Abstract
In the title molecule, C11H10ClN5OS, an intramolecular N—H⋯O hydrogen forms an S(6) ring motif. The dihedral angle between the pyrazole ring and the benzene ring is 3.77 (8)°. In the crystal, molecules are linked by N—H⋯S and N—H⋯O hydrogen bonds into layers parallel to the bc plane.
Related literature
For the biological activity and pharmacological properties of pyrazole derivatives, see: Rai et al. (2008 ▶); Girisha et al. (2010 ▶); Isloor et al. (2009 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C11H10ClN5OS
M r = 295.75
Monoclinic,
a = 25.0899 (17) Å
b = 11.6075 (9) Å
c = 9.0806 (6) Å
β = 99.516 (1)°
V = 2608.2 (3) Å3
Z = 8
Mo Kα radiation
μ = 0.45 mm−1
T = 296 K
0.48 × 0.33 × 0.17 mm
Data collection
Bruker SMART APEXII DUO CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.812, T max = 0.927
22139 measured reflections
3827 independent reflections
3125 reflections with I > 2σ(I)
R int = 0.024
Refinement
R[F 2 > 2σ(F 2)] = 0.038
wR(F 2) = 0.120
S = 1.04
3827 reflections
185 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.36 e Å−3
Δρmin = −0.49 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811038463/lh5337sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038463/lh5337Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811038463/lh5337Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N4—H1N4⋯O1 | 0.914 (18) | 2.114 (19) | 2.7903 (16) | 129.9 (16) |
| N5—H1N5⋯S1i | 0.89 (2) | 2.76 (2) | 3.5239 (13) | 144.5 (16) |
| N5—H2N5⋯O1ii | 0.91 (2) | 2.00 (2) | 2.9124 (15) | 177.0 (19) |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). SA also thanks the Malaysian Government and USM for the Academic Staff Training Scheme (ASTS) award.
supplementary crystallographic information
Comment
Pyrazole derivatives are well established in the literatures as important biologically active heterocyclic compounds (Rai et al., 2008). These derivatives are the subject of many research studies due to their widespread pharmacological properties such as anti-inflammatory (Girisha et al., 2010), antipyretic, antimicrobial (Isloor et al., 2009), and antiviral activities. The widely prescribed anti-inflammatory pyrazole derivatives, celecoxib and deracoxib, are selective COX-2 inhibitors with reduced ulcerogenic side effects. The synthetic route followed for obtaining the title compound involves the diazotization of substituted anilines to give the diazonium salts followed by coupling with ethyl acetoacetate in the presence of sodium acetate to give corresponding oxobutanoate which on further reaction with thiosemicarbazide in acetic acid gave the required thioamides.
The molecular structure is shown in Fig. 1. An intramolecular N4—H1N4···O1 hydrogen bond (Table 1) stabilizes the molecular structure and forms an S(6) ring motif (Bernstein et al., 1995). The dihedral angle between the 4,5-dihydro-1H-pyrazole (N1/N2/C1–C3) ring and the phenyl (C4–C9) ring is 3.77 (8)°. Bond lengths (Allen et al., 1987) and angles are within normal ranges.
The crystal packing is shown in Fig. 2. The molecules are linked by intermolecular N5—H1N5···S1i and N5—H2N5···O1ii hydrogen bonds (Table 1) into layers parallel to bc plane.
Experimental
To a solution of ethyl-2-[(4-chlorophenyl)hydrazono]-3-oxobutanoate (0.01 mol) dissolved in glacial acetic acid (20 ml), a solution of thiosemicarbazide (0.02 mol) in glacial acetic acid (25 ml) was added and the mixture was refluxed for 4 h. It was cooled and allowed to stand overnight. The solid product that separated out was filtered and dried. It was then recrystallized from ethanol. Crystals suitable for X-ray analysis were obtained from 1:2 mixtures of DMF and ethanol by slow evaporation.
Refinement
N-bound H atoms was located from the difference map and refined freely, [N–H = 0.89 (2)–0.912 (18) Å]. The remaining H atoms were positioned geometrically [C–H = 0.93 or 0.96 Å] and refined using a riding model with Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating group model was applied to the methyl group.
Figures
Fig. 1.
The molecular structure of the title compound, showing 30% probability displacement ellipsoids. The dashed line indicates an intramolecular bond.
Fig. 2.
The crystal packing of the title compound. The dashed lines represent hydrogen bonds.
Crystal data
| C11H10ClN5OS | F(000) = 1216 |
| Mr = 295.75 | Dx = 1.506 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 9651 reflections |
| a = 25.0899 (17) Å | θ = 2.9–29.9° |
| b = 11.6075 (9) Å | µ = 0.45 mm−1 |
| c = 9.0806 (6) Å | T = 296 K |
| β = 99.516 (1)° | Block, orange |
| V = 2608.2 (3) Å3 | 0.48 × 0.33 × 0.17 mm |
| Z = 8 |
Data collection
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 3827 independent reflections |
| Radiation source: fine-focus sealed tube | 3125 reflections with I > 2σ(I) |
| graphite | Rint = 0.024 |
| φ and ω scans | θmax = 30.1°, θmin = 1.7° |
| Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −35→35 |
| Tmin = 0.812, Tmax = 0.927 | k = −16→16 |
| 22139 measured reflections | l = −12→12 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0678P)2 + 1.0988P] where P = (Fo2 + 2Fc2)/3 |
| 3827 reflections | (Δ/σ)max = 0.003 |
| 185 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.49 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.247690 (16) | 0.67094 (3) | 0.16327 (4) | 0.04930 (13) | |
| Cl1 | 0.47498 (2) | 1.36700 (4) | 0.93948 (6) | 0.07500 (18) | |
| O1 | 0.29887 (5) | 0.85770 (9) | 0.39231 (11) | 0.0481 (3) | |
| N1 | 0.30587 (5) | 0.65709 (9) | 0.43842 (11) | 0.0376 (2) | |
| N2 | 0.33273 (5) | 0.58737 (10) | 0.55643 (12) | 0.0456 (3) | |
| N3 | 0.37848 (5) | 0.86126 (10) | 0.67837 (13) | 0.0431 (3) | |
| N4 | 0.36803 (5) | 0.96471 (10) | 0.62440 (13) | 0.0424 (3) | |
| N5 | 0.26388 (6) | 0.49214 (11) | 0.34633 (13) | 0.0489 (3) | |
| C1 | 0.35437 (5) | 0.77370 (11) | 0.60545 (14) | 0.0397 (3) | |
| C2 | 0.31655 (5) | 0.77385 (11) | 0.46481 (13) | 0.0358 (2) | |
| C3 | 0.36083 (7) | 0.65570 (12) | 0.65135 (16) | 0.0471 (3) | |
| C4 | 0.39475 (5) | 1.05982 (11) | 0.69841 (14) | 0.0389 (3) | |
| C5 | 0.43223 (6) | 1.04497 (13) | 0.82750 (17) | 0.0504 (3) | |
| H5A | 0.4408 | 0.9714 | 0.8647 | 0.060* | |
| C6 | 0.45677 (7) | 1.14060 (14) | 0.90042 (19) | 0.0557 (4) | |
| H6A | 0.4818 | 1.1317 | 0.9875 | 0.067* | |
| C7 | 0.44409 (6) | 1.24900 (13) | 0.84375 (17) | 0.0479 (3) | |
| C8 | 0.40700 (6) | 1.26442 (13) | 0.71486 (17) | 0.0510 (3) | |
| H8A | 0.3988 | 1.3380 | 0.6774 | 0.061* | |
| C9 | 0.38221 (6) | 1.16883 (12) | 0.64217 (17) | 0.0473 (3) | |
| H9A | 0.3571 | 1.1780 | 0.5554 | 0.057* | |
| C10 | 0.27250 (5) | 0.60195 (11) | 0.32065 (13) | 0.0374 (3) | |
| C11 | 0.39486 (10) | 0.61297 (16) | 0.7902 (2) | 0.0773 (6) | |
| H11A | 0.3845 | 0.5356 | 0.8097 | 0.116* | |
| H11B | 0.3899 | 0.6616 | 0.8724 | 0.116* | |
| H11C | 0.4322 | 0.6141 | 0.7782 | 0.116* | |
| H1N4 | 0.3454 (7) | 0.9766 (17) | 0.536 (2) | 0.052 (5)* | |
| H1N5 | 0.2758 (8) | 0.4615 (18) | 0.435 (2) | 0.060 (5)* | |
| H2N5 | 0.2431 (8) | 0.4515 (19) | 0.272 (2) | 0.064 (6)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0633 (2) | 0.0481 (2) | 0.03108 (17) | 0.00100 (15) | −0.00811 (14) | 0.00135 (12) |
| Cl1 | 0.0730 (3) | 0.0509 (2) | 0.0885 (4) | −0.00312 (19) | −0.0239 (2) | −0.0250 (2) |
| O1 | 0.0625 (6) | 0.0356 (5) | 0.0409 (5) | 0.0050 (4) | −0.0071 (4) | 0.0029 (4) |
| N1 | 0.0460 (6) | 0.0343 (5) | 0.0287 (5) | −0.0019 (4) | −0.0046 (4) | 0.0015 (4) |
| N2 | 0.0584 (7) | 0.0352 (5) | 0.0371 (5) | −0.0016 (5) | −0.0104 (5) | 0.0047 (4) |
| N3 | 0.0486 (6) | 0.0387 (5) | 0.0392 (5) | −0.0032 (5) | −0.0011 (5) | −0.0034 (4) |
| N4 | 0.0485 (6) | 0.0366 (5) | 0.0384 (5) | −0.0032 (4) | −0.0034 (5) | −0.0035 (4) |
| N5 | 0.0674 (8) | 0.0416 (6) | 0.0326 (5) | −0.0111 (6) | −0.0067 (5) | −0.0016 (5) |
| C1 | 0.0455 (7) | 0.0359 (6) | 0.0343 (5) | −0.0020 (5) | −0.0035 (5) | −0.0011 (5) |
| C2 | 0.0411 (6) | 0.0342 (6) | 0.0306 (5) | 0.0010 (5) | 0.0019 (4) | −0.0003 (4) |
| C3 | 0.0566 (8) | 0.0391 (6) | 0.0389 (6) | −0.0021 (6) | −0.0118 (6) | 0.0031 (5) |
| C4 | 0.0398 (6) | 0.0382 (6) | 0.0374 (6) | −0.0020 (5) | 0.0020 (5) | −0.0059 (5) |
| C5 | 0.0521 (8) | 0.0413 (7) | 0.0515 (8) | 0.0038 (6) | −0.0099 (6) | −0.0034 (6) |
| C6 | 0.0529 (8) | 0.0523 (8) | 0.0531 (8) | 0.0040 (7) | −0.0175 (7) | −0.0083 (7) |
| C7 | 0.0438 (7) | 0.0429 (7) | 0.0529 (7) | −0.0011 (5) | −0.0037 (6) | −0.0127 (6) |
| C8 | 0.0552 (8) | 0.0379 (7) | 0.0547 (8) | −0.0012 (6) | −0.0060 (6) | −0.0025 (6) |
| C9 | 0.0518 (8) | 0.0412 (7) | 0.0431 (7) | −0.0022 (6) | −0.0087 (6) | −0.0011 (5) |
| C10 | 0.0414 (6) | 0.0404 (6) | 0.0286 (5) | −0.0022 (5) | 0.0008 (4) | −0.0036 (4) |
| C11 | 0.1033 (15) | 0.0516 (9) | 0.0583 (10) | −0.0039 (9) | −0.0415 (10) | 0.0100 (8) |
Geometric parameters (Å, °)
| S1—C10 | 1.6664 (13) | C1—C2 | 1.4597 (17) |
| Cl1—C7 | 1.7347 (14) | C3—C11 | 1.486 (2) |
| O1—C2 | 1.2169 (16) | C4—C9 | 1.3813 (19) |
| N1—C2 | 1.3945 (16) | C4—C5 | 1.3870 (19) |
| N1—C10 | 1.3995 (15) | C5—C6 | 1.384 (2) |
| N1—N2 | 1.4207 (15) | C5—H5A | 0.9300 |
| N2—C3 | 1.2916 (18) | C6—C7 | 1.377 (2) |
| N3—C1 | 1.3057 (17) | C6—H6A | 0.9300 |
| N3—N4 | 1.3070 (16) | C7—C8 | 1.381 (2) |
| N4—C4 | 1.4039 (16) | C8—C9 | 1.385 (2) |
| N4—H1N4 | 0.912 (18) | C8—H8A | 0.9300 |
| N5—C10 | 1.3200 (18) | C9—H9A | 0.9300 |
| N5—H1N5 | 0.89 (2) | C11—H11A | 0.9600 |
| N5—H2N5 | 0.91 (2) | C11—H11B | 0.9600 |
| C1—C3 | 1.4331 (19) | C11—H11C | 0.9600 |
| C2—N1—C10 | 130.50 (11) | C6—C5—H5A | 120.3 |
| C2—N1—N2 | 111.74 (10) | C4—C5—H5A | 120.3 |
| C10—N1—N2 | 117.72 (10) | C7—C6—C5 | 119.82 (14) |
| C3—N2—N1 | 106.99 (11) | C7—C6—H6A | 120.1 |
| C1—N3—N4 | 118.53 (12) | C5—C6—H6A | 120.1 |
| N3—N4—C4 | 119.51 (11) | C6—C7—C8 | 121.12 (13) |
| N3—N4—H1N4 | 121.7 (12) | C6—C7—Cl1 | 118.55 (11) |
| C4—N4—H1N4 | 118.7 (12) | C8—C7—Cl1 | 120.33 (12) |
| C10—N5—H1N5 | 120.4 (13) | C7—C8—C9 | 119.12 (14) |
| C10—N5—H2N5 | 117.2 (13) | C7—C8—H8A | 120.4 |
| H1N5—N5—H2N5 | 122.2 (19) | C9—C8—H8A | 120.4 |
| N3—C1—C3 | 125.15 (12) | C4—C9—C8 | 120.05 (13) |
| N3—C1—C2 | 128.49 (12) | C4—C9—H9A | 120.0 |
| C3—C1—C2 | 106.35 (11) | C8—C9—H9A | 120.0 |
| O1—C2—N1 | 129.93 (12) | N5—C10—N1 | 113.67 (11) |
| O1—C2—C1 | 126.90 (12) | N5—C10—S1 | 124.52 (10) |
| N1—C2—C1 | 103.17 (10) | N1—C10—S1 | 121.81 (10) |
| N2—C3—C1 | 111.70 (12) | C3—C11—H11A | 109.5 |
| N2—C3—C11 | 122.34 (14) | C3—C11—H11B | 109.5 |
| C1—C3—C11 | 125.96 (13) | H11A—C11—H11B | 109.5 |
| C9—C4—C5 | 120.50 (12) | C3—C11—H11C | 109.5 |
| C9—C4—N4 | 118.80 (12) | H11A—C11—H11C | 109.5 |
| C5—C4—N4 | 120.68 (12) | H11B—C11—H11C | 109.5 |
| C6—C5—C4 | 119.38 (14) | ||
| C2—N1—N2—C3 | −2.16 (17) | C2—C1—C3—C11 | −178.78 (18) |
| C10—N1—N2—C3 | −179.95 (13) | N3—N4—C4—C9 | −178.31 (14) |
| C1—N3—N4—C4 | −178.03 (13) | N3—N4—C4—C5 | 0.3 (2) |
| N4—N3—C1—C3 | −178.84 (15) | C9—C4—C5—C6 | 0.5 (2) |
| N4—N3—C1—C2 | 1.4 (2) | N4—C4—C5—C6 | −178.13 (14) |
| C10—N1—C2—O1 | 1.0 (2) | C4—C5—C6—C7 | −0.5 (3) |
| N2—N1—C2—O1 | −176.43 (14) | C5—C6—C7—C8 | 0.2 (3) |
| C10—N1—C2—C1 | 179.99 (13) | C5—C6—C7—Cl1 | 179.16 (14) |
| N2—N1—C2—C1 | 2.57 (15) | C6—C7—C8—C9 | 0.1 (3) |
| N3—C1—C2—O1 | −3.2 (2) | Cl1—C7—C8—C9 | −178.82 (13) |
| C3—C1—C2—O1 | 177.00 (14) | C5—C4—C9—C8 | −0.2 (2) |
| N3—C1—C2—N1 | 177.80 (14) | N4—C4—C9—C8 | 178.48 (14) |
| C3—C1—C2—N1 | −2.04 (15) | C7—C8—C9—C4 | −0.2 (3) |
| N1—N2—C3—C1 | 0.72 (19) | C2—N1—C10—N5 | −167.44 (14) |
| N1—N2—C3—C11 | −179.63 (18) | N2—N1—C10—N5 | 9.85 (18) |
| N3—C1—C3—N2 | −178.98 (14) | C2—N1—C10—S1 | 13.6 (2) |
| C2—C1—C3—N2 | 0.86 (19) | N2—N1—C10—S1 | −169.10 (10) |
| N3—C1—C3—C11 | 1.4 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N4—H1N4···O1 | 0.914 (18) | 2.114 (19) | 2.7903 (16) | 129.9 (16) |
| N5—H1N5···S1i | 0.89 (2) | 2.76 (2) | 3.5239 (13) | 144.5 (16) |
| N5—H2N5···O1ii | 0.91 (2) | 2.00 (2) | 2.9124 (15) | 177.0 (19) |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x+1/2, y−1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5337).
References
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- Bruker (2009). SADABS, APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811038463/lh5337sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038463/lh5337Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811038463/lh5337Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


