Abstract
In the title compound, C14H9NO2, the phenyl ring makes a dihedral angle of 50.59 (5)° with the mean plane of the isatin fragment. In the crystal, molecules are linked through weak intermolecular C—H⋯O hydrogen bonds. The crystal structure also exhibits two slipped π–π interactions between the benzene rings of neighbouring molecules [centroid–centroid distance = 3.968 (3) Å, interplanar distance = 3.484 (3) Å and slippage = 1.899 (3) Å], and between the phenyl rings of neighbouring molecules [centroid–centroid distance = 3.968 (3) Å, interplanar distance = 3.638 (3) Å and slippage = 1.584 (3) Å].
Related literature
For the pharmacological properties of isatin derivatives, see: Prakash et al. (2010 ▶). For C—C bond lengths in dikotone moieties, see: Rathna & Chandrasekhar, (1991 ▶).
Experimental
Crystal data
C14H9NO2
M r = 223.22
Orthorhombic,
a = 3.9677 (1) Å
b = 13.3259 (4) Å
c = 20.3397 (7) Å
V = 1075.42 (6) Å3
Z = 4
Mo Kα radiation
μ = 0.09 mm−1
T = 293 K
0.37 × 0.30 × 0.15 mm
Data collection
Nonius KappaCCD diffractometer
7556 measured reflections
1462 independent reflections
1085 reflections with I > 2σ(I)
R int = 0.051
Refinement
R[F 2 > 2σ(F 2)] = 0.038
wR(F 2) = 0.081
S = 1.06
1462 reflections
155 parameters
H-atom parameters constrained
Δρmax = 0.16 e Å−3
Δρmin = −0.12 e Å−3
Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL, Mercury (Allen et al., 2004 ▶) and DIAMOND (Brandenburg, 1998 ▶)’; software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027334/lx2190sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027334/lx2190Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811027334/lx2190Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C4—H4⋯O2i | 0.93 | 2.58 | 3.297 (3) | 134 |
| C7—H7⋯O1ii | 0.93 | 2.52 | 3.262 (2) | 137 |
| C11—H11⋯O2iii | 0.93 | 2.58 | 3.407 (3) | 149 |
Symmetry codes: (i)
; (ii)
; (iii)
.
supplementary crystallographic information
Comment
Isatin is a commercially available indole derivative. Isatin derivatives are well known for their pharmacological properties such as anticonvulsant activity (Prakash et al., 2010). We report herein the crystal structure of the title compound.
In the title compound (Fig. 1), the isatin unit is essentially planar, with a mean deviation of 0.004 (2) Å from the least–squares plane defined by the nine constituent atoms. The phenyl ring makes a dihedral angle of 50.59 (5)° with the mean plane of the isatin fragment. The observed C—C bond length of 1.547 (3) Å in diketo moiety is slightly longer than normal C—C bond length (Rathna & Chandrasekhar, 1991). The crystal packing (Fig. 2) is stabilized by three weak intermolecular C—H···O hydrogen bonds; the first one between a benzene H atom and the O atom of the carbonyl unit (Table 1; C4—H4···O2i), the second one between a benzene H atom and the O atom of the carbonyl unit (Table 1; C7—H7···O1ii), and the third one between a phenyl H atom and the O atom of the carbonyl unit (Table 1; C11—H11···O2iii).
The crystal packing (Fig. 3) is further stabilized by two weak slipped π···π interactions (Fig. 4); the first one between the benzene rings of neighbouring molecules, with a Cg1···Cg1i distance of 3.968 (3) Å and an interplanar distance of 3.484 (3) Å resulting in a slippage of 1.899 (3) Å (Cg1 is the centroid of the C3–C8 benzene ring), and the second one between the phenyl rings of neighbouring molecules, with a Cg2···Cg2idistance of 3.968 (3) Å and an interplanar distance of 3.638 (3) Å resulting in a slippage of 1.584 (3) Å (Cg2 is the centroid of the C9–C14 phenyl ring)
Experimental
The title compound, 1–phenylisatin, was purchased from Aldrich Chemical Co.. Single crystals suitable for X—ray diffraction were obtained by sublimation under reduced pressure.
Refinement
All the Friedel pairs were merged. All H–atoms were positioned geometrically and refined using a riding model with d(C—H) = 0.93Å, Uiso=1.2Ueq (C) for aromatic 0.97Å, Uiso = 1.2Ueq (C) for CH2 atoms.
Figures
Fig. 1.
The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius.
Fig. 2.
Packing in title compound showing C—H···O interactions. [Symmetry codes: (i) x + 1/2, - y + 1/2, - z + 2; (ii) - x + 1, y - 1/2, - z + 3/2; (iii) - x, y - 1/2, - z + 3/2; (iv) x - 1/2, - y + 1/2, - z + 2; (v) - x + 1, y + 1/2, - z + 3/2; (vi) - x, y + 1/2, - z + 3/2.]
Fig. 3.
A perspective view of the stacking of title compound in the unit cell viewed down the approximate a axial direction.
Fig. 4.
A view of the π···π interactions (dotted lines) in the crystal structure of the title compound. [Symmetry codes: (i) x + 1, y, z; (ii) x - 1, yz.]
Crystal data
| C14H9NO2 | F(000) = 464 |
| Mr = 223.22 | Dx = 1.379 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 4093 reflections |
| a = 3.9677 (1) Å | θ = 1.0–27.5° |
| b = 13.3259 (4) Å | µ = 0.09 mm−1 |
| c = 20.3397 (7) Å | T = 293 K |
| V = 1075.42 (6) Å3 | Rods, orange |
| Z = 4 | 0.37 × 0.30 × 0.15 mm |
Data collection
| Nonius KappaCCD diffractometer | 1085 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.051 |
| graphite | θmax = 27.4°, θmin = 4.3° |
| Detector resolution: 9 pixels mm-1 | h = −5→4 |
| φ and ω scans | k = −15→17 |
| 7556 measured reflections | l = −26→25 |
| 1462 independent reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.038 | H-atom parameters constrained |
| wR(F2) = 0.081 | w = 1/[σ2(Fo2) + (0.0318P)2 + 0.1048P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.06 | (Δ/σ)max < 0.001 |
| 1462 reflections | Δρmax = 0.16 e Å−3 |
| 155 parameters | Δρmin = −0.12 e Å−3 |
| 0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.017 (5) |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.3503 (5) | 0.20706 (10) | 0.76634 (7) | 0.0522 (4) | |
| O1 | 0.0729 (4) | 0.36020 (10) | 0.75768 (7) | 0.0685 (4) | |
| O2 | 0.0940 (5) | 0.34979 (11) | 0.90098 (7) | 0.0861 (6) | |
| C1 | 0.1973 (6) | 0.29305 (13) | 0.78955 (9) | 0.0544 (5) | |
| C2 | 0.2117 (6) | 0.28662 (15) | 0.86534 (9) | 0.0589 (6) | |
| C3 | 0.3830 (6) | 0.19284 (13) | 0.87981 (9) | 0.0550 (5) | |
| C4 | 0.4654 (6) | 0.14811 (16) | 0.93889 (10) | 0.0670 (6) | |
| H4 | 0.4099 | 0.1786 | 0.9786 | 0.080* | |
| C5 | 0.6316 (7) | 0.05730 (16) | 0.93787 (11) | 0.0714 (7) | |
| H5 | 0.6891 | 0.0258 | 0.9771 | 0.086* | |
| C6 | 0.7124 (7) | 0.01328 (16) | 0.87866 (11) | 0.0672 (6) | |
| H6 | 0.8264 | −0.0477 | 0.8789 | 0.081* | |
| C7 | 0.6296 (6) | 0.05666 (13) | 0.81841 (10) | 0.0572 (5) | |
| H7 | 0.6849 | 0.0258 | 0.7788 | 0.069* | |
| C8 | 0.4628 (5) | 0.14699 (13) | 0.82012 (8) | 0.0497 (5) | |
| C9 | 0.3944 (5) | 0.18304 (13) | 0.69803 (8) | 0.0502 (5) | |
| C10 | 0.2965 (6) | 0.09053 (14) | 0.67389 (10) | 0.0591 (6) | |
| H10 | 0.2021 | 0.0428 | 0.7017 | 0.071* | |
| C11 | 0.3406 (7) | 0.06987 (17) | 0.60815 (10) | 0.0697 (6) | |
| H11 | 0.2796 | 0.0074 | 0.5916 | 0.084* | |
| C12 | 0.4738 (7) | 0.14081 (19) | 0.56704 (11) | 0.0746 (7) | |
| H12 | 0.5012 | 0.1264 | 0.5226 | 0.090* | |
| C13 | 0.5670 (7) | 0.23267 (17) | 0.59071 (10) | 0.0706 (7) | |
| H13 | 0.6557 | 0.2806 | 0.5623 | 0.085* | |
| C14 | 0.5300 (6) | 0.25464 (15) | 0.65666 (10) | 0.0580 (6) | |
| H14 | 0.5956 | 0.3168 | 0.6730 | 0.070* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0648 (11) | 0.0426 (8) | 0.0491 (8) | 0.0002 (9) | 0.0042 (8) | 0.0007 (7) |
| O1 | 0.0824 (11) | 0.0514 (7) | 0.0717 (9) | 0.0092 (9) | −0.0031 (9) | 0.0038 (7) |
| O2 | 0.1197 (16) | 0.0691 (9) | 0.0694 (9) | 0.0189 (12) | 0.0108 (11) | −0.0142 (8) |
| C1 | 0.0609 (13) | 0.0437 (9) | 0.0585 (11) | −0.0030 (10) | 0.0017 (10) | −0.0003 (9) |
| C2 | 0.0685 (15) | 0.0513 (10) | 0.0570 (11) | −0.0023 (12) | 0.0054 (11) | −0.0071 (9) |
| C3 | 0.0624 (13) | 0.0509 (10) | 0.0516 (10) | −0.0062 (11) | 0.0002 (11) | −0.0008 (9) |
| C4 | 0.0776 (17) | 0.0688 (12) | 0.0547 (12) | −0.0082 (13) | −0.0035 (11) | −0.0005 (10) |
| C5 | 0.0798 (18) | 0.0711 (13) | 0.0632 (14) | −0.0008 (15) | −0.0110 (13) | 0.0132 (11) |
| C6 | 0.0685 (16) | 0.0564 (11) | 0.0767 (14) | 0.0005 (12) | −0.0096 (13) | 0.0088 (11) |
| C7 | 0.0619 (13) | 0.0499 (10) | 0.0598 (12) | 0.0004 (11) | 0.0024 (12) | −0.0010 (9) |
| C8 | 0.0538 (12) | 0.0448 (9) | 0.0507 (10) | −0.0079 (10) | 0.0012 (9) | 0.0028 (8) |
| C9 | 0.0509 (12) | 0.0521 (10) | 0.0477 (10) | 0.0018 (10) | 0.0011 (9) | 0.0003 (8) |
| C10 | 0.0625 (14) | 0.0527 (11) | 0.0622 (13) | −0.0027 (11) | 0.0032 (12) | −0.0012 (9) |
| C11 | 0.0782 (17) | 0.0662 (12) | 0.0646 (14) | 0.0101 (14) | −0.0076 (13) | −0.0139 (11) |
| C12 | 0.0856 (19) | 0.0907 (16) | 0.0475 (11) | 0.0272 (16) | −0.0009 (12) | −0.0046 (12) |
| C13 | 0.0742 (17) | 0.0805 (15) | 0.0571 (12) | 0.0090 (14) | 0.0097 (13) | 0.0159 (11) |
| C14 | 0.0598 (14) | 0.0561 (10) | 0.0581 (11) | −0.0023 (11) | 0.0022 (11) | 0.0069 (9) |
Geometric parameters (Å, °)
| N1—C1 | 1.380 (2) | C6—H6 | 0.9300 |
| N1—C8 | 1.427 (2) | C7—C8 | 1.374 (3) |
| N1—C9 | 1.436 (2) | C7—H7 | 0.9300 |
| O1—C1 | 1.210 (2) | C9—C14 | 1.381 (3) |
| O2—C2 | 1.205 (2) | C9—C10 | 1.383 (3) |
| C1—C2 | 1.545 (3) | C10—C11 | 1.376 (3) |
| C2—C3 | 1.453 (3) | C10—H10 | 0.9300 |
| C3—C4 | 1.381 (3) | C11—C12 | 1.368 (3) |
| C3—C8 | 1.395 (3) | C11—H11 | 0.9300 |
| C4—C5 | 1.378 (3) | C12—C13 | 1.366 (3) |
| C4—H4 | 0.9300 | C12—H12 | 0.9300 |
| C5—C6 | 1.377 (3) | C13—C14 | 1.381 (3) |
| C5—H5 | 0.9300 | C13—H13 | 0.9300 |
| C6—C7 | 1.394 (3) | C14—H14 | 0.9300 |
| C1—N1—C8 | 109.94 (15) | C6—C7—H7 | 121.5 |
| C1—N1—C9 | 124.71 (15) | C7—C8—C3 | 120.98 (17) |
| C8—N1—C9 | 125.34 (15) | C7—C8—N1 | 128.50 (16) |
| O1—C1—N1 | 127.60 (18) | C3—C8—N1 | 110.52 (16) |
| O1—C1—C2 | 126.19 (18) | C14—C9—C10 | 120.60 (17) |
| N1—C1—C2 | 106.20 (16) | C14—C9—N1 | 118.86 (16) |
| O2—C2—C3 | 131.34 (19) | C10—C9—N1 | 120.53 (17) |
| O2—C2—C1 | 123.17 (19) | C11—C10—C9 | 119.18 (19) |
| C3—C2—C1 | 105.49 (16) | C11—C10—H10 | 120.4 |
| C4—C3—C8 | 120.96 (19) | C9—C10—H10 | 120.4 |
| C4—C3—C2 | 131.19 (19) | C12—C11—C10 | 120.3 (2) |
| C8—C3—C2 | 107.85 (16) | C12—C11—H11 | 119.8 |
| C5—C4—C3 | 118.6 (2) | C10—C11—H11 | 119.8 |
| C5—C4—H4 | 120.7 | C13—C12—C11 | 120.5 (2) |
| C3—C4—H4 | 120.7 | C13—C12—H12 | 119.7 |
| C6—C5—C4 | 119.9 (2) | C11—C12—H12 | 119.7 |
| C6—C5—H5 | 120.1 | C12—C13—C14 | 120.2 (2) |
| C4—C5—H5 | 120.1 | C12—C13—H13 | 119.9 |
| C5—C6—C7 | 122.5 (2) | C14—C13—H13 | 119.9 |
| C5—C6—H6 | 118.8 | C13—C14—C9 | 119.12 (19) |
| C7—C6—H6 | 118.8 | C13—C14—H14 | 120.4 |
| C8—C7—C6 | 117.03 (19) | C9—C14—H14 | 120.4 |
| C8—C7—H7 | 121.5 | ||
| C8—N1—C1—O1 | −179.8 (2) | C2—C3—C8—C7 | 179.5 (2) |
| C9—N1—C1—O1 | 1.2 (3) | C4—C3—C8—N1 | 179.6 (2) |
| C8—N1—C1—C2 | −0.4 (2) | C2—C3—C8—N1 | 0.0 (2) |
| C9—N1—C1—C2 | −179.38 (19) | C1—N1—C8—C7 | −179.2 (2) |
| O1—C1—C2—O2 | 0.6 (4) | C9—N1—C8—C7 | −0.3 (3) |
| N1—C1—C2—O2 | −178.8 (2) | C1—N1—C8—C3 | 0.3 (2) |
| O1—C1—C2—C3 | 179.8 (2) | C9—N1—C8—C3 | 179.23 (19) |
| N1—C1—C2—C3 | 0.4 (2) | C1—N1—C9—C14 | 49.4 (3) |
| O2—C2—C3—C4 | −0.6 (4) | C8—N1—C9—C14 | −129.4 (2) |
| C1—C2—C3—C4 | −179.8 (2) | C1—N1—C9—C10 | −129.4 (2) |
| O2—C2—C3—C8 | 178.9 (3) | C8—N1—C9—C10 | 51.9 (3) |
| C1—C2—C3—C8 | −0.3 (2) | C14—C9—C10—C11 | 1.0 (3) |
| C8—C3—C4—C5 | 0.6 (3) | N1—C9—C10—C11 | 179.7 (2) |
| C2—C3—C4—C5 | −179.9 (2) | C9—C10—C11—C12 | −1.2 (4) |
| C3—C4—C5—C6 | 0.1 (4) | C10—C11—C12—C13 | 0.5 (4) |
| C4—C5—C6—C7 | −0.6 (4) | C11—C12—C13—C14 | 0.5 (4) |
| C5—C6—C7—C8 | 0.3 (4) | C12—C13—C14—C9 | −0.7 (4) |
| C6—C7—C8—C3 | 0.4 (3) | C10—C9—C14—C13 | 0.0 (3) |
| C6—C7—C8—N1 | 179.8 (2) | N1—C9—C14—C13 | −178.8 (2) |
| C4—C3—C8—C7 | −0.9 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C4—H4···O2i | 0.93 | 2.58 | 3.297 (3) | 134. |
| C7—H7···O1ii | 0.93 | 2.52 | 3.262 (2) | 137. |
| C11—H11···O2iii | 0.93 | 2.58 | 3.407 (3) | 149. |
Symmetry codes: (i) x+1/2, −y+1/2, −z+2; (ii) −x+1, y−1/2, −z+3/2; (iii) −x, y−1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LX2190).
References
- Allen, F. H., Johnson, O., Shields, G. P., Smith, B. R. & Towler, M. (2004). J. Appl. Cryst. 37, 335–338.
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- Nonius (2000). COLLECT Nonius BV, Delft, The Netherlands.
- Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press.
- Prakash, C. R., Raja, S. & Saravanan, G. (2010). Int J. Pharm. Pharm. Sci. 2, 177–181.
- Rathna, A. & Chandrasekhar, J. (1991). J. Chem. Soc. Perkins Trans. 2, pp. 1661–1666.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027334/lx2190sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027334/lx2190Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811027334/lx2190Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report




