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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jul 6;67(Pt 8):o1923. doi: 10.1107/S1600536811025694

Bis(4-pyrid­yl) disulfide–2,2′-[(p-phenyl­enebis(­oxy)]diacetic acid (1/1)

Guang-Yin Wang a,*
PMCID: PMC3212313  PMID: 22090970

Abstract

The asymmetric unit of the title 1:1 co-crystal, C10H8N2S2·C10H10O6, comprises two half-mol­ecules, the bis­(4-pyrid­yl) disulfide having twofold rotational symmetry and the 2,2′-[(p-phenyl­enebis(­oxy)]diacetic acid having crystallographic inversion symmetry. In the disulfide mol­ecule, the dihedral angle between the two pyridine rings is 86.8 (1)°, while the carboxyl groups of the substituted quinone lie essentially in the plane of the benzene ring [dihedral angle = 5.3 (1)°]. In the crystal, the components are linked via inter­molecular O—H⋯N hydrogen bonds into zigzag chains which extend along c and are inter­linked through C—H⋯π associations.

Related literature

For the use of bis­(4-pyrid­yl)disulfide (bpds) as a linker in the construction of coordination polymers, see: Kondo et al. (2000); Zhu et al. (2010).graphic file with name e-67-o1923-scheme1.jpg

Experimental

Crystal data

  • C10H8N2S2·C10H10O6

  • M r = 446.50

  • Monoclinic, Inline graphic

  • a = 14.331 (1) Å

  • b = 5.057 (1) Å

  • c = 28.003 (3) Å

  • β = 90.200 (5)°

  • V = 2029.4 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.30 mm−1

  • T = 296 K

  • 0.31 × 0.21 × 0.09 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.912, T max = 0.974

  • 4893 measured reflections

  • 1761 independent reflections

  • 1450 reflections with I > 2σ(I)

  • R int = 0.026

Refinement

  • R[F 2 > 2σ(F 2)] = 0.043

  • wR(F 2) = 0.114

  • S = 1.05

  • 1761 reflections

  • 137 parameters

  • H-atom parameters constrained

  • Δρmax = 0.62 e Å−3

  • Δρmin = −0.29 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811025694/zs2125sup1.cif

e-67-o1923-sup1.cif (15KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025694/zs2125Isup2.hkl

e-67-o1923-Isup2.hkl (86.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C8–C10/C8′–C10′ ring.

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3⋯N1i 0.82 1.81 2.629 (3) 174
C7—H7BCg1ii 0.97 2.76 3.528 (2) 136

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported financially by the Project of Shandong Province Higher Educational Science and Technology Program (grant No. J11LB56).

supplementary crystallographic information

Comment

Bis(4-pyridyl)disulfide (bpds) is often used as a linker in the construction of coordination polymers because of its flexibility (Kondo et al., 2000; Zhu et al., 2010). The attempt at synthesizing a CdII coordination polymer using bis(4-pyridyl)disulfide and hydroquinone-O,O'-diacetic acid (H2qda) as ligands gave instead the 1:1 title co-crystal C10H8N2S2 . C10H10O6, and the crystal structure is reported here.

In the title compound, the asymmetric unit comprises two half molecules, the bis(4-pyridyl)disulfide having twofold rotational symmetry and the hydroquinone-O,O'-diacetic acid having crystallographic inversion symmetry (Fig. 1). In the disulfide molecule, the dihedral angle between the two pyridine rings is 93.2 (1)° while the carboxylic acid groups of the substituted quinone molecule lie essentially in the plane of the benzene ring [dihedral angle, 5.3 (1)°]. In the crystal, the two components are linked via intermolecular O—H···N hydrogen bonds into one-dimensional zigzag chains which extend along c (Fig. 2) and are inter-linked through C—H···π associations (Table 1, Fig. 3).

Experimental

A mixture of hydroquinone-O,O'-diacetic acid (H2qda) (0.023 g, 0.1 mmol), bis(4-pyridyl)disulfide (bpds) (0.022 g, 0.1 mmol) and Cd(NO3)2 . 4H2O (0.038 g, 0.1 mmol) in H2O (7.0 ml) was placed in a 16 ml Teflon-lined stainless steel vessel and heated to 160 °C for 48 h, then cooled to room temperature at a rate of -5 °C/h. The solution was filtered and the colorless filtrate was allowed to stand at room temperature. Slow evaporation for about one week afforded colorless block crystals.

Refinement

All H atoms bonded to C atoms were added according to theoretical models, assigned isotropic displacement parameters and allowed to ride on their respective parent atoms [C—H = 0.93–0.97 Å and Uiso(H) = 1.2Ueq(C)]. The carboxylic acid H atom was located from the Fourier map and allowed to ride on the parent O atom in the final cycles of refinement, with the O—H distance being fixed at 0.82 Å with Uiso(H) = 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

Atom numbering scheme and anisotropic displacement ellipsoid plot of (I) at the 50% probability level. H atoms are represented by circles of arbitrary size. Symmetry codes: (i) -x + 2, y, -z + 1/2; (ii) -x, -y + 2, -z.

Fig. 2.

Fig. 2.

The one-dimensional zigzag chain structure of the title compound. Non-associative H atoms are omitted and hydrogen bonds are shown as dashed lines.

Fig. 3.

Fig. 3.

The packing diagram of the title compound showing C—H···π interactions.

Crystal data

C10H8N2S2·C10H10O6 F(000) = 928
Mr = 446.50 Dx = 1.461 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 1634 reflections
a = 14.331 (1) Å θ = 2.8–25.2°
b = 5.057 (1) Å µ = 0.30 mm1
c = 28.003 (3) Å T = 296 K
β = 90.200 (5)° Block, colorless
V = 2029.4 (5) Å3 0.31 × 0.21 × 0.09 mm
Z = 4

Data collection

Bruker APEXII CCD area-detector diffractometer 1761 independent reflections
Radiation source: fine-focus sealed tube 1450 reflections with I > 2σ(I)
graphite Rint = 0.026
φ and ω scans θmax = 25.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2001) h = −10→16
Tmin = 0.912, Tmax = 0.974 k = −5→5
4893 measured reflections l = −33→32

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0548P)2 + 1.8236P] where P = (Fo2 + 2Fc2)/3
1761 reflections (Δ/σ)max < 0.001
137 parameters Δρmax = 0.62 e Å3
0 restraints Δρmin = −0.29 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.92972 (4) −0.22476 (13) 0.24909 (2) 0.0514 (2)
O1 0.07968 (11) 0.6344 (3) 0.06109 (5) 0.0485 (4)
O2 0.15067 (12) 0.2818 (4) 0.12321 (6) 0.0596 (5)
N1 0.83733 (14) 0.3882 (5) 0.14055 (7) 0.0543 (6)
O3 0.26328 (12) 0.1757 (4) 0.07197 (7) 0.0683 (6)
H3 0.2843 0.0923 0.0947 0.102*
C8 0.04234 (15) 0.8125 (4) 0.02905 (8) 0.0389 (5)
C9 −0.02803 (15) 0.9711 (5) 0.04649 (8) 0.0440 (6)
H9 −0.0471 0.9519 0.0780 0.053*
C7 0.15542 (15) 0.4802 (5) 0.04525 (8) 0.0465 (6)
H7A 0.2061 0.5945 0.0353 0.056*
H7B 0.1364 0.3737 0.0181 0.056*
C3 0.89942 (16) 0.0216 (4) 0.20664 (8) 0.0425 (5)
C6 0.18774 (15) 0.3037 (5) 0.08524 (9) 0.0462 (6)
C1 0.92798 (17) 0.3451 (5) 0.14718 (8) 0.0517 (6)
H1 0.9703 0.4408 0.1289 0.062*
C2 0.96216 (16) 0.1654 (5) 0.17981 (8) 0.0476 (6)
H2 1.0261 0.1414 0.1837 0.057*
C10 −0.07061 (15) 1.1580 (5) 0.01785 (8) 0.0443 (6)
H10 −0.1181 1.2636 0.0300 0.053*
C4 0.80519 (17) 0.0660 (6) 0.19985 (10) 0.0584 (7)
H4 0.7612 −0.0283 0.2173 0.070*
C5 0.77771 (19) 0.2495 (6) 0.16724 (11) 0.0639 (8)
H5 0.7142 0.2800 0.1633 0.077*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0554 (4) 0.0495 (4) 0.0492 (4) −0.0077 (3) −0.0039 (3) 0.0034 (3)
O1 0.0518 (10) 0.0482 (10) 0.0455 (9) 0.0114 (8) 0.0044 (7) 0.0065 (8)
O2 0.0509 (10) 0.0769 (13) 0.0511 (10) 0.0127 (9) 0.0051 (8) 0.0143 (9)
N1 0.0542 (13) 0.0617 (14) 0.0470 (11) 0.0169 (11) −0.0012 (9) 0.0002 (10)
O3 0.0555 (11) 0.0901 (15) 0.0593 (11) 0.0314 (10) 0.0075 (9) 0.0199 (10)
C8 0.0398 (12) 0.0344 (12) 0.0426 (12) −0.0008 (9) −0.0022 (9) 0.0013 (9)
C9 0.0490 (13) 0.0446 (14) 0.0384 (12) 0.0034 (11) 0.0044 (10) 0.0003 (10)
C7 0.0410 (12) 0.0475 (15) 0.0508 (13) 0.0035 (10) 0.0000 (10) 0.0048 (11)
C3 0.0492 (13) 0.0423 (13) 0.0361 (11) 0.0021 (10) −0.0012 (9) −0.0069 (10)
C6 0.0397 (13) 0.0484 (14) 0.0504 (14) −0.0009 (11) −0.0047 (11) 0.0023 (11)
C1 0.0531 (15) 0.0570 (16) 0.0451 (13) 0.0090 (12) 0.0057 (11) 0.0037 (12)
C2 0.0424 (13) 0.0553 (15) 0.0452 (13) 0.0083 (11) 0.0005 (10) 0.0001 (11)
C10 0.0426 (12) 0.0420 (13) 0.0481 (13) 0.0054 (10) 0.0044 (10) −0.0011 (10)
C4 0.0454 (14) 0.0656 (18) 0.0643 (16) −0.0013 (13) 0.0037 (12) 0.0045 (14)
C5 0.0468 (15) 0.075 (2) 0.0701 (18) 0.0106 (14) −0.0039 (13) 0.0013 (16)

Geometric parameters (Å, °)

S1—C3 1.775 (2) C7—C6 1.504 (3)
S1—S1i 2.0150 (14) C7—H7A 0.9700
O1—C8 1.378 (3) C7—H7B 0.9700
O1—C7 1.409 (3) C3—C2 1.381 (3)
O2—C6 1.195 (3) C3—C4 1.381 (3)
N1—C1 1.330 (3) C1—C2 1.378 (3)
N1—C5 1.336 (4) C1—H1 0.9300
O3—C6 1.316 (3) C2—H2 0.9300
O3—H3 0.8200 C10—C8ii 1.384 (3)
C8—C9 1.379 (3) C10—H10 0.9300
C8—C10ii 1.384 (3) C4—C5 1.359 (4)
C9—C10 1.380 (3) C4—H4 0.9300
C9—H9 0.9300 C5—H5 0.9300
C3—S1—S1i 105.02 (8) O2—C6—O3 125.0 (2)
C8—O1—C7 117.02 (17) O2—C6—C7 125.5 (2)
C1—N1—C5 117.5 (2) O3—C6—C7 109.5 (2)
C6—O3—H3 109.5 N1—C1—C2 123.1 (2)
C9—C8—O1 115.61 (19) N1—C1—H1 118.5
C9—C8—C10ii 119.4 (2) C2—C1—H1 118.5
O1—C8—C10ii 125.0 (2) C1—C2—C3 118.5 (2)
C8—C9—C10 121.0 (2) C1—C2—H2 120.7
C8—C9—H9 119.5 C3—C2—H2 120.7
C10—C9—H9 119.5 C9—C10—C8ii 119.7 (2)
O1—C7—C6 109.23 (19) C9—C10—H10 120.2
O1—C7—H7A 109.8 C8ii—C10—H10 120.2
C6—C7—H7A 109.8 C5—C4—C3 119.0 (2)
O1—C7—H7B 109.8 C5—C4—H4 120.5
C6—C7—H7B 109.8 C3—C4—H4 120.5
H7A—C7—H7B 108.3 N1—C5—C4 123.4 (2)
C2—C3—C4 118.5 (2) N1—C5—H5 118.3
C2—C3—S1 125.16 (18) C4—C5—H5 118.3
C4—C3—S1 116.30 (18)
C7—O1—C8—C9 −176.4 (2) C5—N1—C1—C2 0.3 (4)
C7—O1—C8—C10ii 3.2 (3) N1—C1—C2—C3 0.5 (4)
O1—C8—C9—C10 179.7 (2) C4—C3—C2—C1 −0.5 (3)
C10ii—C8—C9—C10 0.1 (4) S1—C3—C2—C1 178.12 (18)
C8—O1—C7—C6 178.70 (18) C8—C9—C10—C8ii −0.1 (4)
S1i—S1—C3—C2 3.2 (2) C2—C3—C4—C5 −0.2 (4)
S1i—S1—C3—C4 −178.13 (17) S1—C3—C4—C5 −179.0 (2)
O1—C7—C6—O2 5.5 (3) C1—N1—C5—C4 −1.1 (4)
O1—C7—C6—O3 −174.7 (2) C3—C4—C5—N1 1.1 (4)

Symmetry codes: (i) −x+2, y, −z+1/2; (ii) −x, −y+2, −z.

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C8–C10/C8'–C10' ring.
D—H···A D—H H···A D···A D—H···A
O3—H3···N1iii 0.82 1.81 2.629 (3) 174
C7—H7B···Cg1iv 0.97 2.76 3.528 (2) 136

Symmetry codes: (iii) x−1/2, y−1/2, z; (iv) x, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZS2125).

References

  1. Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119.
  2. Bruker (2001). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  5. Kondo, M., Shimamura, M., Noro, S., Kimura, Y., Uemura, K. & Kitagawa, S. (2000). J. Solid State Chem. 152, 113–119.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Zhu, H.-L., Zhang, J. & Lin, J.-L. (2010). Acta Cryst. E66, m185. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811025694/zs2125sup1.cif

e-67-o1923-sup1.cif (15KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025694/zs2125Isup2.hkl

e-67-o1923-Isup2.hkl (86.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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