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. 1985 Jul 25;13(14):5215–5231. doi: 10.1093/nar/13.14.5215

Action of acid on oligoribonucleotide phosphotriester intermediates. Effect of released vicinal hydroxy functions.

C B Reese, P A Skone
PMCID: PMC321860  PMID: 3860798

Abstract

When 2'-O-methoxytetrahydropyranyl-5'-O-(9-phenylxanthen-9-yl) uridylyl-(3'----5')-(2',3'-di-O-acetyluridine) 2-chlorophenyl ester (9) is treated with zinc bromide in dichloromethane-propan-2-ol (85:15 v/v) at room temperature, under stringently anhydrous conditions, the corresponding 5'-unblocked dinucleoside phosphate (10) is obtained in 86% isolated yield; however, when no special precautions are taken to exclude moisture, (10) is obtained in only 72% yield. The removal of the 5'-O-(9-phenylxanthen-9-yl) protecting group from (10) with a protic acid (phenyl dihydrogen phosphate) appears to be much less selective and efficient. 80% Acetic acid promoted removal of the methoxytetrahydropyranyl protecting group from the isomeric fully-protected uridylyl-(3'----5')- and uridylyl-(2'----5')-uridine derivatives [(11) and (21c), respectively] leads to virtually identical mixtures [Figures 1a and 1b, respectively] of the partially-protected dinucleoside phosphates [(14) and (15)], 2',3'-di-O-acetyluridine (8), 5'-O-acetyluridine 2',3'-cyclic phosphate (16), and 5'-O-acetyluridine 2'(3')-phosphates [(18) and (17)].

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Griffin B. E., Jarman M., Reese C. B. The synthesis of oligoribonucleotides. IV. Preparation of dinucleoside phosphates from 2',5'-protected ribonucleoside derivatives. Tetrahedron. 1968 Jan;24(2):639–662. doi: 10.1016/0040-4020(68)88015-9. [DOI] [PubMed] [Google Scholar]
  2. Markiewicz W. T., Biała E., Adamiak R. W., Grześkowiak K., Kierzek R., Kraszewski A., Stawiński J., Wiewiórowski M. Further studies on oligoribonucleotide synthesis. Nucleic Acids Symp Ser. 1980;(7):115–127. [PubMed] [Google Scholar]
  3. RAMMLER D. H., KHORANA H. G. A new approach to the specific synthesis of the C3'-C5' inter-ribonucleotide linkage. Biochem Biophys Res Commun. 1962 Apr 3;7:147–150. doi: 10.1016/0006-291x(62)90164-x. [DOI] [PubMed] [Google Scholar]
  4. Reese C. B., Saffhill R., Sulston J. E. 4-methoxytetrahydropyran-4-yl. A symmetrical alternative to the tetrahydropyranyl protecting group. Tetrahedron. 1970 Feb;26(4):1023–1030. doi: 10.1016/s0040-4020(01)98779-4. [DOI] [PubMed] [Google Scholar]
  5. Reese C. B., Zard L. Some observations relating to the oximate ion promoted unblocking of oligonucleotide aryl esters. Nucleic Acids Res. 1981 Sep 25;9(18):4611–4626. doi: 10.1093/nar/9.18.4611. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. de Rooij J. F., Wille-Hazeleger G., Burgers P. M., van Boom J. H. Neighbouring group participation in the unblocking of phosphotriesters of nucleic acids. Nucleic Acids Res. 1979;6(6):2237–2259. doi: 10.1093/nar/6.6.2237. [DOI] [PMC free article] [PubMed] [Google Scholar]

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