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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Sep 30;67(Pt 10):o2710. doi: 10.1107/S1600536811037901

4-(6-Chloro­imidazo[1,2-b]pyridazin-3-yl)benzonitrile

Yiliang Zhao a,*, Clarissa K L Ng a
PMCID: PMC3201438  PMID: 22065465

Abstract

In the title compound, C13H7ClN4, the imidazopyridazine ring system is essentially planar [maximum deviation 0.015 (1) Å]. It is inclined to the benzene ring of the benzonitrile group by 11.31 (2)°. In the crystal, molecules are linked via C—H⋯Cl and C—H⋯N interactions.

Related literature

For related structures, see Kia et al. (2009); Khan et al. (2010); Xue (2010); Zhao et al. (2009).graphic file with name e-67-o2710-scheme1.jpg

Experimental

Crystal data

  • C13H7ClN4

  • M r = 254.68

  • Tetragonal, Inline graphic

  • a = 13.5513 (12) Å

  • c = 24.566 (3) Å

  • V = 4511.3 (7) Å3

  • Z = 16

  • Mo Kα radiation

  • μ = 0.32 mm−1

  • T = 150 K

  • 0.25 × 0.15 × 0.10 mm

Data collection

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2008) T min = 0.659, T max = 0.746

  • 140841 measured reflections

  • 18107 independent reflections

  • 11833 reflections with I > 2σ(I)

  • R int = 0.032

Refinement

  • R[F 2 > 2σ(F 2)] = 0.043

  • wR(F 2) = 0.141

  • S = 1.08

  • 18107 reflections

  • 191 parameters

  • 7 restraints

  • All H-atom parameters refined

  • Δρmax = 0.85 e Å−3

  • Δρmin = −0.34 e Å−3

Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811037901/ng5227sup1.cif

e-67-o2710-sup1.cif (17.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037901/ng5227Isup2.hkl

e-67-o2710-Isup2.hkl (885.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811037901/ng5227Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C2—H2⋯N1i 1.08 (1) 2.60 (1) 3.3502 (7) 126 (1)
C3—H3⋯Cl1ii 1.08 (1) 2.70 (1) 3.7389 (6) 161 (1)
C5—H5⋯N4iii 1.08 (1) 2.31 (1) 3.3341 (7) 157 (1)
C8—H8⋯N4iii 1.08 (1) 2.52 (1) 3.6049 (8) 177 (1)
C12—H12⋯N2 1.08 (1) 2.25 (1) 2.9975 (6) 125 (1)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors would like to thank Professor Dai Hibbs from the Faculty of Pharmacy, the University of Sydney, for his kind and generous support of this research project.

supplementary crystallographic information

Comment

The title compound, C13 H7 Cl1 N4, was newly synthesized, crystallized and analysed at high resolution sin theta/lambda 1.1. The bond lengths are as expected. The crystal packing reveals that in one unit cell, every four molecules stack in parallel position by a number of non-classical hydrogen bonds. Hydrogen atoms are fixed at 1.083 A as determined from neutron diffraction, and the temperature factors were refined isotropically.

Experimental

To a thick wall borosilicate glass vial were added 6-Chloro-3-iodo-imidazo[1,2-b]pyridazine (0.05 g, 1.0 equiv.), 4-cyanophenylboronic acid (0.032 g, 1.2 equiv.), Pd(PPh3)4 (0.02 g, 10 mol%), K2CO3 (0.037 g, 1.5 equiv.), and EtOH/H2O (4 : 1, 5 ml). The vial was sealed with a silicon septum and the reaction mixture was pre-stirred for 1 min. The reaction mixture was subjected to microwave irradiation at 90 °C for 14 min at the maximum power of 300 W with sufficient stirring. The reaction mixture was cooled to room temperature and solvent was removed under reduced pressure. The crude product was purified by flash column chromatography, eluting with ethyl acetate/hexane (1 : 1) to give the titled compound as a bright yellow solid (0.038 g, 83 %).

Figures

Fig. 1.

Fig. 1.

, The ORTEP view of the title compound with 50% probability displacement elipsoids for non-H atoms.

Crystal data

C13H7ClN4 Dx = 1.500 Mg m3
Mr = 254.68 Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/a Cell parameters from 500 reflections
a = 13.5513 (12) Å θ = 1.7–62.3°
c = 24.566 (3) Å µ = 0.32 mm1
V = 4511.3 (7) Å3 T = 150 K
Z = 16 Block, colourless
F(000) = 2080 0.25 × 0.15 × 0.10 mm
none

Data collection

Bruker SMART APEXII CCD diffractometer 18107 independent reflections
Radiation source: fine-focus sealed tube 11833 reflections with I > 2σ(I)
graphite Rint = 0.032
ω scans θmax = 62.3°, θmin = 1.7°
Absorption correction: multi-scan (SAINT; Bruker, 2008) h = −33→32
Tmin = 0.659, Tmax = 0.746 k = −33→31
140841 measured reflections l = −58→60

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141 All H-atom parameters refined
S = 1.08 w = 1/[σ2(Fo2) + (0.0756P)2] where P = (Fo2 + 2Fc2)/3
18107 reflections (Δ/σ)max = 0.001
191 parameters Δρmax = 0.85 e Å3
7 restraints Δρmin = −0.34 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.Reflections -1 11 4, -2 4 0, -5 7 10, 4 4 0, 2 4 2, 1 8 13, -4 8 6, 1 3 16, -2 4 22, -1 10 1, -1 6 1, 0 0 24, -4 6 10, 4 5 11, -2 5 7 were omitted due to bad agreement statistics.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.39217 (3) 0.36640 (3) 0.159032 (17) 0.01678 (5)
C2 0.37908 (3) 0.45664 (3) 0.187490 (19) 0.01942 (6)
C3 0.36436 (3) 0.45225 (3) 0.242477 (19) 0.01919 (6)
C4 0.36372 (3) 0.35883 (3) 0.267513 (16) 0.01652 (5)
C5 0.35942 (3) 0.23262 (3) 0.319699 (16) 0.01807 (5)
C6 0.37353 (3) 0.19353 (3) 0.267716 (15) 0.01514 (5)
C7 0.37986 (3) 0.09040 (3) 0.251063 (15) 0.01514 (5)
C8 0.38792 (3) 0.01863 (3) 0.292379 (18) 0.01890 (6)
C9 0.38734 (4) −0.08101 (3) 0.27984 (2) 0.02124 (7)
C10 0.38037 (3) −0.11125 (3) 0.22543 (2) 0.01965 (6)
C11 0.37593 (3) −0.04085 (3) 0.183904 (18) 0.01980 (6)
C12 0.37476 (3) 0.05927 (3) 0.196657 (16) 0.01772 (5)
C13 0.37580 (4) −0.21460 (3) 0.21251 (2) 0.02413 (8)
N1 0.37014 (5) −0.29780 (4) 0.20267 (3) 0.03142 (10)
N2 0.39085 (2) 0.27773 (2) 0.179828 (13) 0.01557 (4)
N3 0.37627 (2) 0.27594 (2) 0.234420 (13) 0.01445 (4)
N4 0.35305 (3) 0.33273 (3) 0.319431 (15) 0.01907 (5)
Cl1 0.413952 (9) 0.370824 (9) 0.089725 (5) 0.02143 (3)
H2 0.3846 (8) 0.5243 (4) 0.1643 (3) 0.031 (2)*
H3 0.3542 (7) 0.5204 (4) 0.2647 (4) 0.030 (2)*
H5 0.3569 (8) 0.1898 (7) 0.3569 (2) 0.034 (3)*
H8 0.3999 (8) 0.0435 (7) 0.33372 (15) 0.031 (2)*
H9 0.3914 (7) −0.1341 (6) 0.3127 (3) 0.029 (2)*
H11 0.3662 (8) −0.0628 (9) 0.14188 (16) 0.042 (3)*
H12 0.3662 (7) 0.1155 (5) 0.1657 (3) 0.030 (2)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.01593 (12) 0.01674 (12) 0.01767 (13) 0.00052 (9) −0.00065 (9) 0.00152 (9)
C2 0.02065 (14) 0.01551 (12) 0.02209 (15) 0.00112 (10) −0.00169 (11) 0.00123 (10)
C3 0.02072 (14) 0.01484 (12) 0.02199 (15) 0.00197 (10) −0.00191 (11) −0.00164 (10)
C4 0.01706 (12) 0.01544 (11) 0.01706 (12) 0.00196 (9) −0.00169 (9) −0.00230 (9)
C5 0.02051 (14) 0.01867 (13) 0.01504 (11) 0.00221 (10) −0.00118 (10) −0.00095 (9)
C6 0.01548 (11) 0.01474 (11) 0.01520 (11) 0.00104 (8) −0.00108 (8) −0.00048 (8)
C7 0.01486 (11) 0.01468 (11) 0.01587 (11) 0.00048 (8) −0.00133 (8) −0.00043 (8)
C8 0.02312 (15) 0.01589 (12) 0.01768 (13) 0.00058 (10) −0.00269 (11) 0.00081 (10)
C9 0.02647 (18) 0.01571 (13) 0.02155 (15) 0.00072 (11) −0.00397 (13) 0.00104 (11)
C10 0.02066 (14) 0.01475 (12) 0.02353 (16) 0.00046 (10) −0.00355 (12) −0.00161 (11)
C11 0.02297 (16) 0.01711 (13) 0.01932 (14) −0.00005 (11) −0.00236 (11) −0.00292 (10)
C12 0.02068 (14) 0.01622 (12) 0.01625 (12) −0.00001 (10) −0.00164 (10) −0.00097 (9)
C13 0.02702 (19) 0.01604 (14) 0.0293 (2) 0.00087 (12) −0.00495 (16) −0.00242 (13)
N1 0.0399 (3) 0.01696 (15) 0.0374 (3) 0.00031 (15) −0.0067 (2) −0.00451 (15)
N2 0.01569 (10) 0.01588 (10) 0.01514 (9) 0.00048 (7) −0.00012 (7) 0.00018 (7)
N3 0.01422 (9) 0.01436 (9) 0.01476 (9) 0.00097 (7) −0.00081 (7) −0.00084 (7)
N4 0.02264 (13) 0.01842 (12) 0.01614 (11) 0.00297 (9) −0.00162 (9) −0.00302 (9)
Cl1 0.02372 (5) 0.02314 (5) 0.01744 (4) 0.00047 (3) 0.00083 (3) 0.00373 (3)

Geometric parameters (Å, °)

C1—N2 1.3058 (5) C7—C12 1.4033 (5)
C1—C2 1.4197 (6) C7—C8 1.4100 (6)
C1—Cl1 1.7291 (5) C8—C9 1.3849 (6)
C2—C3 1.3668 (7) C8—H8 1.0824 (10)
C2—H2 1.0819 (10) C9—C10 1.4014 (7)
C3—C4 1.4074 (6) C9—H9 1.0824 (10)
C3—H3 1.0816 (10) C10—C11 1.3980 (7)
C4—N4 1.3315 (6) C10—C13 1.4374 (6)
C4—N3 1.3970 (5) C11—C12 1.3925 (6)
C5—N4 1.3593 (6) C11—H11 1.0825 (10)
C5—C6 1.3957 (5) C12—H12 1.0823 (10)
C5—H5 1.0827 (10) C13—N1 1.1557 (7)
C6—N3 1.3847 (5) N2—N3 1.3558 (5)
C6—C7 1.4588 (5)
N2—C1—C2 126.74 (4) C9—C8—C7 120.80 (4)
N2—C1—Cl1 114.80 (3) C9—C8—H8 120.9 (6)
C2—C1—Cl1 118.45 (3) C7—C8—H8 118.2 (6)
C3—C2—C1 117.87 (4) C8—C9—C10 119.84 (4)
C3—C2—H2 124.6 (5) C8—C9—H9 118.8 (6)
C1—C2—H2 117.5 (5) C10—C9—H9 121.4 (6)
C2—C3—C4 118.16 (4) C11—C10—C9 119.96 (4)
C2—C3—H3 118.7 (5) C11—C10—C13 120.14 (4)
C4—C3—H3 123.2 (5) C9—C10—C13 119.89 (4)
N4—C4—N3 110.92 (3) C12—C11—C10 120.08 (4)
N4—C4—C3 131.17 (4) C12—C11—H11 118.7 (7)
N3—C4—C3 117.91 (4) C10—C11—H11 120.9 (7)
N4—C5—C6 112.52 (4) C11—C12—C7 120.44 (4)
N4—C5—H5 122.4 (6) C11—C12—H12 121.9 (5)
C6—C5—H5 125.0 (6) C7—C12—H12 117.6 (5)
N3—C6—C5 103.77 (3) N1—C13—C10 178.50 (7)
N3—C6—C7 127.26 (3) C1—N2—N3 113.92 (3)
C5—C6—C7 128.92 (4) N2—N3—C6 127.06 (3)
C12—C7—C8 118.82 (4) N2—N3—C4 125.38 (3)
C12—C7—C6 123.52 (3) C6—N3—C4 107.54 (3)
C8—C7—C6 117.62 (3) C4—N4—C5 105.24 (3)
N2—C1—C2—C3 0.66 (7) C8—C7—C12—C11 1.11 (6)
Cl1—C1—C2—C3 −178.41 (3) C6—C7—C12—C11 −176.50 (4)
C1—C2—C3—C4 0.41 (6) C11—C10—C13—N1 −112 (3)
C2—C3—C4—N4 178.65 (4) C9—C10—C13—N1 67 (3)
C2—C3—C4—N3 −1.24 (6) C2—C1—N2—N3 −0.74 (6)
N4—C5—C6—N3 0.34 (5) Cl1—C1—N2—N3 178.35 (3)
N4—C5—C6—C7 −177.28 (4) C1—N2—N3—C6 −178.44 (4)
N3—C6—C7—C12 −10.13 (6) C1—N2—N3—C4 −0.23 (5)
C5—C6—C7—C12 166.96 (4) C5—C6—N3—N2 178.38 (3)
N3—C6—C7—C8 172.24 (4) C7—C6—N3—N2 −3.94 (6)
C5—C6—C7—C8 −10.67 (6) C5—C6—N3—C4 −0.09 (4)
C12—C7—C8—C9 −2.26 (6) C7—C6—N3—C4 177.58 (4)
C6—C7—C8—C9 175.48 (4) N4—C4—N3—N2 −178.70 (4)
C7—C8—C9—C10 1.11 (7) C3—C4—N3—N2 1.21 (6)
C8—C9—C10—C11 1.22 (7) N4—C4—N3—C6 −0.19 (4)
C8—C9—C10—C13 −177.53 (5) C3—C4—N3—C6 179.72 (4)
C9—C10—C11—C12 −2.37 (7) N3—C4—N4—C5 0.39 (5)
C13—C10—C11—C12 176.38 (4) C3—C4—N4—C5 −179.51 (4)
C10—C11—C12—C7 1.19 (7) C6—C5—N4—C4 −0.46 (5)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C2—H2···N1i 1.08 (1) 2.60 (1) 3.3502 (7) 126.(1)
C3—H3···Cl1ii 1.08 (1) 2.70 (1) 3.7389 (6) 161.(1)
C5—H5···N4iii 1.08 (1) 2.31 (1) 3.3341 (7) 157.(1)
C8—H8···N4iii 1.08 (1) 2.52 (1) 3.6049 (8) 177.(1)
C12—H12···N2 1.08 (1) 2.25 (1) 2.9975 (6) 125.(1)

Symmetry codes: (i) x, y+1, z; (ii) −y+3/4, x+1/4, z+1/4; (iii) −y+3/4, x−1/4, −z+3/4.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG5227).

References

  1. Bruker (2008). SADABS, APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  3. Khan, F. N., Manivel, P., Prabakaran, K., Hathwar, V. R. & Akkurt, M. (2010). Acta Cryst. E66, o1081. [DOI] [PMC free article] [PubMed]
  4. Kia, R., Fun, H.-K. & Kargar, H. (2009). Acta Cryst. E65, o660–o661. [DOI] [PMC free article] [PubMed]
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
  7. Xue, M. W. (2010). Acta Cryst. E66, o2006. [DOI] [PMC free article] [PubMed]
  8. Zhao, M. M., Li, Y. H., Wu, D. H. & Wan, Q. (2009). Acta Cryst. E65, o1261. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811037901/ng5227sup1.cif

e-67-o2710-sup1.cif (17.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037901/ng5227Isup2.hkl

e-67-o2710-Isup2.hkl (885.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811037901/ng5227Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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