Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Sep 14;67(Pt 10):o2609. doi: 10.1107/S1600536811036002

N-(4-Chloro­butano­yl)-N′-(2,5-dimeth­oxy­phen­yl)thio­urea

M Sukeri M Yusof a,*, Norafiqah R Azmi a, Bohari M Yamin b
PMCID: PMC3201256  PMID: 22058755

Abstract

The title mol­ecule, C13H17ClN2O3S, shows an anti and syn disposition of the butanoyl and 2,5-dimethoxyphenyl groups with respect to the thione and is stabilized by intra­molecular N—H⋯O and weak C—H⋯S hydrogen bonds. In the crystal, inter­molecular N—H⋯S hydrogen bonds link the mol­ecules into centrosymmetric dimers. The crystal structure is stabilized by weak C—H⋯O and C—H⋯S contacts.

Related literature

For the structures of related thio­ureas, see: Yamin et al. (2011); Yusof et al. (2011).graphic file with name e-67-o2609-scheme1.jpg

Experimental

Crystal data

  • C13H17ClN2O3S

  • M r = 316.80

  • Triclinic, Inline graphic

  • a = 7.6882 (18) Å

  • b = 9.151 (2) Å

  • c = 10.939 (3) Å

  • α = 98.536 (5)°

  • β = 97.787 (5)°

  • γ = 101.489 (5)°

  • V = 734.9 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.41 mm−1

  • T = 298 K

  • 0.29 × 0.25 × 0.19 mm

Data collection

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.890, T max = 0.926

  • 9303 measured reflections

  • 3351 independent reflections

  • 2928 reflections with I > 2σ(I)

  • R int = 0.018

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.105

  • S = 1.06

  • 3351 reflections

  • 181 parameters

  • H-atom parameters constrained

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.22 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036002/bh2378sup1.cif

e-67-o2609-sup1.cif (21KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036002/bh2378Isup2.hkl

e-67-o2609-Isup2.hkl (164.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811036002/bh2378Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2A⋯O1 0.86 1.93 2.663 (2) 141
C7—H7A⋯S1 0.93 2.51 3.1853 (18) 129
N1—H1A⋯S1i 0.86 2.58 3.4058 (16) 161
C3—H3A⋯S1i 0.97 2.83 3.5633 (19) 133
C12—H12A⋯O2ii 0.96 2.50 3.259 (3) 136

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the Malaysian Government, Universiti Kebangsaan Malaysia, the Faculty of Science and Technology, Universiti Malaysia Terengganu, and the Ministry of Higher Education, Malaysia, for research grants UKM-GUP-NBT-08–27–110 and FRGS 59178.

supplementary crystallographic information

Comment

The title compound (Fig. 1) is analogous to the previously reported N-(4-chlorobutanoyl)-N'-(2-fluorophenyl)thiourea (Yusof et al., 2011) except that the methoxy groups are attached at the 2 and 5 positions of the phenyl ring. The carbonylthiourea fragment C4/O1/N1/C5/S1/N2 and the benzene ring, C6···C11, are each planar with the maximum deviation from the least-squares planes of 0.024 (2) Å for atom C4. The benzene ring and carbonylthiourea moiety form a dihedral angle of 5.67 (6)°, much smaller than angles observed in the previously reported thioureas N-(4-chlorobutanoyl)-N'-(2-fluorophenyl)thiourea [74.78 (19)° and 82.3 (2)° for two independent molecules] and N-(4-chlorobutanoyl)-N'-phenylthiourea [72.98 (12)° and 81.47 (14)° for two independent molecules] (Yusof et al., 2011; Yamin et al., 2011). The bond lengths and angles in the title thiourea are in normal ranges and comparable to those in the analogous compounds. The molecule maintains the trans-cis configuration with respect to the position of the butanoyl and 2,5-dimethoxyphenyl groups against the thiono C=S group bond across their C—N bonds.

The molecule is stabilized by three intramolecular contacts, N—H···O and C—H···S. In the crystal packing, the molecules are linked by N—H···S, C—H···S and C—H···O intermolecular hydrogen bonds (symmetry codes as in Table 1) and form dimers (Fig. 2).

Experimental

A solution of 4-chlorobutanoylisothiocyanate (1.25 g, 6.33 mmol) in 30 ml of acetone was added into a flask containing 30 ml acetone solution of 2,5-dimethoxyaniline (0.82 g, 6.33 mmol). The mixture was refluxed for 1 h. Then, the solution was filtered-off and left to evaporate at room temperature. The colourless solid was obtained after one day of evaporation (yield 74%).

Refinement

H atoms bonded to C atoms were positioned geometrically with C—H = 0.93–0.97 Å and constrained to ride on their parent atoms with Uiso(H)= xUeq(parent atom) where x=1.5 for CH3 group and 1.2 for CH and CH2 groups. Amine H atoms were also placed in idealized positions and refined with N—H bond lengths restrained to 0.86 Å and Uiso(H)= 1.2Ueq(parent N atom).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A packing diagram of the title compound viewed down the b axis. Hydrogen bonds are shown as dashed lines.

Crystal data

C13H17ClN2O3S Z = 2
Mr = 316.80 F(000) = 332
Triclinic, P1 Dx = 1.432 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.6882 (18) Å Cell parameters from 934 reflections
b = 9.151 (2) Å θ = 1.9–27.5°
c = 10.939 (3) Å µ = 0.41 mm1
α = 98.536 (5)° T = 298 K
β = 97.787 (5)° Slab, colourless
γ = 101.489 (5)° 0.29 × 0.25 × 0.19 mm
V = 734.9 (3) Å3

Data collection

Bruker SMART APEX CCD area-detector diffractometer 3351 independent reflections
Radiation source: fine-focus sealed tube 2928 reflections with I > 2/s(I)
graphite Rint = 0.018
Detector resolution: 83.66 pixels mm-1 θmax = 27.5°, θmin = 1.9°
ω scan h = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2000) k = −11→11
Tmin = 0.890, Tmax = 0.926 l = −14→14
9303 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.053P)2 + 0.1878P] where P = (Fo2 + 2Fc2)/3
3351 reflections (Δ/σ)max < 0.001
181 parameters Δρmax = 0.24 e Å3
0 restraints Δρmin = −0.22 e Å3
0 constraints

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.76739 (8) 0.42437 (6) 0.51080 (5) 0.06766 (17)
S1 0.35046 (6) 0.36496 (4) 1.10956 (4) 0.04799 (14)
O1 0.38199 (19) 0.05467 (12) 0.74925 (12) 0.0523 (3)
O2 0.0551 (2) −0.00809 (15) 1.36092 (13) 0.0633 (4)
O3 0.23484 (18) −0.21076 (12) 0.90512 (12) 0.0521 (3)
N1 0.40933 (18) 0.27749 (13) 0.88324 (12) 0.0393 (3)
H1A 0.4464 0.3739 0.8901 0.047*
N2 0.29315 (17) 0.07994 (13) 0.97717 (12) 0.0379 (3)
H2A 0.3046 0.0287 0.9073 0.045*
C1 0.5613 (3) 0.2829 (2) 0.45811 (17) 0.0549 (4)
H1B 0.4647 0.3319 0.4332 0.066*
H1C 0.5743 0.2142 0.3851 0.066*
C2 0.5121 (3) 0.19342 (19) 0.55845 (15) 0.0466 (4)
H2B 0.6092 0.1445 0.5826 0.056*
H2C 0.4052 0.1144 0.5235 0.056*
C3 0.4770 (3) 0.28733 (18) 0.67463 (15) 0.0457 (4)
H3A 0.5857 0.3630 0.7127 0.055*
H3B 0.3837 0.3401 0.6506 0.055*
C4 0.4193 (2) 0.19249 (17) 0.76973 (15) 0.0388 (3)
C5 0.3481 (2) 0.22955 (16) 0.98775 (14) 0.0353 (3)
C6 0.2192 (2) −0.00946 (16) 1.06058 (14) 0.0356 (3)
C7 0.1739 (2) 0.04605 (17) 1.17392 (15) 0.0414 (3)
H7A 0.1919 0.1500 1.2009 0.050*
C8 0.1013 (2) −0.05441 (19) 1.24712 (15) 0.0435 (4)
C9 0.0757 (2) −0.20879 (19) 1.20822 (17) 0.0475 (4)
H9A 0.0292 −0.2752 1.2584 0.057*
C10 0.1191 (2) −0.26447 (18) 1.09489 (17) 0.0463 (4)
H10A 0.1010 −0.3686 1.0688 0.056*
C11 0.1893 (2) −0.16674 (17) 1.01961 (15) 0.0394 (3)
C12 0.0271 (3) 0.1408 (2) 1.38725 (18) 0.0584 (5)
H12A −0.0043 0.1587 1.4693 0.088*
H12B −0.0689 0.1522 1.3260 0.088*
H12C 0.1354 0.2125 1.3843 0.088*
C13 0.1689 (3) −0.36576 (19) 0.84650 (18) 0.0540 (4)
H13A 0.2096 −0.3825 0.7675 0.081*
H13B 0.0396 −0.3895 0.8329 0.081*
H13C 0.2130 −0.4296 0.8997 0.081*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0734 (3) 0.0600 (3) 0.0700 (3) 0.0030 (2) 0.0293 (3) 0.0139 (2)
S1 0.0672 (3) 0.0281 (2) 0.0468 (2) −0.00080 (17) 0.0255 (2) 0.00220 (16)
O1 0.0760 (8) 0.0283 (6) 0.0488 (7) −0.0001 (5) 0.0206 (6) 0.0022 (5)
O2 0.1019 (11) 0.0522 (7) 0.0481 (7) 0.0223 (7) 0.0333 (7) 0.0227 (6)
O3 0.0739 (8) 0.0282 (5) 0.0537 (7) 0.0013 (5) 0.0262 (6) 0.0057 (5)
N1 0.0517 (8) 0.0240 (6) 0.0410 (7) 0.0006 (5) 0.0160 (6) 0.0058 (5)
N2 0.0488 (7) 0.0259 (6) 0.0370 (6) 0.0008 (5) 0.0123 (5) 0.0050 (5)
C1 0.0685 (12) 0.0546 (11) 0.0401 (9) 0.0094 (9) 0.0141 (8) 0.0050 (8)
C2 0.0597 (10) 0.0363 (8) 0.0413 (9) 0.0074 (7) 0.0120 (7) 0.0007 (6)
C3 0.0657 (11) 0.0325 (8) 0.0403 (8) 0.0090 (7) 0.0179 (7) 0.0059 (6)
C4 0.0438 (8) 0.0312 (7) 0.0396 (8) 0.0029 (6) 0.0103 (6) 0.0055 (6)
C5 0.0372 (7) 0.0290 (7) 0.0388 (7) 0.0027 (6) 0.0092 (6) 0.0076 (5)
C6 0.0370 (7) 0.0299 (7) 0.0395 (8) 0.0027 (6) 0.0060 (6) 0.0117 (6)
C7 0.0515 (9) 0.0320 (7) 0.0409 (8) 0.0056 (6) 0.0094 (7) 0.0113 (6)
C8 0.0517 (9) 0.0422 (8) 0.0388 (8) 0.0086 (7) 0.0097 (7) 0.0152 (7)
C9 0.0557 (10) 0.0405 (8) 0.0491 (9) 0.0047 (7) 0.0120 (8) 0.0226 (7)
C10 0.0565 (10) 0.0293 (7) 0.0527 (9) 0.0031 (7) 0.0114 (8) 0.0134 (7)
C11 0.0426 (8) 0.0313 (7) 0.0437 (8) 0.0035 (6) 0.0089 (6) 0.0095 (6)
C12 0.0805 (13) 0.0503 (10) 0.0482 (10) 0.0129 (9) 0.0235 (9) 0.0116 (8)
C13 0.0685 (12) 0.0324 (8) 0.0579 (11) 0.0048 (8) 0.0158 (9) 0.0026 (7)

Geometric parameters (Å, °)

Cl1—C1 1.798 (2) C3—C4 1.507 (2)
S1—C5 1.6750 (16) C3—H3A 0.9700
O1—C4 1.2156 (19) C3—H3B 0.9700
O2—C8 1.370 (2) C6—C7 1.385 (2)
O2—C12 1.415 (2) C6—C11 1.405 (2)
O3—C11 1.370 (2) C7—C8 1.390 (2)
O3—C13 1.4267 (19) C7—H7A 0.9300
N1—C4 1.3839 (19) C8—C9 1.380 (2)
N1—C5 1.3905 (19) C9—C10 1.378 (3)
N1—H1A 0.8600 C9—H9A 0.9300
N2—C5 1.3324 (18) C10—C11 1.384 (2)
N2—C6 1.4149 (18) C10—H10A 0.9300
N2—H2A 0.8600 C12—H12A 0.9600
C1—C2 1.508 (2) C12—H12B 0.9600
C1—H1B 0.9700 C12—H12C 0.9600
C1—H1C 0.9700 C13—H13A 0.9600
C2—C3 1.513 (2) C13—H13B 0.9600
C2—H2B 0.9700 C13—H13C 0.9600
C2—H2C 0.9700
C8—O2—C12 117.89 (13) N1—C5—S1 116.73 (10)
C11—O3—C13 117.32 (13) C7—C6—C11 119.81 (13)
C4—N1—C5 129.36 (12) C7—C6—N2 125.40 (13)
C4—N1—H1A 115.3 C11—C6—N2 114.78 (13)
C5—N1—H1A 115.3 C6—C7—C8 119.69 (14)
C5—N2—C6 131.35 (13) C6—C7—H7A 120.2
C5—N2—H2A 114.3 C8—C7—H7A 120.2
C6—N2—H2A 114.3 O2—C8—C9 116.42 (14)
C2—C1—Cl1 112.05 (13) O2—C8—C7 123.06 (15)
C2—C1—H1B 109.2 C9—C8—C7 120.50 (15)
Cl1—C1—H1B 109.2 C10—C9—C8 119.96 (15)
C2—C1—H1C 109.2 C10—C9—H9A 120.0
Cl1—C1—H1C 109.2 C8—C9—H9A 120.0
H1B—C1—H1C 107.9 C9—C10—C11 120.59 (15)
C1—C2—C3 114.17 (14) C9—C10—H10A 119.7
C1—C2—H2B 108.7 C11—C10—H10A 119.7
C3—C2—H2B 108.7 O3—C11—C10 125.02 (14)
C1—C2—H2C 108.7 O3—C11—C6 115.55 (13)
C3—C2—H2C 108.7 C10—C11—C6 119.43 (15)
H2B—C2—H2C 107.6 O2—C12—H12A 109.5
C4—C3—C2 112.46 (13) O2—C12—H12B 109.5
C4—C3—H3A 109.1 H12A—C12—H12B 109.5
C2—C3—H3A 109.1 O2—C12—H12C 109.5
C4—C3—H3B 109.1 H12A—C12—H12C 109.5
C2—C3—H3B 109.1 H12B—C12—H12C 109.5
H3A—C3—H3B 107.8 O3—C13—H13A 109.5
O1—C4—N1 122.66 (14) O3—C13—H13B 109.5
O1—C4—C3 123.84 (14) H13A—C13—H13B 109.5
N1—C4—C3 113.49 (13) O3—C13—H13C 109.5
N2—C5—N1 115.06 (13) H13A—C13—H13C 109.5
N2—C5—S1 128.21 (12) H13B—C13—H13C 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2A···O1 0.86 1.93 2.663 (2) 141
N2—H2A···O3 0.86 2.15 2.5895 (18) 112
C7—H7A···S1 0.93 2.51 3.1853 (18) 129
N1—H1A···S1i 0.86 2.58 3.4058 (16) 161
C3—H3A···S1i 0.97 2.83 3.5633 (19) 133
C12—H12A···O2ii 0.96 2.50 3.259 (3) 136

Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x, −y, −z+3.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BH2378).

References

  1. Bruker (2000). SADABS, SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Nardelli, M. (1995). J. Appl. Cryst. 28, 659.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Spek, A. L. (2009). Acta Cryst D65, 148–155. [DOI] [PMC free article] [PubMed]
  5. Yamin, B. M., Othman, N. E. A., Yusof, M. S. M. & Embong, F. (2011). Acta Cryst. E67, o419. [DOI] [PMC free article] [PubMed]
  6. Yusof, M. S. M., Embong, N. F., Othman, E. A. & Yamin, B. M. (2011). Acta Cryst. E67, o1849. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036002/bh2378sup1.cif

e-67-o2609-sup1.cif (21KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036002/bh2378Isup2.hkl

e-67-o2609-Isup2.hkl (164.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811036002/bh2378Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES