Abstract
In the title compound, C14H15ClO3S, the cyclopenyl ring adopts an envelope conformation. In the crystal, molecules are linked by weak intermolecular C—H⋯O hydrogen bonds into dual chains propagating in [100]. The dual chains arise from pairs of the same or different hydrogen bonds between adjacent molecules.
Related literature
For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For the crystal structures of related compounds, see: Seo et al. (2011a
▶,b
▶).
Experimental
Crystal data
C14H15ClO3S
M r = 298.77
Triclinic,
a = 7.4833 (8) Å
b = 8.7888 (9) Å
c = 10.9061 (10) Å
α = 66.919 (5)°
β = 82.848 (6)°
γ = 82.689 (6)°
V = 652.31 (11) Å3
Z = 2
Mo Kα radiation
μ = 0.45 mm−1
T = 173 K
0.39 × 0.27 × 0.22 mm
Data collection
Bruker SMART APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.844, T max = 0.905
11884 measured reflections
3252 independent reflections
2721 reflections with I > 2σ(I)
R int = 0.046
Refinement
R[F 2 > 2σ(F 2)] = 0.044
wR(F 2) = 0.143
S = 1.05
3252 reflections
173 parameters
H-atom parameters constrained
Δρmax = 0.44 e Å−3
Δρmin = −0.73 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103933X/cv5153sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103933X/cv5153Isup2.hkl
Supplementary material file. DOI: 10.1107/S160053681103933X/cv5153Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C3—H3⋯O3i | 0.95 | 2.51 | 3.420 (2) | 160 |
| C12—H12A⋯O2ii | 0.99 | 2.59 | 3.557 (2) | 167 |
| C13—H13B⋯O3ii | 0.99 | 2.61 | 3.516 (3) | 153 |
Symmetry codes: (i)
; (ii)
.
supplementary crystallographic information
Comment
Recently, many compounds containing a benzofuran moiety have received much attention because of their valuable pharmacological properties such as antibacterial and antifungal, antitumor and antiviral, and antimicrobial activities (Aslam et al., 2009, Galal et al., 2009, Khan et al., 2005). These benzofuran derivatives occur in a wide range of natural products (Akgul & Anil, 2003; Soekamto et al., 2003). As a part of our ongoing study of benzofuran derivatives containing either 3-cyclopentylsulfinyl (Seo et al., 2011a) or 3-cyclopentylsulfonyl (Seo et al., 2011b) substituents, we report herein the crystal structure of the title compound (I).
In (I) (Fig. 1), the benzofuran unit is essentially planar, with a mean deviation of 0.005 (2) Å from the least-squares plane defined by the nine constituent atoms. The cyclopentyl ring is in the envelope form. In the crystal structure (Fig. 2), weak intermolecular C—H···O hydrogen bonds (Table 1) link molecules into dual chains propagated in [100] (Fig. 2).
Experimental
77% 3-Chloroperoxybenzoic acid (560 mg, 2.5 mmol) was added in small portions to a stirred solution of 5-chloro-3-cyclopentylsulfanyl-2-methyl-1-benzofuran (320 mg, 1.2 mmol) in dichloromethane (40 mL) at 273 K. After being stirred at room temperature for 8h, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by column chromatography (hexane–ethyl acetate, 4:1 v/v) to afford the title compound as a colorless solid [yield 70%, m.p. 412–413 K; Rf = 0.46 (hexane–ethyl acetate, 4:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound in acetone at room temperature.
Refinement
All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å for aryl, 1.00 Å for methine, 0.99 Å for methylene and 0.98 Å for methyl H atoms, respectively. Uiso(H) =1.2Ueq(C) for aryl, methine and methylene, and 1.5Ueq(C) for methyl H atoms.
Figures
Fig. 1.
The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius.
Fig. 2.
A view of the C—H···O hydrogen bonds (dotted lines) in the crystal structure of the title compound [symmetry codes: (i) - x, - y + 2, - z + 1; (ii) x + 1, y, z; (iii) x - 1, y, z.] H atoms non-participating in hydrogen-bonding were omitted for clarity.
Crystal data
| C14H15ClO3S | Z = 2 |
| Mr = 298.77 | F(000) = 312 |
| Triclinic, P1 | Dx = 1.521 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.4833 (8) Å | Cell parameters from 5081 reflections |
| b = 8.7888 (9) Å | θ = 2.5–28.2° |
| c = 10.9061 (10) Å | µ = 0.45 mm−1 |
| α = 66.919 (5)° | T = 173 K |
| β = 82.848 (6)° | Block, colourless |
| γ = 82.689 (6)° | 0.39 × 0.27 × 0.22 mm |
| V = 652.31 (11) Å3 |
Data collection
| Bruker SMART APEXII CCD diffractometer | 3252 independent reflections |
| Radiation source: rotating anode | 2721 reflections with I > 2σ(I) |
| graphite multilayer | Rint = 0.046 |
| Detector resolution: 10.0 pixels mm-1 | θmax = 28.4°, θmin = 2.0° |
| φ and ω scans | h = −9→9 |
| Absorption correction: multi-scan (SADABS; Bruker, 2009) | k = −11→11 |
| Tmin = 0.844, Tmax = 0.905 | l = −14→14 |
| 11884 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: difference Fourier map |
| wR(F2) = 0.143 | H-atom parameters constrained |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
| 3252 reflections | (Δ/σ)max = 0.001 |
| 173 parameters | Δρmax = 0.44 e Å−3 |
| 0 restraints | Δρmin = −0.73 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.01806 (6) | 0.70534 (5) | 0.73025 (4) | 0.02070 (15) | |
| Cl1 | 0.22626 (7) | 0.92775 (6) | 0.13290 (4) | 0.03364 (17) | |
| O1 | 0.26706 (18) | 0.34648 (14) | 0.62681 (11) | 0.0261 (3) | |
| O2 | −0.07756 (18) | 0.60437 (16) | 0.85224 (11) | 0.0291 (3) | |
| O3 | −0.08387 (17) | 0.83205 (15) | 0.62857 (11) | 0.0257 (3) | |
| C1 | 0.1369 (2) | 0.5756 (2) | 0.65566 (15) | 0.0210 (3) | |
| C2 | 0.1864 (2) | 0.6199 (2) | 0.51383 (15) | 0.0209 (3) | |
| C3 | 0.1721 (2) | 0.7648 (2) | 0.39920 (15) | 0.0225 (4) | |
| H3 | 0.1194 | 0.8673 | 0.4030 | 0.027* | |
| C4 | 0.2388 (3) | 0.7506 (2) | 0.28003 (16) | 0.0243 (4) | |
| C5 | 0.3159 (3) | 0.6020 (2) | 0.27022 (17) | 0.0276 (4) | |
| H5 | 0.3586 | 0.5994 | 0.1853 | 0.033* | |
| C6 | 0.3301 (3) | 0.4594 (2) | 0.38371 (17) | 0.0274 (4) | |
| H6 | 0.3818 | 0.3568 | 0.3797 | 0.033* | |
| C7 | 0.2654 (2) | 0.4727 (2) | 0.50369 (15) | 0.0221 (4) | |
| C8 | 0.1883 (2) | 0.4117 (2) | 0.71738 (16) | 0.0245 (4) | |
| C9 | 0.1791 (3) | 0.2926 (2) | 0.85921 (17) | 0.0321 (4) | |
| H9A | 0.1229 | 0.3503 | 0.9169 | 0.048* | |
| H9B | 0.3015 | 0.2468 | 0.8848 | 0.048* | |
| H9C | 0.1068 | 0.2023 | 0.8693 | 0.048* | |
| C10 | 0.1818 (2) | 0.8010 (2) | 0.77215 (15) | 0.0232 (4) | |
| H10 | 0.1163 | 0.8755 | 0.8158 | 0.028* | |
| C11 | 0.3143 (3) | 0.6800 (2) | 0.86896 (17) | 0.0295 (4) | |
| H11A | 0.2577 | 0.6388 | 0.9618 | 0.035* | |
| H11B | 0.3568 | 0.5842 | 0.8436 | 0.035* | |
| C12 | 0.4688 (3) | 0.7835 (3) | 0.85509 (18) | 0.0328 (4) | |
| H12A | 0.5859 | 0.7157 | 0.8595 | 0.039* | |
| H12B | 0.4556 | 0.8253 | 0.9281 | 0.039* | |
| C13 | 0.4615 (3) | 0.9290 (2) | 0.71898 (19) | 0.0327 (4) | |
| H13A | 0.4423 | 1.0361 | 0.7310 | 0.039* | |
| H13B | 0.5758 | 0.9276 | 0.6629 | 0.039* | |
| C14 | 0.3028 (3) | 0.9064 (2) | 0.65330 (16) | 0.0278 (4) | |
| H14A | 0.2385 | 1.0147 | 0.6028 | 0.033* | |
| H14B | 0.3446 | 0.8483 | 0.5920 | 0.033* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0169 (3) | 0.0228 (2) | 0.0204 (2) | 0.00049 (18) | −0.00042 (16) | −0.00706 (17) |
| Cl1 | 0.0423 (3) | 0.0320 (3) | 0.0211 (2) | −0.0046 (2) | −0.00045 (19) | −0.00445 (19) |
| O1 | 0.0293 (8) | 0.0185 (6) | 0.0285 (6) | 0.0010 (5) | −0.0056 (5) | −0.0068 (5) |
| O2 | 0.0240 (7) | 0.0365 (7) | 0.0233 (6) | −0.0060 (6) | 0.0040 (5) | −0.0084 (5) |
| O3 | 0.0214 (7) | 0.0259 (6) | 0.0272 (6) | 0.0044 (5) | −0.0051 (5) | −0.0082 (5) |
| C1 | 0.0198 (9) | 0.0212 (8) | 0.0210 (7) | −0.0016 (7) | −0.0013 (6) | −0.0070 (6) |
| C2 | 0.0180 (9) | 0.0215 (8) | 0.0235 (7) | −0.0010 (7) | −0.0017 (6) | −0.0092 (6) |
| C3 | 0.0212 (9) | 0.0217 (8) | 0.0238 (7) | −0.0002 (7) | −0.0019 (6) | −0.0085 (6) |
| C4 | 0.0233 (10) | 0.0263 (8) | 0.0218 (7) | −0.0041 (7) | −0.0018 (6) | −0.0071 (6) |
| C5 | 0.0243 (10) | 0.0352 (10) | 0.0276 (8) | −0.0022 (8) | −0.0002 (7) | −0.0175 (8) |
| C6 | 0.0263 (10) | 0.0258 (8) | 0.0350 (9) | 0.0027 (8) | −0.0045 (7) | −0.0176 (7) |
| C7 | 0.0209 (9) | 0.0193 (7) | 0.0250 (7) | −0.0007 (7) | −0.0041 (6) | −0.0070 (6) |
| C8 | 0.0221 (10) | 0.0233 (8) | 0.0272 (8) | −0.0024 (7) | −0.0039 (7) | −0.0079 (7) |
| C9 | 0.0375 (12) | 0.0222 (8) | 0.0295 (8) | −0.0025 (8) | −0.0084 (8) | −0.0007 (7) |
| C10 | 0.0202 (9) | 0.0247 (8) | 0.0245 (7) | 0.0015 (7) | −0.0009 (6) | −0.0105 (7) |
| C11 | 0.0276 (11) | 0.0326 (9) | 0.0252 (8) | −0.0018 (8) | −0.0059 (7) | −0.0068 (7) |
| C12 | 0.0241 (11) | 0.0447 (11) | 0.0293 (9) | −0.0041 (9) | −0.0041 (7) | −0.0129 (8) |
| C13 | 0.0289 (12) | 0.0274 (9) | 0.0411 (10) | −0.0038 (8) | −0.0058 (8) | −0.0109 (8) |
| C14 | 0.0267 (11) | 0.0265 (8) | 0.0266 (8) | −0.0038 (8) | −0.0033 (7) | −0.0054 (7) |
Geometric parameters (Å, °)
| S1—O2 | 1.4382 (12) | C8—C9 | 1.488 (2) |
| S1—O3 | 1.4415 (11) | C9—H9A | 0.9800 |
| S1—C1 | 1.7441 (16) | C9—H9B | 0.9800 |
| S1—C10 | 1.7664 (18) | C9—H9C | 0.9800 |
| Cl1—C4 | 1.7463 (17) | C10—C14 | 1.529 (2) |
| O1—C8 | 1.365 (2) | C10—C11 | 1.530 (2) |
| O1—C7 | 1.3662 (18) | C10—H10 | 1.0000 |
| C1—C8 | 1.356 (2) | C11—C12 | 1.517 (3) |
| C1—C2 | 1.450 (2) | C11—H11A | 0.9900 |
| C2—C7 | 1.392 (2) | C11—H11B | 0.9900 |
| C2—C3 | 1.395 (2) | C12—C13 | 1.535 (3) |
| C3—C4 | 1.380 (2) | C12—H12A | 0.9900 |
| C3—H3 | 0.9500 | C12—H12B | 0.9900 |
| C4—C5 | 1.397 (3) | C13—C14 | 1.531 (3) |
| C5—C6 | 1.378 (2) | C13—H13A | 0.9900 |
| C5—H5 | 0.9500 | C13—H13B | 0.9900 |
| C6—C7 | 1.381 (2) | C14—H14A | 0.9900 |
| C6—H6 | 0.9500 | C14—H14B | 0.9900 |
| O2—S1—O3 | 118.65 (8) | C8—C9—H9C | 109.5 |
| O2—S1—C1 | 108.48 (8) | H9A—C9—H9C | 109.5 |
| O3—S1—C1 | 106.51 (7) | H9B—C9—H9C | 109.5 |
| O2—S1—C10 | 108.07 (8) | C14—C10—C11 | 104.30 (15) |
| O3—S1—C10 | 108.11 (8) | C14—C10—S1 | 114.73 (12) |
| C1—S1—C10 | 106.39 (8) | C11—C10—S1 | 114.46 (12) |
| C8—O1—C7 | 106.90 (12) | C14—C10—H10 | 107.7 |
| C8—C1—C2 | 107.01 (14) | C11—C10—H10 | 107.7 |
| C8—C1—S1 | 126.67 (12) | S1—C10—H10 | 107.7 |
| C2—C1—S1 | 126.15 (12) | C12—C11—C10 | 103.74 (15) |
| C7—C2—C3 | 120.01 (14) | C12—C11—H11A | 111.0 |
| C7—C2—C1 | 104.43 (14) | C10—C11—H11A | 111.0 |
| C3—C2—C1 | 135.56 (15) | C12—C11—H11B | 111.0 |
| C4—C3—C2 | 116.08 (15) | C10—C11—H11B | 111.0 |
| C4—C3—H3 | 122.0 | H11A—C11—H11B | 109.0 |
| C2—C3—H3 | 122.0 | C11—C12—C13 | 107.18 (15) |
| C3—C4—C5 | 123.68 (16) | C11—C12—H12A | 110.3 |
| C3—C4—Cl1 | 118.36 (13) | C13—C12—H12A | 110.3 |
| C5—C4—Cl1 | 117.96 (13) | C11—C12—H12B | 110.3 |
| C6—C5—C4 | 120.02 (15) | C13—C12—H12B | 110.3 |
| C6—C5—H5 | 120.0 | H12A—C12—H12B | 108.5 |
| C4—C5—H5 | 120.0 | C14—C13—C12 | 106.39 (17) |
| C5—C6—C7 | 116.75 (15) | C14—C13—H13A | 110.5 |
| C5—C6—H6 | 121.6 | C12—C13—H13A | 110.5 |
| C7—C6—H6 | 121.6 | C14—C13—H13B | 110.5 |
| O1—C7—C6 | 125.78 (14) | C12—C13—H13B | 110.5 |
| O1—C7—C2 | 110.78 (13) | H13A—C13—H13B | 108.6 |
| C6—C7—C2 | 123.44 (15) | C10—C14—C13 | 103.38 (14) |
| C1—C8—O1 | 110.88 (14) | C10—C14—H14A | 111.1 |
| C1—C8—C9 | 134.00 (15) | C13—C14—H14A | 111.1 |
| O1—C8—C9 | 115.11 (14) | C10—C14—H14B | 111.1 |
| C8—C9—H9A | 109.5 | C13—C14—H14B | 111.1 |
| C8—C9—H9B | 109.5 | H14A—C14—H14B | 109.1 |
| H9A—C9—H9B | 109.5 | ||
| O2—S1—C1—C8 | −22.22 (19) | C1—C2—C7—O1 | −0.2 (2) |
| O3—S1—C1—C8 | −151.00 (17) | C3—C2—C7—C6 | −1.1 (3) |
| C10—S1—C1—C8 | 93.83 (18) | C1—C2—C7—C6 | 179.06 (17) |
| O2—S1—C1—C2 | 152.39 (16) | C2—C1—C8—O1 | 0.0 (2) |
| O3—S1—C1—C2 | 23.61 (18) | S1—C1—C8—O1 | 175.43 (13) |
| C10—S1—C1—C2 | −91.55 (17) | C2—C1—C8—C9 | 179.0 (2) |
| C8—C1—C2—C7 | 0.1 (2) | S1—C1—C8—C9 | −5.5 (3) |
| S1—C1—C2—C7 | −175.35 (14) | C7—O1—C8—C1 | −0.1 (2) |
| C8—C1—C2—C3 | −179.7 (2) | C7—O1—C8—C9 | −179.37 (15) |
| S1—C1—C2—C3 | 4.8 (3) | O2—S1—C10—C14 | 176.93 (11) |
| C7—C2—C3—C4 | 0.3 (3) | O3—S1—C10—C14 | −53.47 (13) |
| C1—C2—C3—C4 | −179.85 (19) | C1—S1—C10—C14 | 60.60 (13) |
| C2—C3—C4—C5 | 0.5 (3) | O2—S1—C10—C11 | 56.38 (14) |
| C2—C3—C4—Cl1 | −179.62 (13) | O3—S1—C10—C11 | −174.02 (12) |
| C3—C4—C5—C6 | −0.6 (3) | C1—S1—C10—C11 | −59.95 (13) |
| Cl1—C4—C5—C6 | 179.48 (15) | C14—C10—C11—C12 | 37.10 (17) |
| C4—C5—C6—C7 | −0.1 (3) | S1—C10—C11—C12 | 163.27 (12) |
| C8—O1—C7—C6 | −179.05 (19) | C10—C11—C12—C13 | −22.06 (19) |
| C8—O1—C7—C2 | 0.2 (2) | C11—C12—C13—C14 | −1.1 (2) |
| C5—C6—C7—O1 | −179.91 (17) | C11—C10—C14—C13 | −37.65 (17) |
| C5—C6—C7—C2 | 0.9 (3) | S1—C10—C14—C13 | −163.66 (12) |
| C3—C2—C7—O1 | 179.66 (15) | C12—C13—C14—C10 | 23.73 (18) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C3—H3···O3i | 0.95 | 2.51 | 3.420 (2) | 160. |
| C12—H12A···O2ii | 0.99 | 2.59 | 3.557 (2) | 167. |
| C13—H13B···O3ii | 0.99 | 2.61 | 3.516 (3) | 153. |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) x+1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV5153).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103933X/cv5153sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103933X/cv5153Isup2.hkl
Supplementary material file. DOI: 10.1107/S160053681103933X/cv5153Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


