Abstract
The total genome sequence of L11A, an attenuated strain of tobacco mosaic virus (TMV), has been determined. This strain is able to multiply in tomato plants without inducing any remarkable symptoms, but to protect them from later infection with virulent TMV strains. When compared with the recently published total genome sequence of TMV L (the virulent ancestral strain of L11A) ten base substitutions were found in the L11A genome. Seven of these occurred in the third letters of in-phase codons and did not influence amino acids. Only three, which were in the common reading frame for both the 130K and 180K proteins, resulted in amino acid changes. Together with the result of the partial sequence of RNA of L11, an intermediate strain in sequential isolation from L to L11A, it is observed that one base at the nucleotide position 1117 is changed from L to L11 and two bases at the positions 2349 and 2754 are changed from L11 to L A11.
Full text
PDF





Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Dawson W. O., White J. L. A temperature-sensitive mutant of tobacco mosaic virus deficient in synthesis of single-stranded RNA. Virology. 1979 Feb;93(1):104–110. doi: 10.1016/0042-6822(79)90279-4. [DOI] [PubMed] [Google Scholar]
- FRAENKEL-CONRAT H., SINGER B., TSUGITA A. Purification of viral RNA by means of bentonite. Virology. 1961 May;14:54–58. doi: 10.1016/0042-6822(61)90131-3. [DOI] [PubMed] [Google Scholar]
- GIERER A., SCHRAMM G. Infectivity of ribonucleic acid from tobacco mosaic virus. Nature. 1956 Apr 14;177(4511):702–703. doi: 10.1038/177702a0. [DOI] [PubMed] [Google Scholar]
- Goelet P., Lomonossoff G. P., Butler P. J., Akam M. E., Gait M. J., Karn J. Nucleotide sequence of tobacco mosaic virus RNA. Proc Natl Acad Sci U S A. 1982 Oct;79(19):5818–5822. doi: 10.1073/pnas.79.19.5818. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kiho Y., Nishiguchi M. Unique nature of an attenuated strain of tobacco mosaic virus: autoregulation. Microbiol Immunol. 1984;28(5):589–599. doi: 10.1111/j.1348-0421.1984.tb00711.x. [DOI] [PubMed] [Google Scholar]
- Mandeles S. Location of unique sequences in tobacco mosaic virus ribonucleic acid. J Biol Chem. 1968 Jul 10;243(13):3671–3674. [PubMed] [Google Scholar]
- Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
- Meshi T., Ishikawa M., Takamatsu N., Ohno T., Okada Y. The 5'-terminal sequence of TMV RNA. Question on the polymorphism found in vulgare strain. FEBS Lett. 1983 Oct 17;162(2):282–285. doi: 10.1016/0014-5793(83)80772-8. [DOI] [PubMed] [Google Scholar]
- Meshi T., Ohno T., Iba H., Okada Y. Nucleotide sequence of a cloned cDNA copy of TMV (cowpea strain) RNA, including the assembly origin, the coat protein cistron, and the 3' non-coding region. Mol Gen Genet. 1981;184(1):20–25. doi: 10.1007/BF00271189. [DOI] [PubMed] [Google Scholar]
- Nomoto A., Omata T., Toyoda H., Kuge S., Horie H., Kataoka Y., Genba Y., Nakano Y., Imura N. Complete nucleotide sequence of the attenuated poliovirus Sabin 1 strain genome. Proc Natl Acad Sci U S A. 1982 Oct;79(19):5793–5797. doi: 10.1073/pnas.79.19.5793. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ohno T., Aoyagi M., Yamanashi Y., Saito H., Ikawa S., Meshi T., Okada Y. Nucleotide sequence of the tobacco mosaic virus (tomato strain) genome and comparison with the common strain genome. J Biochem. 1984 Dec;96(6):1915–1923. doi: 10.1093/oxfordjournals.jbchem.a135026. [DOI] [PubMed] [Google Scholar]
- Okayama H., Berg P. High-efficiency cloning of full-length cDNA. Mol Cell Biol. 1982 Feb;2(2):161–170. doi: 10.1128/mcb.2.2.161. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sakai F., Takebe I. Protein synthesis in tobacco mesophyll protoplasts induced by tobacco mosaic virus infection. Virology. 1974 Dec;62(2):426–433. doi: 10.1016/0042-6822(74)90404-8. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Takamatsu N., Ohno T., Meshi T., Okada Y. Molecular cloning and nucleotide sequence of the 30K and the coat protein cistron of TMV (tomato strain) genome. Nucleic Acids Res. 1983 Jun 11;11(11):3767–3778. doi: 10.1093/nar/11.11.3767. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zimmern D. An extended secondary structure model for the TMV assembly origin, and its correlation with protection studies and an assembly defective mutant. EMBO J. 1983;2(11):1901–1907. doi: 10.1002/j.1460-2075.1983.tb01677.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zimmern D., Hunter T. Point mutation in the 30-K open reading frame of TMV implicated in temperature-sensitive assembly and local lesion spreading of mutant Ni 2519. EMBO J. 1983;2(11):1893–1900. doi: 10.1002/j.1460-2075.1983.tb01676.x. [DOI] [PMC free article] [PubMed] [Google Scholar]

