Abstract
There are two independent molecules, A and B, in the asymmetric unit of the title compound, C6H8N2O2S. In the crystal, pairs of intermolecular S⋯O contacts [3.286 (1) Å] link the B molecules into inversion dimers.
Related literature
For applications of the title compound, see: Yamaguchi et al. (1989 ▶). For the synthesis, see: Zhu et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶). For a review of carbonyl–carbonyl interactions, see: Allen et al. (1998 ▶).
Experimental
Crystal data
C6H8N2O2S
M r = 172.20
Triclinic,
a = 7.8400 (16) Å
b = 10.464 (2) Å
c = 10.514 (2) Å
α = 63.84 (3)°
β = 79.62 (3)°
γ = 89.42 (3)°
V = 759.2 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.37 mm−1
T = 293 K
0.30 × 0.20 × 0.10 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.896, T max = 0.964
3018 measured reflections
2795 independent reflections
2092 reflections with I > 2σ(I)
R int = 0.041
3 standard reflections every 200 reflections intensity decay: 1%
Refinement
R[F 2 > 2σ(F 2)] = 0.044
wR(F 2) = 0.125
S = 1.00
2795 reflections
200 parameters
H-atom parameters constrained
Δρmax = 0.22 e Å−3
Δρmin = −0.32 e Å−3
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo,1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811038785/lx2196sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038785/lx2196Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811038785/lx2196Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Acknowledgments
The authors thank the Center of Testing and Analysis, Nanjing University, for support.
supplementary crystallographic information
Comment
The title compound, 8-thia-1,6-diazabicyclo[4.3.0]nonane-7,9-dione, is an important intermediate for a kind of manufacturing agrochemical, especially for Fluthiacet-methyl as a super-effective, wide-spectral and safe herbicide (Yamaguchi et al., 1989). We report herein the crystal structure of the title compound.
The asymmetric unit of the title compound is shown in Fig. 1 and there are two independent unique molecules [labeled A & B]. The bond lengths and angles are within normal ranges (Allen et al., 1987). The crystal packing (Fig. 2) is stabilized by an intermolecular S···O interaction between the sulfur and the O atom of the carbonyl group interpreted as similar to type-II carbonyl–carbonyl interaction (Allen et al., 1998), with S1···O2i distance of 3.286 (1) Å.
Experimental
The title compound was prepared according to reported in literature (Zhu et al., 2011). Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound in ethanol at room temperature for ca. 6 d.
Refinement
All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å and Uiso(H) =1.5Ueq(C).
Figures
Fig. 1.
The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius.
Fig. 2.
A view of the S···O interactions (dotted lines) in the crystal structure of the title compound. [Symmetry codes: (i) - x, - y + 2, - z.]
Crystal data
| C6H8N2O2S | Z = 4 |
| Mr = 172.20 | F(000) = 360 |
| Triclinic, P1 | Dx = 1.507 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.8400 (16) Å | Cell parameters from 25 reflections |
| b = 10.464 (2) Å | θ = 10–13° |
| c = 10.514 (2) Å | µ = 0.37 mm−1 |
| α = 63.84 (3)° | T = 293 K |
| β = 79.62 (3)° | Block, colourless |
| γ = 89.42 (3)° | 0.30 × 0.20 × 0.10 mm |
| V = 759.2 (3) Å3 |
Data collection
| Enraf–Nonius CAD-4 diffractometer | 2092 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.041 |
| graphite | θmax = 25.4°, θmin = 2.2° |
| ω/2θ scans | h = 0→9 |
| Absorption correction: ψ scan (North et al., 1968) | k = −12→12 |
| Tmin = 0.896, Tmax = 0.964 | l = −12→12 |
| 3018 measured reflections | 3 standard reflections every 200 reflections |
| 2795 independent reflections | intensity decay: 1% |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
| wR(F2) = 0.125 | w = 1/[σ2(Fo2) + (0.077P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.00 | (Δ/σ)max < 0.001 |
| 2795 reflections | Δρmax = 0.22 e Å−3 |
| 200 parameters | Δρmin = −0.32 e Å−3 |
| 0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.327 (16) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | −0.09731 (11) | 0.82576 (8) | 0.04086 (8) | 0.0598 (3) | |
| O1 | −0.3185 (3) | 0.5944 (3) | 0.1791 (3) | 0.0737 (7) | |
| O2 | 0.2479 (3) | 0.8734 (2) | −0.0219 (2) | 0.0632 (6) | |
| N1 | −0.0292 (2) | 0.5625 (2) | 0.1507 (2) | 0.0416 (5) | |
| N2 | 0.1318 (3) | 0.6432 (2) | 0.1083 (2) | 0.0411 (5) | |
| C1 | 0.2837 (3) | 0.5721 (3) | 0.0768 (3) | 0.0464 (6) | |
| H1A | 0.3892 | 0.6300 | 0.0591 | 0.056* | |
| H1B | 0.2803 | 0.5604 | −0.0092 | 0.056* | |
| C2 | 0.2842 (4) | 0.4278 (3) | 0.2034 (3) | 0.0547 (7) | |
| H2A | 0.3027 | 0.4404 | 0.2860 | 0.066* | |
| H2B | 0.3789 | 0.3771 | 0.1791 | 0.066* | |
| C3 | 0.1134 (4) | 0.3408 (3) | 0.2418 (3) | 0.0529 (7) | |
| H3A | 0.1002 | 0.3205 | 0.1623 | 0.063* | |
| H3B | 0.1137 | 0.2505 | 0.3261 | 0.063* | |
| C4 | −0.0370 (4) | 0.4199 (3) | 0.2726 (3) | 0.0491 (7) | |
| H4A | −0.1456 | 0.3669 | 0.2878 | 0.059* | |
| H4B | −0.0326 | 0.4290 | 0.3599 | 0.059* | |
| C5 | −0.1691 (3) | 0.6421 (3) | 0.1356 (3) | 0.0497 (7) | |
| C6 | 0.1243 (4) | 0.7859 (3) | 0.0365 (3) | 0.0462 (6) | |
| S2 | 0.16047 (9) | 0.00770 (8) | 0.62686 (8) | 0.0517 (3) | |
| O3 | 0.3930 (3) | −0.1856 (2) | 0.6988 (2) | 0.0625 (6) | |
| O4 | 0.1494 (2) | 0.2796 (2) | 0.5788 (2) | 0.0585 (5) | |
| N3 | 0.4698 (2) | 0.0396 (2) | 0.6615 (2) | 0.0396 (5) | |
| N4 | 0.3934 (3) | 0.1675 (2) | 0.6431 (2) | 0.0379 (5) | |
| C7 | 0.5149 (3) | 0.2948 (3) | 0.5815 (3) | 0.0462 (6) | |
| H7A | 0.4534 | 0.3749 | 0.5837 | 0.055* | |
| H7B | 0.5648 | 0.3187 | 0.4817 | 0.055* | |
| C8 | 0.6568 (4) | 0.2672 (3) | 0.6669 (3) | 0.0567 (8) | |
| H8A | 0.6083 | 0.2567 | 0.7629 | 0.068* | |
| H8B | 0.7430 | 0.3483 | 0.6203 | 0.068* | |
| C9 | 0.7431 (3) | 0.1341 (3) | 0.6786 (3) | 0.0541 (7) | |
| H9A | 0.8298 | 0.1158 | 0.7384 | 0.065* | |
| H9B | 0.8015 | 0.1481 | 0.5833 | 0.065* | |
| C10 | 0.6102 (3) | 0.0070 (3) | 0.7438 (3) | 0.0502 (7) | |
| H10A | 0.6655 | −0.0756 | 0.7418 | 0.060* | |
| H10B | 0.5628 | −0.0153 | 0.8437 | 0.060* | |
| C11 | 0.3614 (3) | −0.0634 (3) | 0.6686 (3) | 0.0433 (6) | |
| C12 | 0.2314 (3) | 0.1752 (3) | 0.6121 (3) | 0.0412 (6) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0698 (5) | 0.0513 (5) | 0.0626 (5) | 0.0262 (4) | −0.0203 (4) | −0.0268 (4) |
| O1 | 0.0382 (12) | 0.0922 (17) | 0.0976 (17) | 0.0078 (11) | −0.0077 (11) | −0.0508 (14) |
| O2 | 0.0749 (14) | 0.0403 (11) | 0.0593 (13) | −0.0102 (10) | 0.0012 (11) | −0.0138 (10) |
| N1 | 0.0357 (11) | 0.0393 (11) | 0.0448 (12) | 0.0011 (9) | −0.0052 (9) | −0.0153 (10) |
| N2 | 0.0369 (11) | 0.0349 (11) | 0.0453 (12) | 0.0006 (9) | −0.0038 (9) | −0.0139 (9) |
| C1 | 0.0375 (14) | 0.0472 (15) | 0.0502 (15) | 0.0045 (11) | 0.0008 (11) | −0.0213 (13) |
| C2 | 0.0508 (17) | 0.0486 (16) | 0.0617 (18) | 0.0155 (13) | −0.0147 (14) | −0.0209 (14) |
| C3 | 0.073 (2) | 0.0344 (14) | 0.0467 (15) | 0.0053 (13) | −0.0151 (14) | −0.0130 (12) |
| C4 | 0.0545 (16) | 0.0431 (15) | 0.0406 (14) | −0.0101 (12) | −0.0044 (12) | −0.0120 (12) |
| C5 | 0.0418 (16) | 0.0638 (18) | 0.0531 (16) | 0.0122 (13) | −0.0109 (13) | −0.0343 (15) |
| C6 | 0.0585 (17) | 0.0418 (15) | 0.0362 (13) | 0.0039 (13) | −0.0048 (12) | −0.0172 (12) |
| S2 | 0.0443 (4) | 0.0511 (4) | 0.0589 (5) | −0.0031 (3) | −0.0175 (3) | −0.0208 (3) |
| O3 | 0.0769 (15) | 0.0407 (11) | 0.0712 (14) | 0.0081 (10) | −0.0188 (11) | −0.0247 (10) |
| O4 | 0.0494 (11) | 0.0536 (12) | 0.0682 (13) | 0.0176 (10) | −0.0212 (10) | −0.0200 (10) |
| N3 | 0.0358 (11) | 0.0354 (11) | 0.0451 (12) | 0.0058 (9) | −0.0080 (9) | −0.0159 (9) |
| N4 | 0.0328 (10) | 0.0335 (11) | 0.0445 (12) | 0.0028 (8) | −0.0076 (9) | −0.0150 (9) |
| C7 | 0.0446 (15) | 0.0356 (13) | 0.0543 (16) | −0.0040 (11) | −0.0011 (12) | −0.0195 (12) |
| C8 | 0.0418 (15) | 0.0667 (19) | 0.0708 (19) | −0.0067 (14) | −0.0050 (14) | −0.0409 (16) |
| C9 | 0.0312 (13) | 0.076 (2) | 0.0632 (18) | 0.0066 (13) | −0.0108 (13) | −0.0377 (16) |
| C10 | 0.0381 (14) | 0.0576 (16) | 0.0520 (16) | 0.0119 (12) | −0.0132 (12) | −0.0204 (14) |
| C11 | 0.0467 (15) | 0.0393 (15) | 0.0413 (14) | 0.0016 (12) | −0.0056 (11) | −0.0167 (11) |
| C12 | 0.0386 (13) | 0.0453 (14) | 0.0359 (13) | 0.0049 (12) | −0.0095 (11) | −0.0138 (11) |
Geometric parameters (Å, °)
| S1—C5 | 1.771 (3) | S2—C12 | 1.776 (3) |
| S1—C6 | 1.780 (3) | S2—C11 | 1.779 (3) |
| O1—C5 | 1.203 (3) | O3—C11 | 1.208 (3) |
| O2—C6 | 1.209 (3) | O4—C12 | 1.208 (3) |
| N1—C5 | 1.360 (3) | N3—C11 | 1.347 (3) |
| N1—N2 | 1.411 (3) | N3—N4 | 1.409 (3) |
| N1—C4 | 1.470 (3) | N3—C10 | 1.467 (3) |
| N2—C6 | 1.351 (3) | N4—C12 | 1.360 (3) |
| N2—C1 | 1.463 (3) | N4—C7 | 1.464 (3) |
| C1—C2 | 1.510 (4) | C7—C8 | 1.501 (4) |
| C1—H1A | 0.9700 | C7—H7A | 0.9700 |
| C1—H1B | 0.9700 | C7—H7B | 0.9700 |
| C2—C3 | 1.514 (4) | C8—C9 | 1.508 (4) |
| C2—H2A | 0.9700 | C8—H8A | 0.9700 |
| C2—H2B | 0.9700 | C8—H8B | 0.9700 |
| C3—C4 | 1.503 (4) | C9—C10 | 1.514 (4) |
| C3—H3A | 0.9700 | C9—H9A | 0.9700 |
| C3—H3B | 0.9700 | C9—H9B | 0.9700 |
| C4—H4A | 0.9700 | C10—H10A | 0.9700 |
| C4—H4B | 0.9700 | C10—H10B | 0.9700 |
| C5—S1—C6 | 91.50 (13) | C12—S2—C11 | 91.50 (12) |
| C5—N1—N2 | 114.0 (2) | C11—N3—N4 | 114.76 (19) |
| C5—N1—C4 | 121.3 (2) | C11—N3—C10 | 122.2 (2) |
| N2—N1—C4 | 114.5 (2) | N4—N3—C10 | 114.6 (2) |
| C6—N2—N1 | 114.8 (2) | C12—N4—N3 | 114.5 (2) |
| C6—N2—C1 | 121.8 (2) | C12—N4—C7 | 121.1 (2) |
| N1—N2—C1 | 115.11 (19) | N3—N4—C7 | 115.35 (19) |
| N2—C1—C2 | 109.5 (2) | N4—C7—C8 | 109.7 (2) |
| N2—C1—H1A | 109.8 | N4—C7—H7A | 109.7 |
| C2—C1—H1A | 109.8 | C8—C7—H7A | 109.7 |
| N2—C1—H1B | 109.8 | N4—C7—H7B | 109.7 |
| C2—C1—H1B | 109.8 | C8—C7—H7B | 109.7 |
| H1A—C1—H1B | 108.2 | H7A—C7—H7B | 108.2 |
| C1—C2—C3 | 110.6 (2) | C7—C8—C9 | 111.1 (2) |
| C1—C2—H2A | 109.5 | C7—C8—H8A | 109.4 |
| C3—C2—H2A | 109.5 | C9—C8—H8A | 109.4 |
| C1—C2—H2B | 109.5 | C7—C8—H8B | 109.4 |
| C3—C2—H2B | 109.5 | C9—C8—H8B | 109.4 |
| H2A—C2—H2B | 108.1 | H8A—C8—H8B | 108.0 |
| C4—C3—C2 | 110.8 (2) | C8—C9—C10 | 110.7 (2) |
| C4—C3—H3A | 109.5 | C8—C9—H9A | 109.5 |
| C2—C3—H3A | 109.5 | C10—C9—H9A | 109.5 |
| C4—C3—H3B | 109.5 | C8—C9—H9B | 109.5 |
| C2—C3—H3B | 109.5 | C10—C9—H9B | 109.5 |
| H3A—C3—H3B | 108.1 | H9A—C9—H9B | 108.1 |
| N1—C4—C3 | 109.9 (2) | N3—C10—C9 | 109.7 (2) |
| N1—C4—H4A | 109.7 | N3—C10—H10A | 109.7 |
| C3—C4—H4A | 109.7 | C9—C10—H10A | 109.7 |
| N1—C4—H4B | 109.7 | N3—C10—H10B | 109.7 |
| C3—C4—H4B | 109.7 | C9—C10—H10B | 109.7 |
| H4A—C4—H4B | 108.2 | H10A—C10—H10B | 108.2 |
| O1—C5—N1 | 125.0 (3) | O3—C11—N3 | 126.2 (3) |
| O1—C5—S1 | 125.5 (2) | O3—C11—S2 | 124.5 (2) |
| N1—C5—S1 | 109.5 (2) | N3—C11—S2 | 109.34 (18) |
| O2—C6—N2 | 125.7 (3) | O4—C12—N4 | 125.5 (2) |
| O2—C6—S1 | 125.1 (2) | O4—C12—S2 | 125.4 (2) |
| N2—C6—S1 | 109.2 (2) | N4—C12—S2 | 109.10 (18) |
| C5—N1—N2—C6 | −11.3 (3) | C11—N3—N4—C12 | −10.1 (3) |
| C4—N1—N2—C6 | −157.2 (2) | C10—N3—N4—C12 | −159.0 (2) |
| C5—N1—N2—C1 | −160.4 (2) | C11—N3—N4—C7 | −157.8 (2) |
| C4—N1—N2—C1 | 53.6 (3) | C10—N3—N4—C7 | 53.3 (3) |
| C6—N2—C1—C2 | 160.1 (2) | C12—N4—C7—C8 | 162.2 (2) |
| N1—N2—C1—C2 | −53.2 (3) | N3—N4—C7—C8 | −52.4 (3) |
| N2—C1—C2—C3 | 54.1 (3) | N4—C7—C8—C9 | 53.6 (3) |
| C1—C2—C3—C4 | −56.3 (3) | C7—C8—C9—C10 | −56.1 (3) |
| C5—N1—C4—C3 | 164.3 (2) | C11—N3—C10—C9 | 161.2 (2) |
| N2—N1—C4—C3 | −52.4 (3) | N4—N3—C10—C9 | −52.4 (3) |
| C2—C3—C4—N1 | 53.8 (3) | C8—C9—C10—N3 | 53.8 (3) |
| N2—N1—C5—O1 | −171.7 (3) | N4—N3—C11—O3 | −171.8 (2) |
| C4—N1—C5—O1 | −28.3 (4) | C10—N3—C11—O3 | −25.6 (4) |
| N2—N1—C5—S1 | 8.8 (3) | N4—N3—C11—S2 | 7.9 (3) |
| C4—N1—C5—S1 | 152.26 (19) | C10—N3—C11—S2 | 154.20 (19) |
| C6—S1—C5—O1 | 176.8 (3) | C12—S2—C11—O3 | 176.4 (2) |
| C6—S1—C5—N1 | −3.76 (19) | C12—S2—C11—N3 | −3.33 (19) |
| N1—N2—C6—O2 | −172.2 (2) | N3—N4—C12—O4 | −172.5 (2) |
| C1—N2—C6—O2 | −25.3 (4) | C7—N4—C12—O4 | −26.9 (4) |
| N1—N2—C6—S1 | 7.8 (3) | N3—N4—C12—S2 | 6.9 (3) |
| C1—N2—C6—S1 | 154.63 (19) | C7—N4—C12—S2 | 152.55 (18) |
| C5—S1—C6—O2 | 177.7 (3) | C11—S2—C12—O4 | 177.4 (2) |
| C5—S1—C6—N2 | −2.26 (19) | C11—S2—C12—N4 | −2.03 (19) |
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LX2196).
References
- Allen, F. H., Baalham, C. A., Lommerse, J. P. M. & Raithby, P. R. (1998). Acta Cryst. B54, 320–329.
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Enraf–Nonius (1994). CAD-4 EXPRESS Enraf–Nonius, Delft, The Netherlands.
- Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
- North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Yamaguchi, M., Suzuki, C., Matsunari, K., Miyazawa, T. & Nakamura, Y. (1989). EP Patent 0312064A2.
- Zhu, H. J., Xi, B. B., Feng, M. L., Wang, K., Li, Y. F., Shi, L. & Chen, C. (2011). CN Patent Appl. CN 201110091918.8.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811038785/lx2196sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038785/lx2196Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811038785/lx2196Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


