97 | 2.83 | 3.5633 (19) | 133 |
| C12—H12A···O2ii | 0.96 | 2.50 | 3.259 (3) | 136 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x, −y, −z+3.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BH2378).
References
- Bruker (2000). SADABS, SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Nardelli, M. (1995). J. Appl. Cryst. 28, 659.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst D65, 148–155. [DOI] [PMC free article] [PubMed]
- Yamin, B. M., Othman, N. E. A., Yusof, M. S. M. & Embong, F. (2011). Acta Cryst. E67, o419. [DOI] [PMC free article] [PubMed]
- Yusof, M. S. M., Embong, N. F., Othman, E. A. & Yamin, B. M. (2011). Acta Cryst. E67, o1849. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036002/bh2378sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036002/bh2378Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811036002/bh2378Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


