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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Sep 17;67(Pt 10):o2665. doi: 10.1107/S1600536811037135

(2E)-1-(5-Chloro­thio­phen-2-yl)-3-(2,3-dimeth­oxy­phen­yl)prop-2-en-1-one

A N Prabhu a, A Jayarama b, Ravish Sankolli c, T N Guru Row c, V Upadhyaya a,*
PMCID: PMC3201439  PMID: 22058781

Abstract

In the title compound, C15H13ClO3S, the chloro­thio­phene and dimeth­oxy­phenyl groups are linked by a prop-2-en-1-one group. The C=C double bond exhibits an E conformation. The mol­ecule is non-planar, with a dihedral angle of 31.12 (5)° between the chloro­thio­phene and dimeth­oxy­phenyl rings. The meth­oxy group at position 3 is coplanar with the benzene ring to which it is attached, with a C—O—C—C torsion angle of −3.8 (3)°. The meth­oxy group attached at position 2 of the benzene ring is in a (+)synclinal conformation, as indicated by the C—O—C—C torsion angle of −73.6 (2)°. In the crystal, two different C—H⋯O inter­molecular inter­actions generate chains of mol­ecules extending along the b axis.

Related literature

For general background to chalcones and their biological properties, see: Choudary et al. (1999); Tomazela et al. (2000). For a related structure, see: Benmekhbi et al. (2009).graphic file with name e-67-o2665-scheme1.jpg

Experimental

Crystal data

  • C15H13ClO3S

  • M r = 308.76

  • Monoclinic, Inline graphic

  • a = 11.6139 (8) Å

  • b = 8.5605 (5) Å

  • c = 14.4174 (9) Å

  • β = 99.907 (2)°

  • V = 1412.02 (16) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.42 mm−1

  • T = 296 K

  • 0.20 × 0.18 × 0.16 mm

Data collection

  • Bruker SMART APEX CCD detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 1998) T min = 0.920, T max = 0.936

  • 9286 measured reflections

  • 3087 independent reflections

  • 2348 reflections with I > 2σ(I)

  • R int = 0.026

Refinement

  • R[F 2 > 2σ(F 2)] = 0.038

  • wR(F 2) = 0.102

  • S = 1.07

  • 3087 reflections

  • 183 parameters

  • H-atom parameters constrained

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: SMART (Bruker, 1998); cell refinement: SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037135/pv2439sup1.cif

e-67-o2665-sup1.cif (17.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037135/pv2439Isup2.hkl

e-67-o2665-Isup2.hkl (148.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811037135/pv2439Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C2—H2⋯O1i 0.93 2.53 3.209 (2) 130
C15—H15A⋯O2ii 0.96 2.55 3.423 (3) 151

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

ANP is thankful to Manipal Institute of Technology, Manipal University.

supplementary crystallographic information

Comment

Chalcones represent one of the most abundant and ubiquitous group of natural products (Tomazela, et al., 2000). In the past few years, they have been shown to possess interesting biological properties and synthetic intermediates (Choudary, et al., 1999). In the title compound (Fig. 1), the chlorothiophene and dimethoxyphenyl groups are linked by a prop-2-en-1-one group. The chlorothiophene and dimethoxyphenyl rings are non-planar with the dihedral angle 31.12 (5)°. The torsion angle C15–O3–C12–C11 is 3.7 (3)° indicating that the O3 methoxy group is coplanar with the attached benzene ring. The other methoxy group at O2 is in a + synclinal conformation as indicated by the torsion angle 73.6 (2)° for C14–O2–C13–C12. The C═C double bond exhibits an E conformation (Benmekhbi, et al., 2009). The crystal structure is stabilized by two different C—H···O intermolecular interactions generating chains of molecules along the b-axis (Fig. 2).

Experimental

To synthesizethe the title compound, 2-acetyl-5-chlorothiophene (0.01 mol) and 2,3-dimethoxybenzaldehyde (0.01 mol) were dissolved in methanol (60 ml). Sodium hydroxide (5 ml, 20%) was then added drop wise to the solution, and it was stirred for 2 h. The contents of the flask were poured into ice-cold water, and the resulting crude solid was collected by filtration. The compound was dried and re-crystallized twice from acetone.

Refinement

The H atoms were placed at calculated positions in the riding model approximation with C—H = 0.93 and 0.96 Å, for aryl and methyl H-atoms, respectively, with Uiso(H) = 1.2 and 1.5Ueq(C).

Figures

Fig. 1.

Fig. 1.

ORTEP (Farrugia, 1997) view of the title compound, showing 50% probability ellipsoids and the atom numbering scheme.

Fig. 2.

Fig. 2.

A unit cell packing of the title compound showing intermolecular interactions with dotted lines. H-atoms not involved in hydrogen bonding have been excluded for clarity.

Crystal data

C15H13ClO3S F(000) = 640
Mr = 308.76 Dx = 1.452 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3087 reflections
a = 11.6139 (8) Å θ = 1.8–27.0°
b = 8.5605 (5) Å µ = 0.42 mm1
c = 14.4174 (9) Å T = 296 K
β = 99.907 (2)° Block, yellow
V = 1412.02 (16) Å3 0.20 × 0.18 × 0.16 mm
Z = 4

Data collection

Bruker SMART APEX CCD detector diffractometer 3087 independent reflections
Radiation source: fine-focus sealed tube 2348 reflections with I > 2σ(I)
graphite Rint = 0.026
ω scans θmax = 27.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 1998) h = −14→14
Tmin = 0.920, Tmax = 0.936 k = −8→10
9286 measured reflections l = −18→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0494P)2 + 0.1854P] where P = (Fo2 + 2Fc2)/3
3087 reflections (Δ/σ)max = 0.001
183 parameters Δρmax = 0.21 e Å3
0 restraints Δρmin = −0.26 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.22862 (5) 0.40719 (7) 1.17836 (4) 0.06157 (19)
S1 0.33583 (4) 0.57846 (6) 1.03539 (3) 0.04070 (15)
O1 0.46583 (12) 0.75106 (18) 0.91191 (10) 0.0540 (4)
O2 0.80027 (11) 0.99907 (15) 0.81682 (8) 0.0413 (3)
O3 0.97557 (11) 1.20940 (17) 0.83929 (10) 0.0509 (4)
C1 0.33815 (16) 0.5228 (2) 1.14971 (13) 0.0387 (4)
C2 0.43004 (17) 0.5799 (2) 1.21037 (13) 0.0451 (5)
H2 0.4440 0.5608 1.2748 0.054*
C3 0.50212 (16) 0.6722 (2) 1.16311 (13) 0.0427 (5)
H3 0.5697 0.7210 1.1936 0.051*
C4 0.46355 (14) 0.6834 (2) 1.06827 (12) 0.0358 (4)
C5 0.51284 (15) 0.7641 (2) 0.99432 (13) 0.0384 (4)
C6 0.61819 (15) 0.8604 (2) 1.02313 (13) 0.0407 (4)
H6 0.6442 0.8791 1.0868 0.049*
C7 0.67724 (15) 0.9214 (2) 0.96006 (13) 0.0382 (4)
H7 0.6509 0.8949 0.8975 0.046*
C8 0.77860 (15) 1.0250 (2) 0.97828 (12) 0.0357 (4)
C9 0.82092 (16) 1.0873 (2) 1.06805 (13) 0.0431 (5)
H9 0.7857 1.0592 1.1188 0.052*
C10 0.91330 (17) 1.1886 (3) 1.08140 (14) 0.0485 (5)
H10 0.9406 1.2280 1.1413 0.058*
C11 0.96713 (16) 1.2336 (2) 1.00634 (14) 0.0466 (5)
H11 1.0293 1.3036 1.0161 0.056*
C12 0.92801 (15) 1.1742 (2) 0.91742 (13) 0.0396 (4)
C13 0.83426 (15) 1.0682 (2) 0.90333 (12) 0.0347 (4)
C14 0.73927 (19) 1.0981 (3) 0.74504 (15) 0.0540 (6)
H14C 0.6614 1.1159 0.7566 0.081*
H14B 0.7358 1.0488 0.6848 0.081*
H14A 0.7796 1.1960 0.7454 0.081*
C15 1.0673 (2) 1.3220 (3) 0.84993 (18) 0.0660 (7)
H15C 1.0407 1.4174 0.8742 0.099*
H15A 1.0896 1.3416 0.7899 0.099*
H15B 1.1334 1.2829 0.8929 0.099*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0603 (3) 0.0672 (4) 0.0591 (4) −0.0213 (3) 0.0158 (3) 0.0057 (3)
S1 0.0417 (3) 0.0445 (3) 0.0344 (3) −0.00324 (19) 0.00221 (18) 0.0015 (2)
O1 0.0592 (8) 0.0645 (10) 0.0361 (8) −0.0086 (7) 0.0025 (6) 0.0093 (7)
O2 0.0537 (7) 0.0392 (8) 0.0328 (7) 0.0012 (6) 0.0124 (6) −0.0022 (6)
O3 0.0484 (8) 0.0632 (10) 0.0446 (8) −0.0134 (7) 0.0174 (6) 0.0012 (7)
C1 0.0436 (10) 0.0360 (10) 0.0382 (10) −0.0011 (8) 0.0122 (8) 0.0004 (8)
C2 0.0542 (11) 0.0497 (13) 0.0315 (9) −0.0044 (9) 0.0074 (8) −0.0008 (9)
C3 0.0438 (10) 0.0453 (12) 0.0374 (10) −0.0059 (8) 0.0026 (8) −0.0015 (9)
C4 0.0362 (9) 0.0339 (10) 0.0377 (10) 0.0025 (7) 0.0078 (7) −0.0004 (8)
C5 0.0405 (9) 0.0382 (11) 0.0370 (10) 0.0060 (8) 0.0084 (8) 0.0046 (8)
C6 0.0443 (10) 0.0441 (11) 0.0343 (10) −0.0009 (8) 0.0087 (8) 0.0013 (8)
C7 0.0438 (10) 0.0370 (11) 0.0349 (9) 0.0048 (8) 0.0101 (8) 0.0029 (8)
C8 0.0373 (9) 0.0365 (10) 0.0339 (9) 0.0061 (7) 0.0078 (7) 0.0024 (8)
C9 0.0453 (10) 0.0518 (13) 0.0333 (9) 0.0036 (9) 0.0100 (8) 0.0032 (9)
C10 0.0472 (11) 0.0616 (14) 0.0350 (10) 0.0001 (10) 0.0019 (8) −0.0040 (9)
C11 0.0388 (10) 0.0536 (13) 0.0462 (12) −0.0048 (8) 0.0042 (8) −0.0020 (10)
C12 0.0374 (9) 0.0438 (12) 0.0394 (10) 0.0033 (8) 0.0116 (8) 0.0039 (9)
C13 0.0381 (9) 0.0337 (10) 0.0332 (9) 0.0049 (7) 0.0083 (7) −0.0010 (8)
C14 0.0607 (13) 0.0573 (14) 0.0412 (11) 0.0048 (10) 0.0009 (9) 0.0042 (10)
C15 0.0583 (13) 0.0776 (18) 0.0665 (16) −0.0211 (12) 0.0230 (11) 0.0056 (13)

Geometric parameters (Å, °)

Cl1—C1 1.7173 (19) C7—C8 1.461 (3)
S1—C1 1.7115 (19) C7—H7 0.9300
S1—C4 1.7292 (18) C8—C13 1.401 (2)
O1—C5 1.224 (2) C8—C9 1.408 (3)
O2—C13 1.376 (2) C9—C10 1.367 (3)
O2—C14 1.428 (2) C9—H9 0.9300
O3—C12 1.371 (2) C10—C11 1.394 (3)
O3—C15 1.425 (2) C10—H10 0.9300
C1—C2 1.350 (3) C11—C12 1.381 (3)
C2—C3 1.409 (3) C11—H11 0.9300
C2—H2 0.9300 C12—C13 1.405 (3)
C3—C4 1.367 (2) C14—H14C 0.9600
C3—H3 0.9300 C14—H14B 0.9600
C4—C5 1.467 (2) C14—H14A 0.9600
C5—C6 1.474 (3) C15—H15C 0.9600
C6—C7 1.336 (3) C15—H15A 0.9600
C6—H6 0.9300 C15—H15B 0.9600
C1—S1—C4 90.57 (9) C10—C9—C8 120.74 (18)
C13—O2—C14 115.51 (15) C10—C9—H9 119.6
C12—O3—C15 117.37 (17) C8—C9—H9 119.6
C2—C1—S1 113.76 (14) C9—C10—C11 120.79 (18)
C2—C1—Cl1 126.07 (15) C9—C10—H10 119.6
S1—C1—Cl1 120.16 (11) C11—C10—H10 119.6
C1—C2—C3 111.04 (17) C12—C11—C10 119.92 (19)
C1—C2—H2 124.5 C12—C11—H11 120.0
C3—C2—H2 124.5 C10—C11—H11 120.0
C4—C3—C2 113.79 (17) O3—C12—C11 124.53 (17)
C4—C3—H3 123.1 O3—C12—C13 115.79 (16)
C2—C3—H3 123.1 C11—C12—C13 119.67 (17)
C3—C4—C5 131.18 (17) O2—C13—C8 119.14 (16)
C3—C4—S1 110.84 (14) O2—C13—C12 120.23 (16)
C5—C4—S1 117.97 (13) C8—C13—C12 120.53 (17)
O1—C5—C4 119.86 (17) O2—C14—H14C 109.5
O1—C5—C6 122.29 (18) O2—C14—H14B 109.5
C4—C5—C6 117.85 (16) H14C—C14—H14B 109.5
C7—C6—C5 121.68 (17) O2—C14—H14A 109.5
C7—C6—H6 119.2 H14C—C14—H14A 109.5
C5—C6—H6 119.2 H14B—C14—H14A 109.5
C6—C7—C8 127.37 (18) O3—C15—H15C 109.5
C6—C7—H7 116.3 O3—C15—H15A 109.5
C8—C7—H7 116.3 H15C—C15—H15A 109.5
C13—C8—C9 118.32 (17) O3—C15—H15B 109.5
C13—C8—C7 119.08 (16) H15C—C15—H15B 109.5
C9—C8—C7 122.57 (17) H15A—C15—H15B 109.5
C4—S1—C1—C2 0.09 (17) C13—C8—C9—C10 0.6 (3)
C4—S1—C1—Cl1 179.16 (12) C7—C8—C9—C10 −177.48 (18)
S1—C1—C2—C3 −0.1 (2) C8—C9—C10—C11 0.5 (3)
Cl1—C1—C2—C3 −179.14 (15) C9—C10—C11—C12 −0.8 (3)
C1—C2—C3—C4 0.1 (3) C15—O3—C12—C11 −3.8 (3)
C2—C3—C4—C5 −178.76 (19) C15—O3—C12—C13 177.16 (18)
C2—C3—C4—S1 −0.1 (2) C10—C11—C12—O3 −179.22 (18)
C1—S1—C4—C3 −0.02 (15) C10—C11—C12—C13 −0.2 (3)
C1—S1—C4—C5 178.87 (15) C14—O2—C13—C8 109.94 (19)
C3—C4—C5—O1 176.0 (2) C14—O2—C13—C12 −73.6 (2)
S1—C4—C5—O1 −2.6 (2) C9—C8—C13—O2 174.84 (15)
C3—C4—C5—C6 −4.6 (3) C7—C8—C13—O2 −7.0 (2)
S1—C4—C5—C6 176.79 (13) C9—C8—C13—C12 −1.6 (3)
O1—C5—C6—C7 −9.3 (3) C7—C8—C13—C12 176.61 (16)
C4—C5—C6—C7 171.31 (17) O3—C12—C13—O2 4.1 (3)
C5—C6—C7—C8 176.47 (17) C11—C12—C13—O2 −175.02 (16)
C6—C7—C8—C13 175.42 (18) O3—C12—C13—C8 −179.52 (16)
C6—C7—C8—C9 −6.5 (3) C11—C12—C13—C8 1.4 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C2—H2···O1i 0.93 2.53 3.209 (2) 130
C15—H15A···O2ii 0.96 2.55 3.423 (3) 151

Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+2, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2439).

References

  1. Benmekhbi, L., Belhouas, R., Bouacida, S., Mosbah, S. & Bencharif, L. (2009). Acta Cryst. E65, o1472–o1473. [DOI] [PMC free article] [PubMed]
  2. Bruker. (1998). SMART, SAINT-Plus and SADABS Bruker AXS Inc., Madison, Wisconcin, USA.
  3. Choudary, B. M., Lakshmi, K. M., Venkat, R. C. R., Koteswara, R. K. & Figueras, F. (1999). J. Mol. Catal. A, 146, 279–279.
  4. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  5. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Tomazela, D. M., Pupo, M. T., Passador, E. A. P., da Silva, M. F. D. G. F., Vieira, P. C., Fernandes, J. B., Rodrigues, F. E., Oliva, G. & Pirani, J. R. (2000). Phytochemistry, 55, 643–651. [DOI] [PubMed]
  8. Watkin, D. J., Prout, C. K. & Pearce, L. J. (1996). CAMERON Chemical Crystallography Laboratory, Oxford, England.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037135/pv2439sup1.cif

e-67-o2665-sup1.cif (17.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037135/pv2439Isup2.hkl

e-67-o2665-Isup2.hkl (148.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811037135/pv2439Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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