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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jul 30;67(Pt 8):o2151. doi: 10.1107/S1600536811028753

(E)-2-[4-(Dimethyl­amino)­styr­yl]-1-methyl­pyridinium triiodide

Hoong-Kun Fun a,*,, Kullapa Chanawanno b, Suchada Chantrapromma b,§
PMCID: PMC3213589  PMID: 22091166

Abstract

The asymmetric unit of the title compound, C16H19N2 +·I3 , contains a (E)-2-[4-(dimethyl­amino)­styr­yl)-1-methyl­pyrid­in­ium cation and half each of two triiodide anions. The complete triiodide anions are each generated by inversion symmetry. The planar cation has all of its eighteen non-H atoms situated on a mirror plane. In the crystal, the cations are stacked along the b axis by π–π inter­actions with a centroid–centroid distance of 3.5757 (13) Å. The triiodide anions are located between the cations. The crystal structure is further consolidated by short C⋯C [3.322 (9)–3.3952 (19) Å] contacts.

Related literature

For background to and applications of pyridinium compounds, see: Chanawanno et al. (2010); Fisicaro et al. (1990); Pernak et al. (2001). For related structures, see: Chantrapromma et al. (2010); Zhang et al. (2008). For standard bond lengths, see: Allen et al. (1987). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).graphic file with name e-67-o2151-scheme1.jpg

Experimental

Crystal data

  • C16H19N2 +·I3

  • M r = 620.03

  • Monoclinic, Inline graphic

  • a = 19.8760 (3) Å

  • b = 6.6126 (1) Å

  • c = 14.4421 (2) Å

  • β = 95.107 (1)°

  • V = 1890.62 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 4.96 mm−1

  • T = 100 K

  • 0.45 × 0.15 × 0.04 mm

Data collection

  • Bruker APEX DUO CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.212, T max = 0.838

  • 16143 measured reflections

  • 2484 independent reflections

  • 2263 reflections with I > 2σ(I)

  • R int = 0.030

Refinement

  • R[F 2 > 2σ(F 2)] = 0.030

  • wR(F 2) = 0.079

  • S = 1.04

  • 2484 reflections

  • 129 parameters

  • H-atom parameters constrained

  • Δρmax = 1.74 e Å−3

  • Δρmin = −0.60 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811028753/sj5182sup1.cif

e-67-o2151-sup1.cif (17.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028753/sj5182Isup2.hkl

e-67-o2151-Isup2.hkl (122.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811028753/sj5182Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

Financial support by the Prince of Songkla University is greatfully acknowledged. The authors also thank Universiti Sains Malaysia for the Research University Grant No. 1001/PFIZIK/811160. KC thanks the Crystal Materials Research Unit for the Research Assistance fellowship.

supplementary crystallographic information

Comment

Pyridinium halide salts, generally possess surface active and interesting antimicrobial properties. They contain reactive functional groups covalently bound to the long hydrophobic chain and can exhibit biological activity (Fisicaro et al., 1990; Chanawanno et al., 2010). It has been proven that one of the factors which control their antimicrobial activity is the presence of anions in the compounds. In the work done by Pernak and coworkers, it was shown that the various anion types can exhibit different antimicrobial activities (Pernak et al., 2001). As our ongoing research is aimed at enhancing the antimicrobial activity of pyridinium salts, we have synthesized pyridinium salts with various anions in order to investigate the relationship between the types of anion and their antimicrobial properties. In the course of this work, the title compound (I) was synthesized and its crystal structure is reported here.

Fig. 1 shows the molecular structure of the title compound (I); the asymmetric unit consists of a C16H19N2+ cation and two half-I3- anions. The complete molecule of one triiodide anion (I2A) is generated by a crystallographic symmetry centre 1 - x, y, -z whereas the other (I4A) is by 1 - x, y, 1 - z. The cation is 100% planar as all its eighteen non-hydrogen atoms lie on a mirror plane, x, 0, z. One H atom of each of its three methyl groups at C14, C15 and C16 also lies in the mirror plane. The cation exists in an E configuration with respect to the C6═C7 double bond [1.327 (8) Å] and the torsion angles C5–C6–C7–C8 = 180.000 (3)°. The bond lengths (Allen et al., 1987) and angles in (I) are in normal ranges and comparable to those found in related structures (Chantrapromma et al., 2010; Zhang et al., 2008).

In the crystal packing (Fig. 2) the cations are stacked along the b axis by π···π interactions with the distances Cg1···Cg2 = 3.5757 (13) Å (symmetry codes: 1/2 - x, -1/2 + y, 2 - z; 1/2 - x, 1/2 + y, 2 - z; 1/2 - x, -1/2 - y, 2 - z and 1/2 - x, 1/2 - y, 2 - z); Cg1 and Cg2 are the centroids of the C1–C5/N1 and C8–C13, respectively. Triiodide anions are located in the interstitials of the cations. The crystal structure is further consolidated by these π···π interactions and short C···C [3.322 (9)–3.3952 (19)Å] contacts.

Experimental

The title compound was synthesized by mixing a solution of (E)-2-[4-(dimethylamino)styryl]-1-methylpyridinium iodide (Zhang et al., 2008) (0.20 g, 0.55 mmol) in hot methanol (50 ml) and a solution of CuI2 (0.17 g, 0.55 mmol) in hot methanol (30 ml). The mixture was stirred for half an hour and then left at room temperature. The title compound was formed as a red solid after 2 days. Orange needle-shaped single crystals suitable for x-ray structure determination were obtained by recrystallization from ethanol by slow evaporation of the solvent at ambient temperature over several days, M.p. >573 K.

Refinement

All H atoms were placed in calculated positions with d(C—H) = 0.95 Å, Uiso=1.2Ueq(C) for aromatic and CH and 0.96 Å, Uiso = 1.2Ueq(C) for CH3 atoms. The highest residual electron density peak is located at 0.92 Å from I3 and the deepest hole is located at 0.66 Å from C16.

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of (I) showing 50% probability displacement ellipsoids and the atom-numbering scheme. Atoms I2A and I4A were generated by symmetry codes 1 - x, y, -z and 1 - x, y, 1 - z, respectively whereas one of the three H atoms on each of the three methyl groups are generated by symmetry code x, -y, z.

Fig. 2.

Fig. 2.

The crystal packing of (I) viewed along the b axis.

Crystal data

C16H19N2+·I3 F(000) = 1152
Mr = 620.03 Dx = 2.178 Mg m3
Monoclinic, C2/m Melting point > 537 K
Hall symbol: -C 2y Mo Kα radiation, λ = 0.71073 Å
a = 19.8760 (3) Å Cell parameters from 2484 reflections
b = 6.6126 (1) Å θ = 1.4–28.0°
c = 14.4421 (2) Å µ = 4.96 mm1
β = 95.107 (1)° T = 100 K
V = 1890.62 (5) Å3 Needle, orange
Z = 4 0.45 × 0.15 × 0.04 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer 2484 independent reflections
Radiation source: sealed tube 2263 reflections with I > 2σ(I)
graphite Rint = 0.030
φ and ω scans θmax = 28.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −26→26
Tmin = 0.212, Tmax = 0.838 k = −8→8
16143 measured reflections l = −19→18

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0387P)2 + 13.6577P] where P = (Fo2 + 2Fc2)/3
2484 reflections (Δ/σ)max = 0.001
129 parameters Δρmax = 1.74 e Å3
0 restraints Δρmin = −0.60 e Å3

Special details

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
I1 0.5000 0.5000 0.0000 0.02351 (12)
I2 0.424696 (18) 0.5000 0.16345 (3) 0.03339 (11)
I3 0.5000 0.5000 0.5000 0.03354 (14)
I4 0.35817 (2) 0.5000 0.42352 (3) 0.03813 (12)
N1 0.2700 (3) 0.0000 1.2529 (3) 0.0300 (10)
N2 0.4157 (3) 0.0000 0.6794 (4) 0.0393 (12)
C1 0.2277 (3) 0.0000 1.3233 (4) 0.0338 (13)
H1A 0.2472 0.0000 1.3858 0.041*
C2 0.1609 (3) 0.0000 1.3078 (4) 0.0356 (13)
H2A 0.1331 0.0000 1.3580 0.043*
C3 0.1319 (3) 0.0000 1.2140 (4) 0.0329 (12)
H3A 0.0842 0.0000 1.2007 0.039*
C4 0.1724 (3) 0.0000 1.1446 (4) 0.0319 (12)
H4A 0.1530 0.0000 1.0820 0.038*
C5 0.2453 (3) 0.0000 1.1631 (4) 0.0288 (11)
C6 0.2883 (3) 0.0000 1.0881 (4) 0.0255 (10)
H6A 0.3355 0.0000 1.1052 0.031*
C7 0.2692 (3) 0.0000 0.9977 (4) 0.0275 (11)
H7A 0.2218 0.0000 0.9817 0.033*
C8 0.3107 (3) 0.0000 0.9192 (4) 0.0290 (11)
C9 0.2775 (3) 0.0000 0.8304 (4) 0.0289 (11)
H9A 0.2295 0.0000 0.8240 0.035*
C10 0.3105 (3) 0.0000 0.7535 (4) 0.0272 (11)
H10A 0.2852 0.0000 0.6945 0.033*
C11 0.3815 (3) 0.0000 0.7579 (4) 0.0232 (10)
C12 0.4171 (3) 0.0000 0.8475 (4) 0.0272 (11)
H12A 0.4651 0.0000 0.8536 0.033*
C13 0.3818 (3) 0.0000 0.9268 (4) 0.0336 (12)
H13A 0.4059 0.0000 0.9866 0.040*
C14 0.3424 (3) 0.0000 1.2755 (5) 0.0361 (13)
H14A 0.3599 0.1166 1.2461 0.043*
H14B 0.3546 0.0000 1.3414 0.043*
C15 0.3804 (4) 0.0000 0.5885 (4) 0.0391 (14)
H15A 0.3516 0.1166 0.5844 0.047*
H15B 0.4110 0.0000 0.5407 0.047*
C16 0.4903 (3) 0.0000 0.6862 (5) 0.0460 (16)
H16A 0.5052 0.1166 0.7219 0.055*
H16B 0.5073 0.0000 0.6261 0.055*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
I1 0.0208 (2) 0.0210 (2) 0.0277 (2) 0.000 −0.00351 (16) 0.000
I2 0.03043 (19) 0.0368 (2) 0.0338 (2) 0.000 0.00747 (14) 0.000
I3 0.0526 (3) 0.0261 (3) 0.0232 (2) 0.000 0.0100 (2) 0.000
I4 0.0541 (3) 0.0367 (2) 0.02383 (19) 0.000 0.00475 (16) 0.000
N1 0.038 (2) 0.023 (2) 0.028 (2) 0.000 −0.0003 (19) 0.000
N2 0.047 (3) 0.044 (3) 0.028 (2) 0.000 0.011 (2) 0.000
C1 0.059 (4) 0.018 (2) 0.026 (3) 0.000 0.014 (2) 0.000
C2 0.054 (4) 0.023 (3) 0.031 (3) 0.000 0.010 (3) 0.000
C3 0.038 (3) 0.023 (3) 0.037 (3) 0.000 0.002 (2) 0.000
C4 0.052 (3) 0.020 (2) 0.022 (2) 0.000 −0.005 (2) 0.000
C5 0.050 (3) 0.015 (2) 0.023 (2) 0.000 0.011 (2) 0.000
C6 0.036 (3) 0.017 (2) 0.024 (2) 0.000 0.004 (2) 0.000
C7 0.033 (3) 0.022 (2) 0.027 (3) 0.000 0.002 (2) 0.000
C8 0.039 (3) 0.017 (2) 0.034 (3) 0.000 0.013 (2) 0.000
C9 0.026 (2) 0.017 (2) 0.044 (3) 0.000 0.005 (2) 0.000
C10 0.027 (2) 0.017 (2) 0.036 (3) 0.000 −0.008 (2) 0.000
C11 0.033 (3) 0.017 (2) 0.021 (2) 0.000 0.0046 (19) 0.000
C12 0.025 (2) 0.025 (3) 0.030 (3) 0.000 −0.003 (2) 0.000
C13 0.052 (3) 0.025 (3) 0.022 (3) 0.000 −0.008 (2) 0.000
C14 0.040 (3) 0.030 (3) 0.038 (3) 0.000 0.005 (2) 0.000
C15 0.052 (4) 0.037 (3) 0.028 (3) 0.000 0.004 (3) 0.000
C16 0.040 (3) 0.056 (4) 0.044 (4) 0.000 0.015 (3) 0.000

Geometric parameters (Å, °)

I1—I2i 2.9054 (4) C6—H6A 0.9500
I1—I2 2.9054 (4) C7—C8 1.459 (8)
I3—I4 2.9347 (4) C7—H7A 0.9500
I3—I4ii 2.9347 (4) C8—C9 1.389 (8)
N1—C5 1.346 (7) C8—C13 1.407 (9)
N1—C1 1.375 (7) C9—C10 1.339 (8)
N1—C14 1.448 (8) C9—H9A 0.9500
N2—C11 1.373 (7) C10—C11 1.407 (7)
N2—C15 1.433 (8) C10—H10A 0.9500
N2—C16 1.476 (9) C11—C12 1.420 (7)
C1—C2 1.327 (9) C12—C13 1.396 (8)
C1—H1A 0.9500 C12—H12A 0.9500
C2—C3 1.425 (9) C13—H13A 0.9500
C2—H2A 0.9500 C14—H14A 0.9601
C3—C4 1.341 (9) C14—H14B 0.9600
C3—H3A 0.9500 C15—H15A 0.9600
C4—C5 1.449 (9) C15—H15B 0.9598
C4—H4A 0.9500 C16—H16A 0.9600
C5—C6 1.438 (7) C16—H16B 0.9600
C6—C7 1.327 (8)
I2i—I1—I2 180.000 (12) C8—C7—H7A 115.4
I4—I3—I4ii 180.0 C9—C8—C13 117.6 (5)
C5—N1—C1 121.2 (5) C9—C8—C7 117.5 (5)
C5—N1—C14 119.2 (5) C13—C8—C7 124.9 (5)
C1—N1—C14 119.6 (5) C10—C9—C8 122.6 (5)
C11—N2—C15 121.2 (5) C10—C9—H9A 118.7
C11—N2—C16 120.9 (5) C8—C9—H9A 118.7
C15—N2—C16 117.9 (5) C9—C10—C11 121.7 (5)
C2—C1—N1 122.9 (6) C9—C10—H10A 119.2
C2—C1—H1A 118.6 C11—C10—H10A 119.2
N1—C1—H1A 118.6 N2—C11—C10 122.2 (5)
C1—C2—C3 118.4 (6) N2—C11—C12 120.6 (5)
C1—C2—H2A 120.8 C10—C11—C12 117.3 (5)
C3—C2—H2A 120.8 C13—C12—C11 120.1 (5)
C4—C3—C2 119.4 (6) C13—C12—H12A 120.0
C4—C3—H3A 120.3 C11—C12—H12A 120.0
C2—C3—H3A 120.3 C12—C13—C8 120.8 (5)
C3—C4—C5 121.3 (5) C12—C13—H13A 119.6
C3—C4—H4A 119.4 C8—C13—H13A 119.6
C5—C4—H4A 119.4 N1—C14—H14A 106.9
N1—C5—C6 122.4 (5) N1—C14—H14B 112.4
N1—C5—C4 116.8 (5) H14A—C14—H14B 111.7
C6—C5—C4 120.8 (5) N2—C15—H15A 107.3
C7—C6—C5 127.2 (5) N2—C15—H15B 111.7
C7—C6—H6A 116.4 H15A—C15—H15B 111.7
C5—C6—H6A 116.4 N2—C16—H16A 107.2
C6—C7—C8 129.3 (5) N2—C16—H16B 111.9
C6—C7—H7A 115.4 H16A—C16—H16B 111.7
C5—N1—C1—C2 0.000 (3) C6—C7—C8—C13 0.000 (2)
C14—N1—C1—C2 180.000 (2) C13—C8—C9—C10 0.000 (2)
N1—C1—C2—C3 0.000 (3) C7—C8—C9—C10 180.000 (2)
C1—C2—C3—C4 0.000 (3) C8—C9—C10—C11 0.000 (2)
C2—C3—C4—C5 0.000 (3) C15—N2—C11—C10 0.000 (2)
C1—N1—C5—C6 180.000 (2) C16—N2—C11—C10 180.000 (1)
C14—N1—C5—C6 0.000 (3) C15—N2—C11—C12 180.000 (1)
C1—N1—C5—C4 0.000 (3) C16—N2—C11—C12 0.000 (2)
C14—N1—C5—C4 180.000 (2) C9—C10—C11—N2 180.000 (1)
C3—C4—C5—N1 0.000 (2) C9—C10—C11—C12 0.000 (2)
C3—C4—C5—C6 180.000 (2) N2—C11—C12—C13 180.000 (2)
N1—C5—C6—C7 180.000 (2) C10—C11—C12—C13 0.000 (2)
C4—C5—C6—C7 0.000 (3) C11—C12—C13—C8 0.000 (2)
C5—C6—C7—C8 180.000 (2) C9—C8—C13—C12 0.000 (2)
C6—C7—C8—C9 180.000 (2) C7—C8—C13—C12 180.000 (2)

Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ5182).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811028753/sj5182sup1.cif

e-67-o2151-sup1.cif (17.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028753/sj5182Isup2.hkl

e-67-o2151-Isup2.hkl (122.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811028753/sj5182Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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