Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jul 13;67(Pt 8):o2034. doi: 10.1107/S1600536811027334

1-Phenyl­isatin

Deepak Shukla a, Manju Rajeswaran a,*
PMCID: PMC3213483  PMID: 22091062

Abstract

In the title compound, C14H9NO2, the phenyl ring makes a dihedral angle of 50.59 (5)° with the mean plane of the isatin fragment. In the crystal, mol­ecules are linked through weak inter­molecular C—H⋯O hydrogen bonds. The crystal structure also exhibits two slipped π–π inter­actions between the benzene rings of neighbouring mol­ecules [centroid–centroid distance = 3.968 (3) Å, inter­planar distance = 3.484 (3) Å and slippage = 1.899 (3) Å], and between the phenyl rings of neighbouring mol­ecules [centroid–centroid distance = 3.968 (3) Å, inter­planar distance = 3.638 (3) Å and slippage = 1.584 (3) Å].

Related literature

For the pharmacological properties of isatin derivatives, see: Prakash et al. (2010). For C—C bond lengths in dikotone moieties, see: Rathna & Chandrasekhar, (1991).graphic file with name e-67-o2034-scheme1.jpg

Experimental

Crystal data

  • C14H9NO2

  • M r = 223.22

  • Orthorhombic, Inline graphic

  • a = 3.9677 (1) Å

  • b = 13.3259 (4) Å

  • c = 20.3397 (7) Å

  • V = 1075.42 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 293 K

  • 0.37 × 0.30 × 0.15 mm

Data collection

  • Nonius KappaCCD diffractometer

  • 7556 measured reflections

  • 1462 independent reflections

  • 1085 reflections with I > 2σ(I)

  • R int = 0.051

Refinement

  • R[F 2 > 2σ(F 2)] = 0.038

  • wR(F 2) = 0.081

  • S = 1.06

  • 1462 reflections

  • 155 parameters

  • H-atom parameters constrained

  • Δρmax = 0.16 e Å−3

  • Δρmin = −0.12 e Å−3

Data collection: COLLECT (Nonius, 2000); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL, Mercury (Allen et al., 2004) and DIAMOND (Brandenburg, 1998)’; software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027334/lx2190sup1.cif

e-67-o2034-sup1.cif (16.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027334/lx2190Isup2.hkl

e-67-o2034-Isup2.hkl (72.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811027334/lx2190Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4⋯O2i 0.93 2.58 3.297 (3) 134
C7—H7⋯O1ii 0.93 2.52 3.262 (2) 137
C11—H11⋯O2iii 0.93 2.58 3.407 (3) 149

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

supplementary crystallographic information

Comment

Isatin is a commercially available indole derivative. Isatin derivatives are well known for their pharmacological properties such as anticonvulsant activity (Prakash et al., 2010). We report herein the crystal structure of the title compound.

In the title compound (Fig. 1), the isatin unit is essentially planar, with a mean deviation of 0.004 (2) Å from the least–squares plane defined by the nine constituent atoms. The phenyl ring makes a dihedral angle of 50.59 (5)° with the mean plane of the isatin fragment. The observed C—C bond length of 1.547 (3) Å in diketo moiety is slightly longer than normal C—C bond length (Rathna & Chandrasekhar, 1991). The crystal packing (Fig. 2) is stabilized by three weak intermolecular C—H···O hydrogen bonds; the first one between a benzene H atom and the O atom of the carbonyl unit (Table 1; C4—H4···O2i), the second one between a benzene H atom and the O atom of the carbonyl unit (Table 1; C7—H7···O1ii), and the third one between a phenyl H atom and the O atom of the carbonyl unit (Table 1; C11—H11···O2iii).

The crystal packing (Fig. 3) is further stabilized by two weak slipped π···π interactions (Fig. 4); the first one between the benzene rings of neighbouring molecules, with a Cg1···Cg1i distance of 3.968 (3) Å and an interplanar distance of 3.484 (3) Å resulting in a slippage of 1.899 (3) Å (Cg1 is the centroid of the C3–C8 benzene ring), and the second one between the phenyl rings of neighbouring molecules, with a Cg2···Cg2idistance of 3.968 (3) Å and an interplanar distance of 3.638 (3) Å resulting in a slippage of 1.584 (3) Å (Cg2 is the centroid of the C9–C14 phenyl ring)

Experimental

The title compound, 1–phenylisatin, was purchased from Aldrich Chemical Co.. Single crystals suitable for X—ray diffraction were obtained by sublimation under reduced pressure.

Refinement

All the Friedel pairs were merged. All H–atoms were positioned geometrically and refined using a riding model with d(C—H) = 0.93Å, Uiso=1.2Ueq (C) for aromatic 0.97Å, Uiso = 1.2Ueq (C) for CH2 atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Packing in title compound showing C—H···O interactions. [Symmetry codes: (i) x + 1/2, - y + 1/2, - z + 2; (ii) - x + 1, y - 1/2, - z + 3/2; (iii) - x, y - 1/2, - z + 3/2; (iv) x - 1/2, - y + 1/2, - z + 2; (v) - x + 1, y + 1/2, - z + 3/2; (vi) - x, y + 1/2, - z + 3/2.]

Fig. 3.

Fig. 3.

A perspective view of the stacking of title compound in the unit cell viewed down the approximate a axial direction.

Fig. 4.

Fig. 4.

A view of the π···π interactions (dotted lines) in the crystal structure of the title compound. [Symmetry codes: (i) x + 1, y, z; (ii) x - 1, yz.]

Crystal data

C14H9NO2 F(000) = 464
Mr = 223.22 Dx = 1.379 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 4093 reflections
a = 3.9677 (1) Å θ = 1.0–27.5°
b = 13.3259 (4) Å µ = 0.09 mm1
c = 20.3397 (7) Å T = 293 K
V = 1075.42 (6) Å3 Rods, orange
Z = 4 0.37 × 0.30 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer 1085 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.051
graphite θmax = 27.4°, θmin = 4.3°
Detector resolution: 9 pixels mm-1 h = −5→4
φ and ω scans k = −15→17
7556 measured reflections l = −26→25
1462 independent reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038 H-atom parameters constrained
wR(F2) = 0.081 w = 1/[σ2(Fo2) + (0.0318P)2 + 0.1048P] where P = (Fo2 + 2Fc2)/3
S = 1.06 (Δ/σ)max < 0.001
1462 reflections Δρmax = 0.16 e Å3
155 parameters Δρmin = −0.12 e Å3
0 restraints Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.017 (5)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.3503 (5) 0.20706 (10) 0.76634 (7) 0.0522 (4)
O1 0.0729 (4) 0.36020 (10) 0.75768 (7) 0.0685 (4)
O2 0.0940 (5) 0.34979 (11) 0.90098 (7) 0.0861 (6)
C1 0.1973 (6) 0.29305 (13) 0.78955 (9) 0.0544 (5)
C2 0.2117 (6) 0.28662 (15) 0.86534 (9) 0.0589 (6)
C3 0.3830 (6) 0.19284 (13) 0.87981 (9) 0.0550 (5)
C4 0.4654 (6) 0.14811 (16) 0.93889 (10) 0.0670 (6)
H4 0.4099 0.1786 0.9786 0.080*
C5 0.6316 (7) 0.05730 (16) 0.93787 (11) 0.0714 (7)
H5 0.6891 0.0258 0.9771 0.086*
C6 0.7124 (7) 0.01328 (16) 0.87866 (11) 0.0672 (6)
H6 0.8264 −0.0477 0.8789 0.081*
C7 0.6296 (6) 0.05666 (13) 0.81841 (10) 0.0572 (5)
H7 0.6849 0.0258 0.7788 0.069*
C8 0.4628 (5) 0.14699 (13) 0.82012 (8) 0.0497 (5)
C9 0.3944 (5) 0.18304 (13) 0.69803 (8) 0.0502 (5)
C10 0.2965 (6) 0.09053 (14) 0.67389 (10) 0.0591 (6)
H10 0.2021 0.0428 0.7017 0.071*
C11 0.3406 (7) 0.06987 (17) 0.60815 (10) 0.0697 (6)
H11 0.2796 0.0074 0.5916 0.084*
C12 0.4738 (7) 0.14081 (19) 0.56704 (11) 0.0746 (7)
H12 0.5012 0.1264 0.5226 0.090*
C13 0.5670 (7) 0.23267 (17) 0.59071 (10) 0.0706 (7)
H13 0.6557 0.2806 0.5623 0.085*
C14 0.5300 (6) 0.25464 (15) 0.65666 (10) 0.0580 (6)
H14 0.5956 0.3168 0.6730 0.070*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0648 (11) 0.0426 (8) 0.0491 (8) 0.0002 (9) 0.0042 (8) 0.0007 (7)
O1 0.0824 (11) 0.0514 (7) 0.0717 (9) 0.0092 (9) −0.0031 (9) 0.0038 (7)
O2 0.1197 (16) 0.0691 (9) 0.0694 (9) 0.0189 (12) 0.0108 (11) −0.0142 (8)
C1 0.0609 (13) 0.0437 (9) 0.0585 (11) −0.0030 (10) 0.0017 (10) −0.0003 (9)
C2 0.0685 (15) 0.0513 (10) 0.0570 (11) −0.0023 (12) 0.0054 (11) −0.0071 (9)
C3 0.0624 (13) 0.0509 (10) 0.0516 (10) −0.0062 (11) 0.0002 (11) −0.0008 (9)
C4 0.0776 (17) 0.0688 (12) 0.0547 (12) −0.0082 (13) −0.0035 (11) −0.0005 (10)
C5 0.0798 (18) 0.0711 (13) 0.0632 (14) −0.0008 (15) −0.0110 (13) 0.0132 (11)
C6 0.0685 (16) 0.0564 (11) 0.0767 (14) 0.0005 (12) −0.0096 (13) 0.0088 (11)
C7 0.0619 (13) 0.0499 (10) 0.0598 (12) 0.0004 (11) 0.0024 (12) −0.0010 (9)
C8 0.0538 (12) 0.0448 (9) 0.0507 (10) −0.0079 (10) 0.0012 (9) 0.0028 (8)
C9 0.0509 (12) 0.0521 (10) 0.0477 (10) 0.0018 (10) 0.0011 (9) 0.0003 (8)
C10 0.0625 (14) 0.0527 (11) 0.0622 (13) −0.0027 (11) 0.0032 (12) −0.0012 (9)
C11 0.0782 (17) 0.0662 (12) 0.0646 (14) 0.0101 (14) −0.0076 (13) −0.0139 (11)
C12 0.0856 (19) 0.0907 (16) 0.0475 (11) 0.0272 (16) −0.0009 (12) −0.0046 (12)
C13 0.0742 (17) 0.0805 (15) 0.0571 (12) 0.0090 (14) 0.0097 (13) 0.0159 (11)
C14 0.0598 (14) 0.0561 (10) 0.0581 (11) −0.0023 (11) 0.0022 (11) 0.0069 (9)

Geometric parameters (Å, °)

N1—C1 1.380 (2) C6—H6 0.9300
N1—C8 1.427 (2) C7—C8 1.374 (3)
N1—C9 1.436 (2) C7—H7 0.9300
O1—C1 1.210 (2) C9—C14 1.381 (3)
O2—C2 1.205 (2) C9—C10 1.383 (3)
C1—C2 1.545 (3) C10—C11 1.376 (3)
C2—C3 1.453 (3) C10—H10 0.9300
C3—C4 1.381 (3) C11—C12 1.368 (3)
C3—C8 1.395 (3) C11—H11 0.9300
C4—C5 1.378 (3) C12—C13 1.366 (3)
C4—H4 0.9300 C12—H12 0.9300
C5—C6 1.377 (3) C13—C14 1.381 (3)
C5—H5 0.9300 C13—H13 0.9300
C6—C7 1.394 (3) C14—H14 0.9300
C1—N1—C8 109.94 (15) C6—C7—H7 121.5
C1—N1—C9 124.71 (15) C7—C8—C3 120.98 (17)
C8—N1—C9 125.34 (15) C7—C8—N1 128.50 (16)
O1—C1—N1 127.60 (18) C3—C8—N1 110.52 (16)
O1—C1—C2 126.19 (18) C14—C9—C10 120.60 (17)
N1—C1—C2 106.20 (16) C14—C9—N1 118.86 (16)
O2—C2—C3 131.34 (19) C10—C9—N1 120.53 (17)
O2—C2—C1 123.17 (19) C11—C10—C9 119.18 (19)
C3—C2—C1 105.49 (16) C11—C10—H10 120.4
C4—C3—C8 120.96 (19) C9—C10—H10 120.4
C4—C3—C2 131.19 (19) C12—C11—C10 120.3 (2)
C8—C3—C2 107.85 (16) C12—C11—H11 119.8
C5—C4—C3 118.6 (2) C10—C11—H11 119.8
C5—C4—H4 120.7 C13—C12—C11 120.5 (2)
C3—C4—H4 120.7 C13—C12—H12 119.7
C6—C5—C4 119.9 (2) C11—C12—H12 119.7
C6—C5—H5 120.1 C12—C13—C14 120.2 (2)
C4—C5—H5 120.1 C12—C13—H13 119.9
C5—C6—C7 122.5 (2) C14—C13—H13 119.9
C5—C6—H6 118.8 C13—C14—C9 119.12 (19)
C7—C6—H6 118.8 C13—C14—H14 120.4
C8—C7—C6 117.03 (19) C9—C14—H14 120.4
C8—C7—H7 121.5
C8—N1—C1—O1 −179.8 (2) C2—C3—C8—C7 179.5 (2)
C9—N1—C1—O1 1.2 (3) C4—C3—C8—N1 179.6 (2)
C8—N1—C1—C2 −0.4 (2) C2—C3—C8—N1 0.0 (2)
C9—N1—C1—C2 −179.38 (19) C1—N1—C8—C7 −179.2 (2)
O1—C1—C2—O2 0.6 (4) C9—N1—C8—C7 −0.3 (3)
N1—C1—C2—O2 −178.8 (2) C1—N1—C8—C3 0.3 (2)
O1—C1—C2—C3 179.8 (2) C9—N1—C8—C3 179.23 (19)
N1—C1—C2—C3 0.4 (2) C1—N1—C9—C14 49.4 (3)
O2—C2—C3—C4 −0.6 (4) C8—N1—C9—C14 −129.4 (2)
C1—C2—C3—C4 −179.8 (2) C1—N1—C9—C10 −129.4 (2)
O2—C2—C3—C8 178.9 (3) C8—N1—C9—C10 51.9 (3)
C1—C2—C3—C8 −0.3 (2) C14—C9—C10—C11 1.0 (3)
C8—C3—C4—C5 0.6 (3) N1—C9—C10—C11 179.7 (2)
C2—C3—C4—C5 −179.9 (2) C9—C10—C11—C12 −1.2 (4)
C3—C4—C5—C6 0.1 (4) C10—C11—C12—C13 0.5 (4)
C4—C5—C6—C7 −0.6 (4) C11—C12—C13—C14 0.5 (4)
C5—C6—C7—C8 0.3 (4) C12—C13—C14—C9 −0.7 (4)
C6—C7—C8—C3 0.4 (3) C10—C9—C14—C13 0.0 (3)
C6—C7—C8—N1 179.8 (2) N1—C9—C14—C13 −178.8 (2)
C4—C3—C8—C7 −0.9 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C4—H4···O2i 0.93 2.58 3.297 (3) 134.
C7—H7···O1ii 0.93 2.52 3.262 (2) 137.
C11—H11···O2iii 0.93 2.58 3.407 (3) 149.

Symmetry codes: (i) x+1/2, −y+1/2, −z+2; (ii) −x+1, y−1/2, −z+3/2; (iii) −x, y−1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LX2190).

References

  1. Allen, F. H., Johnson, O., Shields, G. P., Smith, B. R. & Towler, M. (2004). J. Appl. Cryst. 37, 335–338.
  2. Brandenburg, K. (1998). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Nonius (2000). COLLECT Nonius BV, Delft, The Netherlands.
  4. Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press.
  5. Prakash, C. R., Raja, S. & Saravanan, G. (2010). Int J. Pharm. Pharm. Sci. 2, 177–181.
  6. Rathna, A. & Chandrasekhar, J. (1991). J. Chem. Soc. Perkins Trans. 2, pp. 1661–1666.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027334/lx2190sup1.cif

e-67-o2034-sup1.cif (16.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027334/lx2190Isup2.hkl

e-67-o2034-Isup2.hkl (72.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811027334/lx2190Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES