Abstract
In the title molecule, C13H18ClN3O, the piperazine ring has a chair conformation. In the crystal, molecules are linked into chains along [100] by N—H⋯O hydrogen bonds.
Related literature
For applications of carboxamide compounds, see: Arrieta et al. (2007 ▶). For a related structure, see: Li (2011 ▶).
Experimental
Crystal data
C13H18ClN3O
M r = 267.75
Orthorhombic,
a = 9.5546 (19) Å
b = 10.910 (2) Å
c = 26.477 (5) Å
V = 2760.1 (10) Å3
Z = 8
Mo Kα radiation
μ = 0.27 mm−1
T = 293 K
0.25 × 0.22 × 0.21 mm
Data collection
Bruker SMART CCD diffractometer
24955 measured reflections
3167 independent reflections
1720 reflections with I > 2σ(I)
R int = 0.079
Refinement
R[F 2 > 2σ(F 2)] = 0.061
wR(F 2) = 0.187
S = 1.00
3167 reflections
168 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.27 e Å−3
Δρmin = −0.27 e Å−3
Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811035331/lh5326sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811035331/lh5326Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3A⋯O1i | 0.82 (3) | 2.18 (3) | 2.986 (3) | 167 (2) |
Symmetry code: (i)
.
supplementary crystallographic information
Comment
Carboxamide compounds are an important intermediate reagent in organic synthesis (Arrieta et al., 2007). The molecular structure of the title compound is shown in Fig. 1. The piperazine ring (N1/N2/C3-C6) is in a chair conformation. Bond lengths and angles are comparable to those common to a similar structure (Li, 2011).
Experimental
A mixture of 1-ethylpiperazine (0.1 mol), and (4-chlorophenyl)carbamic chloride (0.1 mol) was stirred in refluxing ethanol (20 ml) for 4 h to afford the title compound (0.065 mol, yield 65%). Colourless blocks were obtained by recrystallization of a solution of the title compound in ethanol at room temperature.
Refinement
H atoms boned to C atoms were fixed geometrically and allowed to ride on their attached atoms, with C—H distances = 0.93–0.97 Å and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(Cmethyl). The N—H hydrogen was refined independently with an isotropic displacement parameter.
Figures
Fig. 1.
The molecular structure of the title compound showing 30% probability displacement ellipsoids.
Crystal data
| C13H18ClN3O | F(000) = 1136 |
| Mr = 267.75 | Dx = 1.289 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 1720 reflections |
| a = 9.5546 (19) Å | θ = 3.2–27.2° |
| b = 10.910 (2) Å | µ = 0.27 mm−1 |
| c = 26.477 (5) Å | T = 293 K |
| V = 2760.1 (10) Å3 | Block, colorless |
| Z = 8 | 0.25 × 0.22 × 0.21 mm |
Data collection
| Bruker SMART CCD diffractometer | 1720 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.079 |
| graphite | θmax = 27.5°, θmin = 3.1° |
| φ and ω scans | h = −11→12 |
| 24955 measured reflections | k = −14→14 |
| 3167 independent reflections | l = −34→33 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.061 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.187 | w = 1/[σ2(Fo2) + (0.1045P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.00 | (Δ/σ)max < 0.001 |
| 3167 reflections | Δρmax = 0.27 e Å−3 |
| 168 parameters | Δρmin = −0.27 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.021 (3) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.12528 (9) | 0.54490 (8) | 0.41931 (3) | 0.0847 (4) | |
| O1 | 0.14283 (15) | 0.18919 (18) | 0.21930 (6) | 0.0616 (5) | |
| N3 | 0.3536 (2) | 0.2579 (2) | 0.24861 (7) | 0.0514 (6) | |
| C8 | 0.2986 (2) | 0.3286 (2) | 0.28864 (8) | 0.0458 (6) | |
| N2 | 0.34171 (19) | 0.1241 (2) | 0.18146 (8) | 0.0580 (6) | |
| C13 | 0.3594 (2) | 0.3193 (2) | 0.33612 (9) | 0.0542 (6) | |
| H13A | 0.4350 | 0.2671 | 0.3412 | 0.065* | |
| N1 | 0.4083 (2) | 0.1241 (2) | 0.07662 (7) | 0.0644 (7) | |
| C11 | 0.1940 (3) | 0.4637 (2) | 0.36844 (9) | 0.0567 (7) | |
| C12 | 0.3070 (3) | 0.3881 (3) | 0.37613 (9) | 0.0596 (7) | |
| H12A | 0.3482 | 0.3829 | 0.4079 | 0.072* | |
| C10 | 0.1353 (3) | 0.4758 (3) | 0.32123 (10) | 0.0590 (7) | |
| H10A | 0.0605 | 0.5290 | 0.3163 | 0.071* | |
| C7 | 0.2716 (2) | 0.1909 (2) | 0.21612 (8) | 0.0483 (6) | |
| C9 | 0.1878 (2) | 0.4087 (2) | 0.28136 (9) | 0.0547 (6) | |
| H9A | 0.1486 | 0.4173 | 0.2494 | 0.066* | |
| C6 | 0.4827 (3) | 0.2016 (3) | 0.11215 (10) | 0.0652 (7) | |
| H6A | 0.4382 | 0.2815 | 0.1134 | 0.078* | |
| H6B | 0.5782 | 0.2129 | 0.1006 | 0.078* | |
| C4 | 0.2660 (3) | 0.0469 (3) | 0.14571 (9) | 0.0639 (7) | |
| H4A | 0.1702 | 0.0367 | 0.1571 | 0.077* | |
| H4B | 0.3094 | −0.0334 | 0.1443 | 0.077* | |
| C5 | 0.4841 (2) | 0.1467 (3) | 0.16426 (9) | 0.0612 (7) | |
| H5A | 0.5360 | 0.0703 | 0.1638 | 0.073* | |
| H5B | 0.5305 | 0.2023 | 0.1874 | 0.073* | |
| C3 | 0.2667 (3) | 0.1030 (3) | 0.09430 (10) | 0.0707 (8) | |
| H3B | 0.2187 | 0.0490 | 0.0709 | 0.085* | |
| H3C | 0.2164 | 0.1802 | 0.0952 | 0.085* | |
| C2 | 0.4049 (4) | 0.1795 (4) | 0.02561 (12) | 0.0997 (12) | |
| H2A | 0.3649 | 0.2610 | 0.0280 | 0.120* | |
| H2B | 0.3440 | 0.1308 | 0.0042 | 0.120* | |
| C1 | 0.5445 (4) | 0.1884 (5) | 0.00140 (12) | 0.1227 (16) | |
| H1A | 0.5349 | 0.2248 | −0.0314 | 0.184* | |
| H1B | 0.5840 | 0.1079 | −0.0019 | 0.184* | |
| H1C | 0.6048 | 0.2382 | 0.0219 | 0.184* | |
| H3A | 0.435 (3) | 0.236 (2) | 0.2526 (8) | 0.053 (7)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0886 (6) | 0.0831 (6) | 0.0824 (6) | 0.0078 (4) | 0.0226 (4) | −0.0221 (4) |
| O1 | 0.0337 (8) | 0.0846 (14) | 0.0665 (11) | −0.0008 (8) | 0.0028 (7) | −0.0060 (9) |
| N3 | 0.0335 (10) | 0.0646 (14) | 0.0561 (12) | 0.0059 (9) | −0.0007 (8) | −0.0081 (10) |
| C8 | 0.0382 (11) | 0.0471 (14) | 0.0521 (13) | −0.0021 (10) | 0.0039 (9) | 0.0014 (10) |
| N2 | 0.0406 (10) | 0.0713 (16) | 0.0622 (13) | −0.0072 (10) | 0.0060 (9) | −0.0169 (11) |
| C13 | 0.0484 (13) | 0.0530 (16) | 0.0613 (15) | 0.0056 (11) | −0.0028 (11) | 0.0003 (12) |
| N1 | 0.0520 (12) | 0.0864 (18) | 0.0547 (12) | −0.0125 (12) | −0.0010 (9) | −0.0015 (11) |
| C11 | 0.0547 (14) | 0.0511 (16) | 0.0643 (15) | −0.0002 (12) | 0.0145 (12) | −0.0034 (12) |
| C12 | 0.0600 (15) | 0.0637 (18) | 0.0552 (14) | −0.0045 (13) | 0.0019 (11) | −0.0056 (12) |
| C10 | 0.0504 (14) | 0.0499 (16) | 0.0766 (17) | 0.0083 (11) | 0.0075 (12) | 0.0008 (13) |
| C7 | 0.0386 (12) | 0.0567 (15) | 0.0496 (12) | 0.0009 (11) | 0.0008 (10) | 0.0032 (11) |
| C9 | 0.0488 (13) | 0.0554 (16) | 0.0597 (14) | 0.0032 (12) | 0.0002 (11) | 0.0063 (12) |
| C6 | 0.0466 (13) | 0.075 (2) | 0.0737 (16) | −0.0132 (13) | 0.0069 (12) | −0.0094 (15) |
| C4 | 0.0510 (14) | 0.075 (2) | 0.0658 (15) | −0.0186 (13) | 0.0059 (12) | −0.0164 (13) |
| C5 | 0.0380 (12) | 0.084 (2) | 0.0618 (15) | 0.0002 (12) | −0.0005 (11) | −0.0181 (13) |
| C3 | 0.0469 (14) | 0.096 (2) | 0.0691 (17) | −0.0125 (15) | −0.0036 (12) | −0.0090 (16) |
| C2 | 0.083 (2) | 0.144 (4) | 0.072 (2) | −0.015 (2) | −0.0036 (17) | 0.023 (2) |
| C1 | 0.097 (3) | 0.194 (5) | 0.077 (2) | −0.033 (3) | 0.0140 (19) | 0.021 (2) |
Geometric parameters (Å, °)
| Cl1—C11 | 1.741 (2) | C10—H10A | 0.9300 |
| O1—C7 | 1.233 (3) | C9—H9A | 0.9300 |
| N3—C7 | 1.374 (3) | C6—C5 | 1.504 (4) |
| N3—C8 | 1.413 (3) | C6—H6A | 0.9700 |
| N3—H3A | 0.82 (3) | C6—H6B | 0.9700 |
| C8—C9 | 1.386 (3) | C4—C3 | 1.492 (4) |
| C8—C13 | 1.389 (3) | C4—H4A | 0.9700 |
| N2—C7 | 1.350 (3) | C4—H4B | 0.9700 |
| N2—C5 | 1.456 (3) | C5—H5A | 0.9700 |
| N2—C4 | 1.458 (3) | C5—H5B | 0.9700 |
| C13—C12 | 1.391 (3) | C3—H3B | 0.9700 |
| C13—H13A | 0.9300 | C3—H3C | 0.9700 |
| N1—C3 | 1.450 (3) | C2—C1 | 1.482 (5) |
| N1—C6 | 1.451 (3) | C2—H2A | 0.9700 |
| N1—C2 | 1.480 (4) | C2—H2B | 0.9700 |
| C11—C12 | 1.374 (4) | C1—H1A | 0.9600 |
| C11—C10 | 1.377 (3) | C1—H1B | 0.9600 |
| C12—H12A | 0.9300 | C1—H1C | 0.9600 |
| C10—C9 | 1.379 (3) | ||
| C7—N3—C8 | 123.20 (19) | N1—C6—H6B | 109.3 |
| C7—N3—H3A | 117.5 (17) | C5—C6—H6B | 109.3 |
| C8—N3—H3A | 114.8 (16) | H6A—C6—H6B | 108.0 |
| C9—C8—C13 | 119.4 (2) | N2—C4—C3 | 110.7 (2) |
| C9—C8—N3 | 121.6 (2) | N2—C4—H4A | 109.5 |
| C13—C8—N3 | 118.9 (2) | C3—C4—H4A | 109.5 |
| C7—N2—C5 | 125.8 (2) | N2—C4—H4B | 109.5 |
| C7—N2—C4 | 120.42 (19) | C3—C4—H4B | 109.5 |
| C5—N2—C4 | 111.01 (18) | H4A—C4—H4B | 108.1 |
| C8—C13—C12 | 120.0 (2) | N2—C5—C6 | 110.24 (19) |
| C8—C13—H13A | 120.0 | N2—C5—H5A | 109.6 |
| C12—C13—H13A | 120.0 | C6—C5—H5A | 109.6 |
| C3—N1—C6 | 109.9 (2) | N2—C5—H5B | 109.6 |
| C3—N1—C2 | 109.8 (2) | C6—C5—H5B | 109.6 |
| C6—N1—C2 | 111.4 (2) | H5A—C5—H5B | 108.1 |
| C12—C11—C10 | 120.9 (2) | N1—C3—C4 | 111.3 (2) |
| C12—C11—Cl1 | 119.17 (19) | N1—C3—H3B | 109.4 |
| C10—C11—Cl1 | 120.0 (2) | C4—C3—H3B | 109.4 |
| C11—C12—C13 | 119.6 (2) | N1—C3—H3C | 109.4 |
| C11—C12—H12A | 120.2 | C4—C3—H3C | 109.4 |
| C13—C12—H12A | 120.2 | H3B—C3—H3C | 108.0 |
| C11—C10—C9 | 119.7 (2) | N1—C2—C1 | 113.7 (3) |
| C11—C10—H10A | 120.1 | N1—C2—H2A | 108.8 |
| C9—C10—H10A | 120.1 | C1—C2—H2A | 108.8 |
| O1—C7—N2 | 122.2 (2) | N1—C2—H2B | 108.8 |
| O1—C7—N3 | 122.3 (2) | C1—C2—H2B | 108.8 |
| N2—C7—N3 | 115.43 (19) | H2A—C2—H2B | 107.7 |
| C10—C9—C8 | 120.4 (2) | C2—C1—H1A | 109.5 |
| C10—C9—H9A | 119.8 | C2—C1—H1B | 109.5 |
| C8—C9—H9A | 119.8 | H1A—C1—H1B | 109.5 |
| N1—C6—C5 | 111.5 (2) | C2—C1—H1C | 109.5 |
| N1—C6—H6A | 109.3 | H1A—C1—H1C | 109.5 |
| C5—C6—H6A | 109.3 | H1B—C1—H1C | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3A···O1i | 0.82 (3) | 2.18 (3) | 2.986 (3) | 167 (2) |
Symmetry codes: (i) x+1/2, y, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5326).
References
- Arrieta, A., Otaegui, D., Zubia, A., Cossío, F. P., Díaz-Ortiz, A., Hoz, A., Herrero, A., Prieto, P., Foces-Foces, C., Pizarro, J. L. & Arriortua, M. I. (2007). J. Org. Chem. 72, 4313-4322. [DOI] [PubMed]
- Bruker (1997). SMART and SAINT Bruker AXS, Inc., Madison, Wisconsin, USA.
- Li, Y.-F. (2011). Acta Cryst. E67, o2492. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811035331/lh5326sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811035331/lh5326Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

