Abstract
In the title compound C11H13N3OS, the aromatic ring and the dihydropyrazole ring are oriented orthogonally with respect to each other, making a dihedral angle of 89.92 (9)°. An intramolecular O—H⋯S hydrogen bond occurs. In the crystal, weak N—H⋯N and N—H⋯S hydrogen bonds link the molecules into a columnar stack propagating along the b axis.
Related literature
For the biological activity of sulfur–nitrogen ligand compounds, see: Wilder Smith (1964 ▶); Grii & Khare (1976 ▶); French & Blang (1966 ▶); Davis Parke & Co (1957 ▶); Vattum & Rao (1959 ▶); Brockaman et al. (1959 ▶). For the carcinostatics thiosemicarbazone-containing nitrogen heterocycles, see: Freedlander & French (1958 ▶); French & Blang (1965 ▶).
Experimental
Crystal data
C11H13N3OS
M r = 235.31
Monoclinic,
a = 11.6955 (6) Å
b = 7.6889 (4) Å
c = 13.7588 (10) Å
β = 111.978 (7)°
V = 1147.35 (12) Å3
Z = 4
Mo Kα radiation
μ = 0.26 mm−1
T = 298 K
0.39 × 0.41 × 0.43 mm
Data collection
Oxford Diffraction Gemini E CCD diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.541, T max = 1.000
19392 measured reflections
2326 independent reflections
2161 reflections with I > 2σ(I)
R int = 0.069
Refinement
R[F 2 > 2σ(F 2)] = 0.047
wR(F 2) = 0.130
S = 1.07
2326 reflections
157 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.27 e Å−3
Δρmin = −0.35 e Å−3
Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811036658/ds2131sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036658/ds2131Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811036658/ds2131Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1O⋯S1 | 0.93 (3) | 2.35 (3) | 3.1256 (15) | 141 (2) |
| N3—H3A⋯S1i | 0.89 (2) | 2.81 (2) | 3.5827 (17) | 145.9 (19) |
| N3—H3B⋯N1ii | 0.87 (2) | 2.30 (2) | 3.158 (2) | 168 (2) |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors acknowledge the UGC, Bangladesh, for the award of a fellowship to BG and thank the TWAS, Trieste, Italy, for awarding a TWAS–UNESCO Associateship to TGR. They are also grateful to ANPCyT for a grant (PME–2006–01113) and to R. Baggio for his helpful suggestions.
supplementary crystallographic information
Comment
Sulfur-Nitrogen ligand and their metal complexes have been reported as biologically important compounds possessing antiviral (Davis et al., 1957), antibacterial (Vattum & Rao, 1959), antipyretic (Wilder Smith, 1964), fungicidal (Grii & Khare, 1976) and analgesic (Wilder Smith, 1964) activities. It was reported that pyridine-2carboxaldehyde dithiosemicarbazone displays anticancer activity. However, no mechanism of action was proposed (Brockaman et al., 1959). French and co-workers (French & Blang, 1965; Freedlander & French, 1958; French & Blang, 1966) studied the carcinostatics thiosemicarbazones containing nitrogen heterocycles. The present investigation is an attempt to prepare a Schiff base ligand (HL) by the condensation of benzoyl acetone and thiosemicarbazide. During crystallization from ethanol-petroleum ether, the crystals of the title compound appropriate for single crystal X-ray diffraction were obtained.
In the crystal structure, the aromatic ring and the dihydropyrazole ring are oriented orthogonally with respect to each other [angle between these two rings is 89.92 (9) °]. Weak N–H···N (3.158 (2) Å) and N–H···S (3.5827 (17) Å) make the moloecules pack into a columnar stack propagating along b axis (see Figure 3).
Experimental
Thiosemicarbazide purchased from the local market was crystallized from ethanol and dried under vacuum desiccator over silica gel (m.p. 441- 443 K) before use. A hot solution of benzoyl acetone (1.62 g, 10 mmol) in absolute ethanol was mixed with the hot solution of thiosemicarbazide (1.22 g, 10 mmol) in the same solvent. The mixture was refluxed for 6 h on a water bath. After reducing the volume, a white product was filtered off. This product was washed with ethanol for several times and dried in a vacuum desiccator over silica gel (m.p. 449–451 K. Yield 1.95 g (82.9%). Anal. Calc. for C11H13N3OS: C, 56.15; H, 5.57; N, 17.86; S, 13.62%. Found: C, 56.03; H, 5.61; N, 17.82; S, 13.57%. FT—IR (KBr, cm-1) νmax: 3360 (m, OH), 3260 (s, NH), 1642 (m, C=N), 999 (m, N—N). Then the crystals suitable for the crystallographic study were prepared by slow evaporation from a ethanol-petroleum ether (2:1 v/v) solution of the ligand.
Refinement
Methyl groups were idealized (C—H = 0.96 A °) and allowed to ride. In all cases, H-atom displacement parameters were taken as Uiso(H) = 1.5Ueq(C) for methyl groups or 1.2Ueq(C,O,N) otherwise.
Figures
Fig. 1.
: ORTEP (50% probablity) diagram of the title compound.
Fig. 2.
: Packing along a, showing the chain-like subunit formed. Intramolecular hydrogen bonds are displayed in green, and intermolecular hydrogen bonds in purple.
Fig. 3.
: Packing along b, showing the columnar arrangement of subunits. Intramolecular hydrogen bonds are displayed in green, and intermolecular hydrogen bonds in purple.
Crystal data
| C11H13N3OS | F(000) = 496 |
| Mr = 235.31 | Dx = 1.362 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 10287 reflections |
| a = 11.6955 (6) Å | θ = 3.5–73.8° |
| b = 7.6889 (4) Å | µ = 0.26 mm−1 |
| c = 13.7588 (10) Å | T = 298 K |
| β = 111.978 (7)° | Prism, white |
| V = 1147.35 (12) Å3 | 0.43 × 0.41 × 0.39 mm |
| Z = 4 |
Data collection
| Oxford Diffraction Gemini E CCD diffractometer | 2161 reflections with I > 2σ(I) |
| graphite | Rint = 0.069 |
| ω scans, thick slices | θmax = 26.3°, θmin = 1.9° |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | h = −14→14 |
| Tmin = 0.541, Tmax = 1.000 | k = −9→9 |
| 19392 measured reflections | l = −17→16 |
| 2326 independent reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.130 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.0808P)2 + 0.2816P] where P = (Fo2 + 2Fc2)/3 |
| 2326 reflections | (Δ/σ)max < 0.001 |
| 157 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.38340 (12) | 0.44242 (18) | 0.08551 (10) | 0.0382 (3) | |
| O1 | 0.09679 (11) | 0.29274 (18) | 0.04417 (11) | 0.0503 (3) | |
| N3 | 0.47610 (13) | 0.1959 (2) | 0.22717 (13) | 0.0479 (4) | |
| C11 | 0.36034 (14) | 0.1729 (2) | 0.16030 (12) | 0.0370 (3) | |
| C10 | 0.36242 (19) | 0.7124 (2) | −0.00962 (16) | 0.0541 (5) | |
| H10C | 0.4469 | 0.7273 | 0.0363 | 0.081* | |
| H10A | 0.3138 | 0.8058 | 0.0008 | 0.081* | |
| H10B | 0.3568 | 0.7128 | −0.081 | 0.081* | |
| N2 | 0.31423 (12) | 0.29247 (17) | 0.08476 (10) | 0.0392 (3) | |
| H3B | 0.504 (2) | 0.124 (3) | 0.2795 (18) | 0.054 (6)* | |
| H3A | 0.521 (2) | 0.286 (3) | 0.2218 (18) | 0.060 (6)* | |
| H1O | 0.114 (2) | 0.194 (4) | 0.086 (2) | 0.068 (7)* | |
| S1 | 0.27587 (4) | 0.00137 (5) | 0.17302 (3) | 0.04557 (19) | |
| C6 | 0.17249 (13) | 0.1559 (2) | −0.08034 (12) | 0.0379 (3) | |
| C9 | 0.31586 (15) | 0.5446 (2) | 0.01356 (12) | 0.0396 (4) | |
| C7 | 0.18692 (14) | 0.2977 (2) | 0.00036 (13) | 0.0399 (4) | |
| C8 | 0.18774 (17) | 0.4804 (2) | −0.04428 (16) | 0.0489 (4) | |
| H8A | 0.1694 | 0.4756 | −0.1191 | 0.059* | |
| H8B | 0.1278 | 0.5551 | −0.0317 | 0.059* | |
| C1 | 0.07051 (15) | 0.0470 (2) | −0.11386 (13) | 0.0444 (4) | |
| H2 | 0.0119 | 0.0557 | −0.0835 | 0.053* | |
| C3 | 0.1390 (2) | −0.0863 (3) | −0.23965 (14) | 0.0559 (5) | |
| H4 | 0.1277 | −0.1666 | −0.293 | 0.067* | |
| C5 | 0.25740 (16) | 0.1420 (2) | −0.12829 (14) | 0.0476 (4) | |
| H6 | 0.3263 | 0.214 | −0.107 | 0.057* | |
| C2 | 0.05503 (17) | −0.0744 (3) | −0.19207 (14) | 0.0527 (5) | |
| H3 | −0.0128 | −0.1484 | −0.2125 | 0.063* | |
| C4 | 0.2406 (2) | 0.0223 (3) | −0.20755 (17) | 0.0557 (5) | |
| H5 | 0.298 | 0.0149 | −0.2394 | 0.067* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0370 (7) | 0.0349 (7) | 0.0363 (7) | −0.0034 (5) | 0.0064 (5) | 0.0002 (5) |
| O1 | 0.0396 (6) | 0.0545 (8) | 0.0526 (7) | 0.0057 (5) | 0.0122 (5) | −0.0049 (6) |
| N3 | 0.0386 (7) | 0.0435 (8) | 0.0461 (8) | 0.0001 (6) | −0.0018 (6) | 0.0117 (6) |
| C11 | 0.0363 (7) | 0.0343 (7) | 0.0348 (7) | 0.0028 (6) | 0.0068 (6) | −0.0003 (6) |
| C10 | 0.0601 (11) | 0.0424 (9) | 0.0524 (10) | −0.0035 (8) | 0.0127 (9) | 0.0093 (8) |
| N2 | 0.0341 (6) | 0.0336 (7) | 0.0376 (7) | −0.0028 (5) | −0.0007 (5) | 0.0029 (5) |
| S1 | 0.0429 (3) | 0.0374 (3) | 0.0500 (3) | −0.00315 (15) | 0.0100 (2) | 0.00632 (16) |
| C6 | 0.0337 (7) | 0.0356 (7) | 0.0349 (8) | 0.0001 (6) | 0.0021 (6) | 0.0054 (6) |
| C9 | 0.0431 (8) | 0.0352 (7) | 0.0344 (8) | 0.0013 (6) | 0.0077 (6) | −0.0005 (6) |
| C7 | 0.0318 (7) | 0.0365 (8) | 0.0398 (8) | 0.0019 (6) | 0.0002 (6) | 0.0022 (6) |
| C8 | 0.0436 (9) | 0.0357 (8) | 0.0491 (10) | 0.0028 (6) | −0.0036 (8) | 0.0045 (7) |
| C1 | 0.0366 (8) | 0.0482 (9) | 0.0399 (9) | −0.0050 (7) | 0.0046 (6) | 0.0004 (7) |
| C3 | 0.0708 (12) | 0.0495 (10) | 0.0395 (9) | 0.0022 (9) | 0.0116 (8) | −0.0033 (8) |
| C5 | 0.0452 (8) | 0.0446 (9) | 0.0511 (10) | −0.0049 (7) | 0.0161 (7) | 0.0040 (8) |
| C2 | 0.0511 (9) | 0.0516 (10) | 0.0428 (9) | −0.0108 (8) | 0.0031 (7) | −0.0042 (8) |
| C4 | 0.0659 (12) | 0.0559 (11) | 0.0502 (10) | 0.0065 (9) | 0.0273 (10) | 0.0070 (8) |
Geometric parameters (Å, °)
| N1—C9 | 1.279 (2) | C6—C5 | 1.387 (2) |
| N1—N2 | 1.4062 (18) | C6—C7 | 1.520 (2) |
| O1—C7 | 1.397 (2) | C9—C8 | 1.493 (2) |
| O1—H1O | 0.93 (3) | C7—C8 | 1.535 (2) |
| N3—C11 | 1.334 (2) | C8—H8A | 0.97 |
| N3—H3B | 0.87 (2) | C8—H8B | 0.97 |
| N3—H3A | 0.89 (3) | C1—C2 | 1.384 (3) |
| C11—N2 | 1.340 (2) | C1—H2 | 0.93 |
| C11—S1 | 1.6958 (16) | C3—C2 | 1.373 (3) |
| C10—C9 | 1.481 (2) | C3—C4 | 1.382 (3) |
| C10—H10C | 0.96 | C3—H4 | 0.93 |
| C10—H10A | 0.96 | C5—C4 | 1.384 (3) |
| C10—H10B | 0.96 | C5—H6 | 0.93 |
| N2—C7 | 1.5077 (18) | C2—H3 | 0.93 |
| C6—C1 | 1.387 (2) | C4—H5 | 0.93 |
| C9—N1—N2 | 108.12 (12) | N2—C7—C6 | 110.55 (12) |
| C7—O1—H1O | 105.7 (15) | O1—C7—C8 | 108.45 (14) |
| C11—N3—H3B | 117.4 (14) | N2—C7—C8 | 100.40 (12) |
| C11—N3—H3A | 121.5 (15) | C6—C7—C8 | 112.34 (14) |
| H3B—N3—H3A | 121 (2) | C9—C8—C7 | 104.14 (13) |
| N3—C11—N2 | 116.99 (15) | C9—C8—H8A | 110.9 |
| N3—C11—S1 | 120.81 (13) | C7—C8—H8A | 110.9 |
| N2—C11—S1 | 122.18 (11) | C9—C8—H8B | 110.9 |
| C9—C10—H10C | 109.5 | C7—C8—H8B | 110.9 |
| C9—C10—H10A | 109.5 | H8A—C8—H8B | 108.9 |
| H10C—C10—H10A | 109.5 | C2—C1—C6 | 120.76 (17) |
| C9—C10—H10B | 109.5 | C2—C1—H2 | 119.6 |
| H10C—C10—H10B | 109.5 | C6—C1—H2 | 119.6 |
| H10A—C10—H10B | 109.5 | C2—C3—C4 | 119.37 (18) |
| C11—N2—N1 | 119.56 (12) | C2—C3—H4 | 120.3 |
| C11—N2—C7 | 127.61 (13) | C4—C3—H4 | 120.3 |
| N1—N2—C7 | 112.54 (12) | C4—C5—C6 | 120.67 (17) |
| C1—C6—C5 | 118.38 (16) | C4—C5—H6 | 119.7 |
| C1—C6—C7 | 121.50 (15) | C6—C5—H6 | 119.7 |
| C5—C6—C7 | 119.93 (14) | C3—C2—C1 | 120.45 (17) |
| N1—C9—C10 | 122.10 (15) | C3—C2—H3 | 119.8 |
| N1—C9—C8 | 114.56 (15) | C1—C2—H3 | 119.8 |
| C10—C9—C8 | 123.34 (15) | C3—C4—C5 | 120.35 (19) |
| O1—C7—N2 | 110.74 (13) | C3—C4—H5 | 119.8 |
| O1—C7—C6 | 113.58 (13) | C5—C4—H5 | 119.8 |
| N3—C11—N2—N1 | −6.3 (2) | C5—C6—C7—N2 | −53.08 (19) |
| S1—C11—N2—N1 | 172.51 (12) | C1—C6—C7—C8 | −116.66 (17) |
| N3—C11—N2—C7 | −179.61 (16) | C5—C6—C7—C8 | 58.17 (19) |
| S1—C11—N2—C7 | −0.8 (2) | N1—C9—C8—C7 | −4.7 (2) |
| C9—N1—N2—C11 | −173.10 (14) | C10—C9—C8—C7 | 175.24 (16) |
| C9—N1—N2—C7 | 1.16 (18) | O1—C7—C8—C9 | 120.77 (15) |
| N2—N1—C9—C10 | −177.61 (15) | N2—C7—C8—C9 | 4.61 (18) |
| N2—N1—C9—C8 | 2.3 (2) | C6—C7—C8—C9 | −112.86 (15) |
| C11—N2—C7—O1 | 55.5 (2) | C5—C6—C1—C2 | 1.1 (2) |
| N1—N2—C7—O1 | −118.22 (15) | C7—C6—C1—C2 | 175.99 (15) |
| C11—N2—C7—C6 | −71.3 (2) | C1—C6—C5—C4 | −0.1 (3) |
| N1—N2—C7—C6 | 115.00 (14) | C7—C6—C5—C4 | −175.07 (16) |
| C11—N2—C7—C8 | 169.90 (16) | C4—C3—C2—C1 | 1.1 (3) |
| N1—N2—C7—C8 | −3.79 (18) | C6—C1—C2—C3 | −1.6 (3) |
| C1—C6—C7—O1 | 6.9 (2) | C2—C3—C4—C5 | −0.1 (3) |
| C5—C6—C7—O1 | −178.28 (14) | C6—C5—C4—C3 | −0.4 (3) |
| C1—C6—C7—N2 | 132.09 (15) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1O···S1 | 0.93 (3) | 2.35 (3) | 3.1256 (15) | 141 (2) |
| N3—H3A···S1i | 0.89 (2) | 2.81 (2) | 3.5827 (17) | 145.9 (19) |
| N3—H3B···N1ii | 0.87 (2) | 2.30 (2) | 3.158 (2) | 168 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+1, y−1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: DS2131).
References
- Brockaman, R. W., Thomas, J. R., Bell, M. J. & Skipper, H. E. (1959). Cancer Res. 16, 167–170. [PubMed]
- Davis, Parke & Co. (1957). Chem. Abstr. 66, 18720g.
- Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
- Freedlander, B. L. & French, F. A. (1958). Cancer Res. 16, 1286–89. [PubMed]
- French, F. A. & Blang, E. J. (1965). Cancer Res. 25, 1454–58. [PubMed]
- French, F. A. & Blang, E. J. (1966). J. Med. Chem. 9, 585–589. [DOI] [PubMed]
- Grii, S. & Khare, R. K. (1976). J. Antibact. Antifung. Agents Jpn, 4, 11–15.
- Oxford Diffraction (2009). CrysAlis PRO Oxford Diffraction Ltd, Abingdon, England.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
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- Wilder Smith, A. E. (1964). Chem. Abstr. 61, 3118g–?.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811036658/ds2131sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036658/ds2131Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811036658/ds2131Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



