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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Sep 30;67(Pt 10):m1468–m1469. doi: 10.1107/S1600536811038530

Disodium diaqua­bis­(methyl­enedi­phos­pho­nato-κ2 O,O′)cobaltate(II) dihydrate

Kina van Merwe a,*, Hendrik G Visser a, Johan A Venter a
PMCID: PMC3201543  PMID: 22058722

Abstract

In the title compound, Na2[Co(CH4O6P2)2(H2O)2]·2H2O, the asymmetric unit is composed of one methyl­enediphospho­nate ligand and one water mol­ecule, which both are coordinated to a CoII atom, as well as a non-coordinated water mol­ecule and a sodium cation. The CoII atom occupies a special position on a crystallographic inversion centre. The slightly distorted CoIIO6 octa­hedral coordination environment is composed of two bidentate methyl­enediphospho­nate ligands and two coordinated water mol­ecules in trans positions. The sodium ion is octa­hedrally coordinated to six O atoms with Na—O distances ranging from 2.3149 (12) to 2.6243 (12) Å. An extensive three-dimensional network of inter­molecular as well as intra­molecular O—H⋯O and C—H⋯O hydrogen bonding inter­acions is present.

Related literature

For general background to organic diphospho­nic acids, see: Vega et al. (1996). For related structures, see: Bon et al. (2010); DeLaMatter et al. (1973); Harmony et al. (1984); Jurisson et al. (1983); Van der Merwe et al. (2010). For bond lengths and angles in related structures, see: Bao et al. (2003); Cao et al. (2007); Gong et al. (2006); Van der Merwe et al. (2009); Visser et al. (2010); Yin et al. (2003).graphic file with name e-67-m1468-scheme1.jpg

Experimental

Crystal data

  • Na2[Co(CH4O6P2)2(H2O)2]·2H2O

  • M r = 524.94

  • Monoclinic, Inline graphic

  • a = 6.8694 (2) Å

  • b = 13.2860 (4) Å

  • c = 8.3541 (3) Å

  • β = 91.375 (1)°

  • V = 762.23 (4) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 1.69 mm−1

  • T = 100 K

  • 0.52 × 0.24 × 0.09 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS, Bruker, 2007) T min = 0.474, T max = 0.863

  • 8742 measured reflections

  • 1901 independent reflections

  • 1838 reflections with I > 2σ(I)

  • R int = 0.022

Refinement

  • R[F 2 > 2σ(F 2)] = 0.019

  • wR(F 2) = 0.055

  • S = 1.13

  • 1901 reflections

  • 146 parameters

  • 7 restraints

  • All H-atom parameters refined

  • Δρmax = 0.36 e Å−3

  • Δρmin = −0.57 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT-Plus (Bruker, 2007); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811038530/wm2520sup1.cif

e-67-m1468-sup1.cif (16.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038530/wm2520Isup2.hkl

e-67-m1468-Isup2.hkl (91.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Co1—O1 2.0886 (10)
Co1—O7 2.0900 (10)
Co1—O2i 2.1141 (10)

Symmetry code: (i) Inline graphic.

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O8—H6⋯O7 0.86 (1) 1.88 (1) 2.7154 (15) 164 (2)
C1—H4⋯O1i 0.92 (2) 2.54 (2) 3.1449 (17) 123.9 (15)
C1—H3⋯O4ii 0.92 (2) 2.53 (2) 3.4366 (17) 168.4 (17)
O3—H2⋯O2ii 0.81 (3) 1.84 (3) 2.6394 (14) 176 (3)
O1—H1A⋯O6iii 0.83 (2) 1.98 (2) 2.8008 (14) 173 (2)
O8—H7⋯O1iii 0.83 (1) 2.57 (2) 3.2763 (15) 143 (2)
O1—H1B⋯O4iv 0.83 (2) 1.84 (2) 2.6634 (15) 175 (2)
O5—H5⋯O6v 0.82 (2) 1.81 (2) 2.6272 (14) 177 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

The University of the Free State and Professor A. Roodt are gratefully acknowledged for financial support.

supplementary crystallographic information

Comment

The title compound forms part of an ongoing study involving methylene diphosphonate, and its coordination to various metal cores.

In the past 20 years numerous diphosphonate compounds have undergone intensive pharmacological studies primarily because of their possible use in treating bone diseases. This can be attributed to the fact that bisphosphonic acids are excellent anti-hypercalcemics and have a high affinity for bone tissue (Vega et al., 1996).

In the title compound, Na2[Co(CH4O6P2)2(H2O)2].2H2O, (Fig. 1, Table 1), the asymmetric unit is composed of one methylene diphosphonate ligand and one aqueous molecule which are coordinated to a Co(II) atom, as well as a non-coordinated aqueous solvent molecule and a sodium cation. The Co(II) atom occupies a special position on a crystallographic inversion centre. The sodium ion is octahedrally coordinated to six oxygen atoms with Na—O distances ranging from 2.3149 (12) to 2.6243 (12) Å. The octahedral geometry around the CoII metal center is slightly distorted with O—Co—O angles ranging between 86.63 (4) ° and 93.14 (4) °. The Co—O bond lengths vary between 2.0886 (10) and 2.1141 (10) Å. These distances correspond to literature values (Bao et al. (2003); Cao et al. (2007); Gong et al. (2006); Yin et al. (2003); Van der Merwe et al. (2009); Visser et al. (2010).

A three-dimensional network is provided by numerous C—H–O and O—H–O hydrogen bonds (Figs. 2, 3 and Table 2).

Experimental

CoCl2.6H2O (0,1696 g, 0,00071 mol) and methylene diphosphonate (0,3726 g, 0,00212 mol) were dissolved in distilled water (5 cm3). Sodium hydroxide (3 cm3, 1 M) was gradually added to the solution mixture which was heated for three days at 413 K. The final pH of the solution was adjusted to 1.23 with hydrochloric acid. Pink crystals, suitable for X-ray diffraction, were obtained. (Yield: 27.6%)

Refinement

All H atoms were located from difference Fourier maps and were refined isotropically without further restraints. The highest residual electron density was located 0.78 Å from C1.

Figures

Fig. 1.

Fig. 1.

Representation of the title compound, showing the numbering scheme and displacement ellipsoids drawn at the 50% probability level. [Symmetry code: (i) 1-x, 1-y, -z].

Fig. 2.

Fig. 2.

The crystal packing of the title compound viewed along the a axis. Green dashed lines are employed to represent intermolecular hydrogen bonding and an orange dashed line was used to displace the intramolecular hydrogen bonding.

Fig. 3.

Fig. 3.

The packing diagram of the title compound viewed along the b axis. Green dashed lines are utilized to display the extensive intermolecular hydrogen bonding.

Crystal data

Na2[Co(CH4O6P2)2(H2O)2]·2H2O F(000) = 530
Mr = 524.94 Dx = 2.287 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 6202 reflections
a = 6.8694 (2) Å θ = 2.9–28.4°
b = 13.2860 (4) Å µ = 1.69 mm1
c = 8.3541 (3) Å T = 100 K
β = 91.375 (1)° Plate, pink
V = 762.23 (4) Å3 0.52 × 0.24 × 0.09 mm
Z = 2

Data collection

Bruker APEXII CCD diffractometer 1838 reflections with I > 2σ(I)
phi and ω scans Rint = 0.022
Absorption correction: multi-scan (SADABS, Bruker, 2007) θmax = 28.4°, θmin = 3.1°
Tmin = 0.474, Tmax = 0.863 h = −8→9
8742 measured reflections k = −17→16
1901 independent reflections l = −11→8

Refinement

Refinement on F2 7 restraints
Least-squares matrix: full All H-atom parameters refined
R[F2 > 2σ(F2)] = 0.019 w = 1/[σ2(Fo2) + (0.0289P)2 + 0.4299P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.055 (Δ/σ)max = 0.001
S = 1.13 Δρmax = 0.36 e Å3
1901 reflections Δρmin = −0.57 e Å3
146 parameters

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co1 0.5 0.5 0.5 0.00488 (8)
P1 0.43774 (5) 0.30632 (3) 0.26142 (4) 0.00528 (9)
P2 0.17626 (5) 0.48657 (3) 0.20454 (4) 0.00578 (9)
Na1 0.06611 (8) 0.75775 (4) 0.22722 (7) 0.01006 (13)
O1 0.33424 (15) 0.45566 (8) 0.69412 (12) 0.0092 (2)
O2 0.52678 (14) 0.35119 (7) 0.41366 (11) 0.00758 (19)
O3 0.61219 (15) 0.25484 (8) 0.17312 (12) 0.0084 (2)
O4 0.27445 (14) 0.23364 (8) 0.28565 (12) 0.0087 (2)
O5 0.17550 (15) 0.58645 (8) 0.10142 (12) 0.0091 (2)
O6 −0.02026 (14) 0.43517 (8) 0.18700 (11) 0.00828 (19)
O7 0.23609 (15) 0.51625 (8) 0.37290 (12) 0.0081 (2)
O8 0.02069 (15) 0.67436 (8) 0.47388 (12) 0.0114 (2)
C1 0.3604 (2) 0.40539 (10) 0.12696 (15) 0.0072 (2)
H1A 0.241 (3) 0.4908 (15) 0.722 (3) 0.025 (6)*
H1B 0.321 (3) 0.3969 (13) 0.726 (3) 0.029 (6)*
H2 0.582 (4) 0.225 (2) 0.093 (3) 0.037 (7)*
H3 0.320 (3) 0.3732 (15) 0.035 (2) 0.015 (5)*
H4 0.469 (3) 0.4420 (15) 0.103 (2) 0.012 (4)*
H5 0.131 (4) 0.5780 (19) 0.011 (2) 0.038 (7)*
H6 0.092 (3) 0.6221 (13) 0.461 (3) 0.035 (5)*
H7 −0.091 (2) 0.6498 (18) 0.474 (3) 0.035 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.00514 (14) 0.00495 (14) 0.00451 (13) −0.00021 (8) −0.00063 (9) −0.00021 (8)
P1 0.00519 (16) 0.00539 (17) 0.00524 (15) 0.00033 (12) −0.00009 (11) −0.00059 (11)
P2 0.00623 (17) 0.00582 (17) 0.00523 (17) 0.00061 (12) −0.00118 (12) −0.00022 (11)
Na1 0.0087 (3) 0.0113 (3) 0.0102 (3) 0.0003 (2) −0.0008 (2) 0.0009 (2)
O1 0.0100 (5) 0.0072 (5) 0.0105 (4) 0.0011 (4) 0.0035 (4) 0.0019 (4)
O2 0.0107 (5) 0.0061 (5) 0.0059 (4) 0.0008 (4) −0.0019 (3) −0.0008 (3)
O3 0.0068 (5) 0.0104 (5) 0.0081 (4) 0.0017 (4) −0.0002 (4) −0.0032 (4)
O4 0.0072 (5) 0.0074 (5) 0.0116 (4) −0.0008 (4) 0.0001 (3) 0.0000 (4)
O5 0.0121 (5) 0.0067 (5) 0.0084 (4) 0.0001 (4) −0.0035 (4) 0.0013 (4)
O6 0.0071 (4) 0.0094 (5) 0.0083 (4) −0.0004 (4) −0.0013 (3) −0.0002 (4)
O7 0.0080 (5) 0.0098 (5) 0.0064 (4) 0.0021 (4) −0.0021 (3) −0.0015 (3)
O8 0.0091 (5) 0.0141 (5) 0.0109 (5) 0.0018 (4) 0.0006 (4) −0.0003 (4)
C1 0.0076 (6) 0.0077 (6) 0.0061 (6) 0.0001 (5) 0.0000 (5) 0.0000 (5)

Geometric parameters (Å, °)

Co1—O1 2.0886 (10) Na1—O3iii 2.3431 (12)
Co1—O1i 2.0886 (10) Na1—O4iv 2.3612 (11)
Co1—O7 2.0900 (10) Na1—O6iv 2.4860 (12)
Co1—O7 2.0900 (10) Na1—O5 2.6243 (12)
Co1—O7i 2.0900 (10) O1—H1A 0.831 (16)
Co1—O2 2.1141 (10) O1—H1B 0.830 (16)
Co1—O2i 2.1141 (10) O3—Na1v 2.3431 (12)
P1—O4 1.4975 (10) O3—H2 0.81 (3)
P1—O2 1.5198 (10) O4—Na1vi 2.3612 (11)
P1—O3 1.5781 (10) O5—H5 0.815 (16)
P1—C1 1.8021 (14) O6—Na1vi 2.4860 (12)
P2—O7 1.5083 (10) O8—Na1vii 2.3149 (12)
P2—O7 1.5083 (10) O8—H6 0.856 (13)
P2—O6 1.5169 (10) O8—H7 0.834 (13)
P2—O5 1.5820 (10) C1—H3 0.92 (2)
P2—C1 1.7954 (14) C1—H4 0.92 (2)
Na1—O8ii 2.3149 (12)
O1—Co1—O1i 180 O5—P2—C1 107.49 (6)
O1—Co1—O7 86.63 (4) O8ii—Na1—O3iii 115.88 (4)
O1i—Co1—O7 93.37 (4) O8ii—Na1—O4iv 84.24 (4)
O1—Co1—O7 86.63 (4) O3iii—Na1—O4iv 159.88 (4)
O1i—Co1—O7 93.37 (4) O8ii—Na1—O6iv 83.04 (4)
O1—Co1—O7i 93.37 (4) O3iii—Na1—O6iv 92.19 (4)
O1i—Co1—O7i 86.63 (4) O4iv—Na1—O6iv 90.55 (4)
O7—Co1—O7i 180 O8ii—Na1—O5 90.31 (4)
O7—Co1—O7i 180 O3iii—Na1—O5 81.45 (4)
O1—Co1—O2 93.14 (4) O4iv—Na1—O5 99.03 (4)
O1i—Co1—O2 86.86 (4) O6iv—Na1—O5 167.75 (4)
O7—Co1—O2 90.28 (4) Co1—O1—H1A 119.7 (16)
O7—Co1—O2 90.28 (4) Co1—O1—H1B 125.4 (16)
O7i—Co1—O2 89.73 (4) H1A—O1—H1B 110 (2)
O1—Co1—O2i 86.86 (4) P1—O2—Co1 128.01 (6)
O1i—Co1—O2i 93.14 (4) P1—O3—Na1v 123.17 (6)
O7—Co1—O2i 89.72 (4) P1—O3—H2 114.8 (19)
O7—Co1—O2i 89.72 (4) Na1v—O3—H2 122.0 (19)
O7i—Co1—O2i 90.27 (4) P1—O4—Na1vi 130.61 (6)
O2—Co1—O2i 180.00 (5) P2—O5—Na1 120.44 (5)
O4—P1—O2 115.31 (6) P2—O5—H5 112.6 (18)
O4—P1—O3 111.31 (6) Na1—O5—H5 112.6 (18)
O2—P1—O3 105.44 (6) P2—O6—Na1vi 121.18 (5)
O4—P1—C1 110.17 (6) P2—O7—Co1 131.33 (6)
O2—P1—C1 109.98 (6) Na1vii—O8—H6 111.4 (16)
O3—P1—C1 103.94 (6) Na1vii—O8—H7 104.6 (17)
O7—P2—O6 115.45 (6) H6—O8—H7 102 (2)
O7—P2—O6 115.45 (6) P2—C1—P1 114.42 (7)
O7—P2—O5 106.61 (6) P2—C1—H3 112.4 (12)
O7—P2—O5 106.61 (6) P1—C1—H3 105.2 (12)
O6—P2—O5 109.49 (6) P2—C1—H4 110.3 (12)
O7—P2—C1 108.36 (6) P1—C1—H4 107.1 (12)
O7—P2—C1 108.36 (6) H3—C1—H4 107.0 (17)
O6—P2—C1 109.14 (6)
O4—P1—O2—Co1 −108.16 (8) O6iv—Na1—O5—P2 140.99 (16)
O3—P1—O2—Co1 128.63 (7) Na1ii—Na1—O5—P2 −161.48 (7)
C1—P1—O2—Co1 17.13 (9) Na1vii—Na1—O5—P2 16.59 (7)
O1—Co1—O2—P1 111.59 (7) O7—P2—O6—Na1vi −74.24 (8)
O1i—Co1—O2—P1 −68.41 (7) O7—P2—O6—Na1vi −74.24 (8)
O7—Co1—O2—P1 24.95 (7) O5—P2—O6—Na1vi 165.48 (5)
O7—Co1—O2—P1 24.95 (7) C1—P2—O6—Na1vi 48.07 (7)
O7i—Co1—O2—P1 −155.05 (7) O6—P2—O7—Co1 134.82 (7)
O4—P1—O3—Na1v −126.78 (7) O5—P2—O7—Co1 −103.34 (8)
O2—P1—O3—Na1v −1.06 (8) C1—P2—O7—Co1 12.09 (10)
C1—P1—O3—Na1v 114.66 (7) O1—Co1—O7—P2 −136.95 (8)
O2—P1—O4—Na1vi 97.12 (8) O1i—Co1—O7—P2 43.05 (8)
O3—P1—O4—Na1vi −142.84 (7) O2—Co1—O7—P2 −43.82 (8)
C1—P1—O4—Na1vi −28.09 (9) O2i—Co1—O7—P2 136.18 (8)
O7—P2—O5—Na1 −35.73 (8) O7—P2—C1—P1 46.92 (9)
O7—P2—O5—Na1 −35.73 (8) O7—P2—C1—P1 46.92 (9)
O6—P2—O5—Na1 89.81 (7) O6—P2—C1—P1 −79.55 (8)
C1—P2—O5—Na1 −151.75 (6) O5—P2—C1—P1 161.78 (7)
O8ii—Na1—O5—P2 −162.13 (6) O4—P1—C1—P2 66.52 (9)
O3iii—Na1—O5—P2 81.72 (6) O2—P1—C1—P2 −61.67 (9)
O4iv—Na1—O5—P2 −77.92 (7) O3—P1—C1—P2 −174.14 (7)

Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, −y+3/2, z−1/2; (iii) −x+1, y+1/2, −z+1/2; (iv) −x, y+1/2, −z+1/2; (v) −x+1, y−1/2, −z+1/2; (vi) −x, y−1/2, −z+1/2; (vii) x, −y+3/2, z+1/2.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O8—H6···O7 0.86 (1) 1.88 (1) 2.7154 (15) 164 (2)
C1—H4···O1i 0.92 (2) 2.54 (2) 3.1449 (17) 123.9 (15)
C1—H3···O4viii 0.92 (2) 2.53 (2) 3.4366 (17) 168.4 (17)
O3—H2···O2viii 0.81 (3) 1.84 (3) 2.6394 (14) 176 (3)
O1—H1A···O6ix 0.83 (2) 1.98 (2) 2.8008 (14) 173 (2)
O8—H7···O1ix 0.83 (1) 2.57 (2) 3.2763 (15) 143 (2)
O1—H1B···O4x 0.83 (2) 1.84 (2) 2.6634 (15) 175 (2)
O5—H5···O6xi 0.82 (2) 1.81 (2) 2.6272 (14) 177 (3)

Symmetry codes: (i) −x+1, −y+1, −z+1; (viii) x, −y+1/2, z−1/2; (ix) −x, −y+1, −z+1; (x) x, −y+1/2, z+1/2; (xi) −x, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: WM2520).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811038530/wm2520sup1.cif

e-67-m1468-sup1.cif (16.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038530/wm2520Isup2.hkl

e-67-m1468-Isup2.hkl (91.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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