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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Sep 17;67(Pt 10):m1396. doi: 10.1107/S1600536811037160

[1-(1H-Imidazo[4,5-f][1,10]phenanthro­lin-2-yl)naphthalen-2-ol-κ2 N 7,N 8]diiodidomercury(II)

Tian-Le Li a,*
PMCID: PMC3201534  PMID: 22065133

Abstract

In the title compound, [HgI2(C23H14N4O)], the HgII atom is four-coordinated by two N atoms from one 1-(1H-imidazo[4,5-f][1,10]phenanthrolin-2-yl)naphthalen-2-ol ligand and by two I atoms in a distorted tetra­hedral environment. An intra­molecular O—H⋯N hydrogen bond stabilizes the mol­ecular conformation and an inter­molecular N—H⋯I inter­action stabilizes the crystal packing.

Related literature

For information about the organic ligand 1-(1H-imidazo[4,5-f][1,10]phenanthrolin-2-yl)naphthalen-2-ol), see: Wang et al. (2010).graphic file with name e-67-m1396-scheme1.jpg

Experimental

Crystal data

  • [HgI2(C23H14N4O)]

  • M r = 816.77

  • Monoclinic, Inline graphic

  • a = 14.4271 (10) Å

  • b = 7.3026 (5) Å

  • c = 21.1337 (15) Å

  • β = 94.472 (1)°

  • V = 2219.8 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 9.74 mm−1

  • T = 293 K

  • 0.17 × 0.14 × 0.12 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.41, T max = 0.64

  • 11586 measured reflections

  • 4351 independent reflections

  • 3217 reflections with I > 2σ(I)

  • R int = 0.031

Refinement

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.057

  • S = 1.01

  • 4351 reflections

  • 284 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.67 e Å−3

  • Δρmin = −0.84 e Å−3

Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037160/bt5643sup1.cif

e-67-m1396-sup1.cif (18.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037160/bt5643Isup2.hkl

e-67-m1396-Isup2.hkl (208.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3A⋯I1i 0.86 3.05 3.896 (4) 167
O1—H1A⋯N4 0.91 (8) 1.77 (8) 2.623 (6) 155 (7)

Symmetry code: (i) Inline graphic.

Acknowledgments

The author thanks Guangdong University of Petrochemical Technology for supporting this work.

supplementary crystallographic information

Comment

The ligand 1-(1H-imidazo[4,5-f][1,10]phenanthrolin-2-yl)naphthalen-2-ol) is a N-donor ligand and has excellent coordinating ability (Wang et al., 2010). In this work, we selected it as an N-donor chelating ligand, generating a new HgII complex.

In the compound, the central HgII atom is four-coordinated by two N atoms from one organic ligand, and two I atoms in a distorted tetrahedral sphere. N-H···I and O-H···N H-bonding interactions stabilize the crystal structure and the molecular conformation.

Experimental

A mixture of HgI2 (0.5 mmol) and 1-(1H-imidazo[4,5-f][1,10]phenanthrolin-2-yl)naphthalen-2-ol) (0.5 mmol) in 8 mL distilled water was heated at 462 K in a Teflon-lined stainless steel autoclave for seven days. The reaction system was then slowly cooled to room temperature. Pale yellow crystals of the title compound suitable for single crystal X-ray diffraction analysis were collected from the final reaction system by filtration, washed several times with distilled water and dried in air at ambient temperature. Yield: 15% based on Hg(II).

Refinement

H atoms bonded to N and C were positioned geometrically (C-H = 0.93 Å) and refined as riding, with Uiso(H)=1.2Ueq(carrier). The H atom bonded to O was freely refined.

Figures

Fig. 1.

Fig. 1.

Perspective view of the title compound, showing the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Crystal data

[HgI2(C23H14N4O)] F(000) = 1496
Mr = 816.77 Dx = 2.444 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4351 reflections
a = 14.4271 (10) Å θ = 1.9–26.0°
b = 7.3026 (5) Å µ = 9.74 mm1
c = 21.1337 (15) Å T = 293 K
β = 94.472 (1)° Block, pale yellow
V = 2219.8 (3) Å3 0.17 × 0.14 × 0.12 mm
Z = 4

Data collection

Bruker SMART APEX diffractometer 4351 independent reflections
Radiation source: fine-focus sealed tube 3217 reflections with I > 2σ(I)
graphite Rint = 0.031
φ and ω scans θmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −16→17
Tmin = 0.41, Tmax = 0.64 k = −7→9
11586 measured reflections l = −25→26

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.057 H atoms treated by a mixture of independent and constrained refinement
S = 1.01 w = 1/[σ2(Fo2) + (0.0207P)2 + 0.5359P] where P = (Fo2 + 2Fc2)/3
4351 reflections (Δ/σ)max = 0.002
284 parameters Δρmax = 0.67 e Å3
0 restraints Δρmin = −0.84 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C2 0.8132 (4) 0.3909 (8) −0.2038 (3) 0.0445 (14)
H2 0.8549 0.3558 −0.2330 0.053*
C7 0.6301 (4) 0.7203 (7) 0.0288 (2) 0.0479 (15)
H7 0.6592 0.7552 0.0677 0.058*
C8 0.5367 (4) 0.7611 (8) 0.0162 (2) 0.0465 (14)
H8 0.5047 0.8245 0.0459 0.056*
C9 0.4920 (4) 0.7077 (7) −0.0400 (2) 0.0387 (13)
H9 0.4290 0.7309 −0.0488 0.046*
C10 0.5440 (3) 0.6156 (6) −0.0847 (2) 0.0292 (11)
C11 0.5070 (3) 0.5568 (6) −0.1458 (2) 0.0291 (11)
C13 0.4226 (3) 0.4818 (6) −0.2345 (2) 0.0308 (11)
C14 0.3454 (3) 0.4641 (7) −0.2832 (2) 0.0344 (12)
C15 0.3641 (4) 0.5059 (7) −0.3451 (2) 0.0434 (13)
C16 0.2540 (4) 0.4097 (8) −0.2700 (3) 0.0424 (14)
C17 0.2914 (5) 0.5155 (8) −0.3934 (3) 0.0595 (18)
H17 0.3039 0.5523 −0.4340 0.071*
C18 0.2032 (5) 0.4714 (8) −0.3811 (3) 0.0593 (18)
H18 0.1557 0.4787 −0.4133 0.071*
C19 0.1830 (4) 0.4155 (8) −0.3208 (3) 0.0546 (17)
C20 0.0924 (5) 0.3593 (10) −0.3092 (4) 0.083 (2)
H20 0.0451 0.3663 −0.3416 0.099*
C21 0.0735 (5) 0.2951 (11) −0.2514 (5) 0.090 (3)
H21 0.0131 0.2589 −0.2448 0.108*
C22 0.1429 (5) 0.2820 (10) −0.2013 (3) 0.075 (2)
H22 0.1294 0.2351 −0.1621 0.091*
C23 0.2314 (4) 0.3399 (8) −0.2110 (3) 0.0563 (17)
H23 0.2775 0.3327 −0.1778 0.068*
N3 0.4179 (3) 0.5490 (5) −0.17388 (18) 0.0316 (10)
H3A 0.3681 0.5804 −0.1567 0.038*
O1 0.4506 (3) 0.5473 (6) −0.36141 (19) 0.0563 (11)
H1A 0.488 (5) 0.518 (10) −0.326 (4) 0.12 (3)*
C1 0.8439 (4) 0.4232 (8) −0.1411 (3) 0.0466 (14)
H1 0.9066 0.4048 −0.1290 0.056*
C3 0.7213 (4) 0.4112 (7) −0.2222 (2) 0.0395 (13)
H3 0.6990 0.3871 −0.2639 0.047*
C4 0.6609 (3) 0.4691 (6) −0.1774 (2) 0.0313 (11)
C5 0.6970 (3) 0.5071 (6) −0.1156 (2) 0.0323 (11)
C6 0.6386 (3) 0.5855 (6) −0.0694 (2) 0.0298 (11)
C12 0.5631 (3) 0.4922 (6) −0.1909 (2) 0.0301 (11)
N1 0.6800 (3) 0.6338 (6) −0.01211 (19) 0.0390 (11)
N2 0.7895 (3) 0.4787 (5) −0.09743 (19) 0.0375 (10)
N4 0.5108 (3) 0.4486 (5) −0.24611 (18) 0.0316 (10)
Hg1 0.837535 (16) 0.50252 (3) 0.013119 (11) 0.05187 (8)
I1 0.78377 (3) 0.23045 (5) 0.087966 (19) 0.05635 (12)
I2 0.96077 (3) 0.77042 (5) 0.026201 (19) 0.05224 (12)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C2 0.039 (3) 0.053 (4) 0.043 (3) 0.006 (3) 0.014 (3) 0.005 (3)
C7 0.070 (4) 0.047 (4) 0.026 (3) −0.011 (3) 0.003 (3) −0.006 (3)
C8 0.064 (4) 0.047 (4) 0.029 (3) 0.001 (3) 0.010 (3) −0.004 (3)
C9 0.041 (3) 0.041 (3) 0.035 (3) 0.005 (2) 0.013 (2) 0.003 (3)
C10 0.035 (3) 0.026 (3) 0.027 (3) −0.002 (2) 0.003 (2) 0.004 (2)
C11 0.029 (3) 0.033 (3) 0.025 (3) 0.000 (2) 0.003 (2) 0.001 (2)
C13 0.042 (3) 0.026 (3) 0.025 (2) −0.003 (2) 0.005 (2) 0.002 (2)
C14 0.040 (3) 0.037 (3) 0.026 (3) 0.000 (2) 0.002 (2) −0.003 (2)
C15 0.060 (4) 0.033 (3) 0.035 (3) 0.006 (3) −0.007 (3) −0.003 (3)
C16 0.037 (3) 0.044 (3) 0.046 (3) 0.007 (3) 0.000 (3) −0.015 (3)
C17 0.099 (6) 0.042 (4) 0.034 (3) 0.013 (4) −0.015 (3) −0.005 (3)
C18 0.073 (5) 0.049 (4) 0.050 (4) 0.018 (3) −0.029 (3) −0.016 (3)
C19 0.046 (4) 0.044 (4) 0.070 (5) 0.015 (3) −0.020 (3) −0.021 (3)
C20 0.043 (5) 0.086 (6) 0.115 (7) 0.014 (4) −0.016 (4) −0.039 (5)
C21 0.037 (4) 0.095 (6) 0.140 (8) −0.002 (4) 0.018 (5) −0.048 (6)
C22 0.060 (5) 0.094 (6) 0.077 (5) −0.018 (4) 0.033 (4) −0.033 (4)
C23 0.049 (4) 0.071 (4) 0.051 (4) −0.009 (3) 0.013 (3) −0.024 (3)
N3 0.035 (2) 0.034 (2) 0.026 (2) −0.0019 (18) 0.0057 (18) −0.0040 (18)
O1 0.071 (3) 0.066 (3) 0.033 (2) −0.006 (2) 0.012 (2) 0.001 (2)
C1 0.029 (3) 0.058 (4) 0.052 (4) 0.003 (3) 0.004 (3) 0.007 (3)
C3 0.042 (3) 0.042 (3) 0.035 (3) 0.004 (2) 0.005 (3) −0.001 (3)
C4 0.033 (3) 0.030 (3) 0.031 (3) 0.000 (2) 0.006 (2) 0.002 (2)
C5 0.034 (3) 0.024 (3) 0.038 (3) −0.002 (2) 0.002 (2) 0.003 (2)
C6 0.039 (3) 0.027 (3) 0.024 (3) −0.006 (2) 0.002 (2) 0.006 (2)
C12 0.034 (3) 0.028 (3) 0.028 (3) −0.002 (2) 0.002 (2) 0.001 (2)
N1 0.047 (3) 0.038 (3) 0.031 (2) −0.006 (2) −0.004 (2) 0.003 (2)
N2 0.032 (2) 0.040 (3) 0.040 (2) 0.000 (2) −0.0001 (19) 0.004 (2)
N4 0.033 (2) 0.037 (2) 0.025 (2) −0.0007 (18) 0.0039 (18) −0.0021 (18)
Hg1 0.04968 (14) 0.05769 (16) 0.04649 (14) −0.01629 (12) −0.00742 (10) 0.00740 (13)
I1 0.0555 (2) 0.0551 (3) 0.0607 (3) 0.00396 (19) 0.0187 (2) 0.0143 (2)
I2 0.0464 (2) 0.0458 (2) 0.0623 (3) −0.00957 (18) −0.00981 (18) 0.0071 (2)

Geometric parameters (Å, °)

C2—C3 1.361 (7) C18—H18 0.9300
C2—C1 1.385 (7) C19—C20 1.410 (9)
C2—H2 0.9300 C20—C21 1.357 (11)
C7—N1 1.327 (6) C20—H20 0.9300
C7—C8 1.385 (8) C21—C22 1.403 (10)
C7—H7 0.9300 C21—H21 0.9300
C8—C9 1.363 (7) C22—C23 1.375 (8)
C8—H8 0.9300 C22—H22 0.9300
C9—C10 1.420 (6) C23—H23 0.9300
C9—H9 0.9300 N3—H3A 0.8600
C10—C6 1.396 (6) O1—H1A 0.91 (8)
C10—C11 1.425 (6) C1—N2 1.322 (6)
C11—N3 1.375 (6) C1—H1 0.9300
C11—C12 1.381 (6) C3—C4 1.402 (6)
C13—N4 1.337 (6) C3—H3 0.9300
C13—N3 1.378 (6) C4—C5 1.396 (7)
C13—C14 1.463 (6) C4—C12 1.427 (6)
C14—C15 1.391 (7) C5—N2 1.374 (6)
C14—C16 1.425 (7) C5—C6 1.456 (6)
C15—O1 1.355 (7) C6—N1 1.354 (6)
C15—C17 1.407 (8) C12—N4 1.376 (6)
C16—C23 1.409 (8) N1—Hg1 2.486 (4)
C16—C19 1.425 (7) N2—Hg1 2.391 (4)
C17—C18 1.358 (9) Hg1—I2 2.6435 (4)
C17—H17 0.9300 Hg1—I1 2.6912 (5)
C18—C19 1.389 (9)
C3—C2—C1 119.2 (5) C20—C21—H21 119.3
C3—C2—H2 120.4 C22—C21—H21 119.3
C1—C2—H2 120.4 C23—C22—C21 118.9 (7)
N1—C7—C8 123.2 (5) C23—C22—H22 120.6
N1—C7—H7 118.4 C21—C22—H22 120.6
C8—C7—H7 118.4 C22—C23—C16 121.7 (6)
C9—C8—C7 119.4 (5) C22—C23—H23 119.2
C9—C8—H8 120.3 C16—C23—H23 119.2
C7—C8—H8 120.3 C11—N3—C13 107.6 (4)
C8—C9—C10 118.5 (5) C11—N3—H3A 126.2
C8—C9—H9 120.8 C13—N3—H3A 126.2
C10—C9—H9 120.8 C15—O1—H1A 103 (5)
C6—C10—C9 118.6 (5) N2—C1—C2 123.9 (5)
C6—C10—C11 116.9 (4) N2—C1—H1 118.1
C9—C10—C11 124.5 (4) C2—C1—H1 118.1
N3—C11—C12 105.5 (4) C2—C3—C4 118.9 (5)
N3—C11—C10 132.4 (4) C2—C3—H3 120.5
C12—C11—C10 122.1 (4) C4—C3—H3 120.5
N4—C13—N3 110.6 (4) C5—C4—C3 119.0 (4)
N4—C13—C14 122.6 (4) C5—C4—C12 117.1 (4)
N3—C13—C14 126.5 (4) C3—C4—C12 123.9 (5)
C15—C14—C16 119.7 (5) N2—C5—C4 121.1 (4)
C15—C14—C13 116.7 (4) N2—C5—C6 118.1 (4)
C16—C14—C13 123.6 (4) C4—C5—C6 120.8 (4)
O1—C15—C14 122.6 (5) N1—C6—C10 121.4 (5)
O1—C15—C17 117.0 (5) N1—C6—C5 117.7 (4)
C14—C15—C17 120.3 (6) C10—C6—C5 120.9 (4)
C23—C16—C19 118.4 (5) N4—C12—C11 110.6 (4)
C23—C16—C14 123.7 (5) N4—C12—C4 127.6 (4)
C19—C16—C14 117.8 (5) C11—C12—C4 121.7 (4)
C18—C17—C15 120.4 (6) C7—N1—C6 118.8 (5)
C18—C17—H17 119.8 C7—N1—Hg1 125.3 (3)
C15—C17—H17 119.8 C6—N1—Hg1 115.0 (3)
C17—C18—C19 120.8 (6) C1—N2—C5 117.9 (4)
C17—C18—H18 119.6 C1—N2—Hg1 124.2 (3)
C19—C18—H18 119.6 C5—N2—Hg1 117.6 (3)
C18—C19—C20 120.6 (6) C13—N4—C12 105.6 (4)
C18—C19—C16 120.6 (6) N2—Hg1—N1 68.14 (14)
C20—C19—C16 118.8 (7) N2—Hg1—I2 107.31 (9)
C21—C20—C19 120.8 (7) N1—Hg1—I2 109.47 (10)
C21—C20—H20 119.6 N2—Hg1—I1 116.46 (9)
C19—C20—H20 119.6 N1—Hg1—I1 96.33 (9)
C20—C21—C22 121.4 (7) I2—Hg1—I1 135.010 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N3—H3A···I1i 0.86 3.05 3.896 (4) 167.
O1—H1A···N4 0.91 (8) 1.77 (8) 2.623 (6) 155 (7)

Symmetry codes: (i) −x+1, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5643).

References

  1. Bruker (1997). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Wang, X. Y., Ma, X. Y., Liu, Y., Xu, Z. L. & Kong, Z. G. (2010). Chin. J. Inorg. Chem. 26, 1482–1484.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037160/bt5643sup1.cif

e-67-m1396-sup1.cif (18.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037160/bt5643Isup2.hkl

e-67-m1396-Isup2.hkl (208.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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